EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Phenotypes

GWAS

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000139697 (Gene tree)
Gene ID: 55206
Gene Symbol: SBNO1
Alias: MOP3|FLJ10701|FLJ10833|Sno
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 76,417 bases
Position: chr12:123,289,109-123,365,525
Accession: 22973
RBP type: canonical RBP
Summary: SBNO1 (Strawberry Notch Homolog 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include oxidoreductase activity and hydrolase activity. An important paralog of this gene is SBNO2.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000267176	ResIII	PF04851.15	3.2e-07	1	1
ENSP00000387361	ResIII	PF04851.15	3.2e-07	1	1
ENSP00000473665	ResIII	PF04851.15	3.2e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000420886	SBNO1-202	10981	-	ENSP00000387361	1393 (aa)	-	A3KN83
ENST00000267176	SBNO1-201	11121	-	ENSP00000267176	1392 (aa)	-	A3KN83
ENST00000602398	SBNO1-203	4313	-	ENSP00000473665	1393 (aa)	-	A3KN83

Gene Model

Click here to download ENSG00000139697's gene model file

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000139697	Body Height	1E-26	25282103
ENSG00000139697	Cholesterol, HDL	8E-9	20686565
ENSG00000139697	Education	7E-8	25201988
ENSG00000139697	Head	8E-9	22504419
ENSG00000139697	Body Height	4E-15	20881960
ENSG00000139697	Cholesterol, HDL	3E-8	24097068

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000139697	rs11830103	12	123338999	A	Height	20881960	[NR] unit decrease	0.035	EFO_0004339
ENSG00000139697	rs4759375	12	123311691	T	HDL cholesterol	24097068	[NR] unit increase	0.056	EFO_0004612
ENSG00000139697	rs7980687	12	123338164	A	Educational attainment	25201988	[NR] unit increase	0.029	EFO_0004784
ENSG00000139697	rs1060105	12	123321672	T	Diastolic blood pressure	27618447	mmHg decrease	0.184	EFO_0006336
ENSG00000139697	rs9300255	12	123348974	C	Neutrophil percentage of white cells	27863252	[0.018-0.036] unit decrease	0.02683478	EFO_0007990
ENSG00000139697	rs4759375	12	123311691	T	HDL cholesterol	20686565	[0.55-1.17] mg/dL increase	0.86	EFO_0004612
ENSG00000139697	rs7980687	12	123338164	A	Head circumference (infant)	22504419	[0.049-0.099] SD increase	0.074	EFO_0004577
ENSG00000139697	rs7980687	12	123338164	A	Height	25282103	[0.031-0.047] unit increase	0.039	EFO_0004339
ENSG00000139697	rs10773003	12	123290580	A	HDL cholesterol levels	28334899	[0.02-0.04] unit increase	0.03	EFO_0004612
ENSG00000139697	rs10773003	12	123290580	A	HDL cholesterol levels	28334899	[0.022-0.056] unit increase	0.0387	EFO_0004612
ENSG00000139697	rs10773003	12	123290580	A	HDL cholesterol levels	28334899	[0.032-0.054] unit increase (EA Beta values)	0.0431	EFO_0004612
ENSG00000139697	rs4759375	12	123311691	C	Total cholesterol levels	29507422	unit decrease	0.036	EFO_0004574
ENSG00000139697	rs4759375	12	123311691	C	Total cholesterol levels	29507422	unit decrease	0.036	EFO_0004574
ENSG00000139697	rs4759375	12	123311691	C	High density lipoprotein cholesterol levels	29507422	unit decrease	0.033	EFO_0004612
ENSG00000139697	rs1060105	12	123321672	C	Knee osteoarthritis	30374069	[1.04-1.1]	1.07	EFO_0004616
ENSG00000139697	rs77866843	12	123352744	?	White blood cell count	30595370			EFO_0004308
ENSG00000139697	rs7980687	12	123338164	G	Diastolic blood pressure	27841878	unit increase	0.196	EFO_0006336
ENSG00000139697	rs56116847	12	123350686	A	Knee osteoarthritis	30664745	[1.04-1.08]	1.06	EFO_0004616
ENSG00000139697	rs1060105	12	123321672	C	Type 2 diabetes	29632382	[1.02-1.06]	1.04	EFO_0001360
ENSG00000139697	rs1060105	12	123321672	C	Type 2 diabetes (adjusted for BMI)	29632382	[1.02-1.06]	1.04	EFO_0001360
ENSG00000139697	rs1060105	12	123321672	C	Type 2 diabetes (adjusted for BMI)	29632382	[1.02-1.06]	1.04	EFO_0001360

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000139697's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000139697	SBNO1	82	81.083	ENSAPOG00000003196	sbno1	98	81.169	Acanthochromis_polyacanthus
ENSG00000139697	SBNO1	100	97.851	ENSAMEG00000015151	SBNO1	100	97.851	Ailuropoda_melanoleuca
ENSG00000139697	SBNO1	99	74.577	ENSACIG00000008088	sbno1	99	74.489	Amphilophus_citrinellus
ENSG00000139697	SBNO1	99	75.053	ENSAOCG00000014859	sbno1	99	75.193	Amphiprion_ocellaris
ENSG00000139697	SBNO1	99	75.053	ENSAPEG00000006069	sbno1	99	75.193	Amphiprion_percula
ENSG00000139697	SBNO1	99	75.840	ENSATEG00000006667	sbno1	99	75.980	Anabas_testudineus
ENSG00000139697	SBNO1	100	92.098	ENSAPLG00000015674	SBNO1	100	92.103	Anas_platyrhynchos
ENSG00000139697	SBNO1	100	87.278	ENSACAG00000015441	SBNO1	88	87.278	Anolis_carolinensis
ENSG00000139697	SBNO1	100	98.780	ENSANAG00000029958	-	100	98.780	Aotus_nancymaae
ENSG00000139697	SBNO1	99	74.284	ENSACLG00000024913	sbno1	99	74.375	Astatotilapia_calliptera
ENSG00000139697	SBNO1	99	79.232	ENSAMXG00000019473	sbno1	99	79.516	Astyanax_mexicanus
ENSG00000139697	SBNO1	99	98.132	ENSBTAG00000020505	SBNO1	99	98.132	Bos_taurus
ENSG00000139697	SBNO1	100	98.923	ENSCJAG00000016599	SBNO1	100	98.923	Callithrix_jacchus
ENSG00000139697	SBNO1	100	97.993	ENSCAFG00000007503	SBNO1	100	97.993	Canis_familiaris
ENSG00000139697	SBNO1	100	97.272	ENSCAFG00020015363	SBNO1	100	97.272	Canis_lupus_dingo
ENSG00000139697	SBNO1	99	97.987	ENSCHIG00000008382	SBNO1	99	98.732	Capra_hircus
ENSG00000139697	SBNO1	100	98.349	ENSTSYG00000012749	SBNO1	100	98.349	Carlito_syrichta
ENSG00000139697	SBNO1	96	97.521	ENSCAPG00000000384	SBNO1	100	97.521	Cavia_aperea
ENSG00000139697	SBNO1	100	96.911	ENSCPOG00000008109	SBNO1	99	99.277	Cavia_porcellus
ENSG00000139697	SBNO1	100	94.548	ENSCCAG00000035316	SBNO1	100	94.548	Cebus_capucinus
ENSG00000139697	SBNO1	99	97.696	ENSCATG00000008239	SBNO1	99	99.169	Cercocebus_atys
ENSG00000139697	SBNO1	100	97.057	ENSCLAG00000008995	SBNO1	99	99.277	Chinchilla_lanigera
ENSG00000139697	SBNO1	83	99.655	ENSCSAG00000002064	SBNO1	100	99.655	Chlorocebus_sabaeus
ENSG00000139697	SBNO1	96	94.514	ENSCHOG00000008814	SBNO1	96	94.514	Choloepus_hoffmanni
ENSG00000139697	SBNO1	100	92.247	ENSCPBG00000025968	SBNO1	99	92.103	Chrysemys_picta_bellii
ENSG00000139697	SBNO1	100	94.194	ENSCANG00000042688	-	100	94.194	Colobus_angolensis_palliatus
ENSG00000139697	SBNO1	100	97.200	ENSCGRG00001017470	Sbno1	99	98.373	Cricetulus_griseus_chok1gshd
ENSG00000139697	SBNO1	100	97.200	ENSCGRG00000004756	Sbno1	99	98.373	Cricetulus_griseus_crigri
ENSG00000139697	SBNO1	99	74.508	ENSCSEG00000011919	sbno1	99	75.158	Cynoglossus_semilaevis
ENSG00000139697	SBNO1	99	75.404	ENSCVAG00000007038	sbno1	99	75.664	Cyprinodon_variegatus
ENSG00000139697	SBNO1	99	79.214	ENSDARG00000099080	sbno1	99	79.586	Danio_rerio
ENSG00000139697	SBNO1	100	96.857	ENSDNOG00000017147	SBNO1	98	97.739	Dasypus_novemcinctus
ENSG00000139697	SBNO1	100	83.202	ENSDORG00000015261	Sbno1	100	83.202	Dipodomys_ordii
ENSG00000139697	SBNO1	93	90.596	ENSETEG00000005620	SBNO1	93	90.596	Echinops_telfairi
ENSG00000139697	SBNO1	75	62.942	ENSEBUG00000013823	sbno1	93	62.815	Eptatretus_burgeri
ENSG00000139697	SBNO1	51	93.794	ENSEASG00005012595	-	92	93.794	Equus_asinus_asinus
ENSG00000139697	SBNO1	100	98.492	ENSECAG00000006127	SBNO1	100	98.492	Equus_caballus
ENSG00000139697	SBNO1	83	98.352	ENSEEUG00000003793	SBNO1	83	98.352	Erinaceus_europaeus
ENSG00000139697	SBNO1	99	77.707	ENSELUG00000002886	sbno1	99	77.778	Esox_lucius
ENSG00000139697	SBNO1	99	98.420	ENSFCAG00000015331	SBNO1	99	98.420	Felis_catus
ENSG00000139697	SBNO1	100	92.098	ENSFALG00000009273	SBNO1	100	92.175	Ficedula_albicollis
ENSG00000139697	SBNO1	99	95.471	ENSFDAG00000014232	SBNO1	99	95.471	Fukomys_damarensis
ENSG00000139697	SBNO1	99	76.025	ENSFHEG00000007360	sbno1	99	75.826	Fundulus_heteroclitus
ENSG00000139697	SBNO1	94	78.075	ENSGMOG00000018229	sbno1	99	78.659	Gadus_morhua
ENSG00000139697	SBNO1	88	92.283	ENSGALG00000003392	SBNO1	99	92.283	Gallus_gallus
ENSG00000139697	SBNO1	99	75.828	ENSGAFG00000003960	sbno1	99	75.840	Gambusia_affinis
ENSG00000139697	SBNO1	94	78.947	ENSGACG00000015633	sbno1	99	78.642	Gasterosteus_aculeatus
ENSG00000139697	SBNO1	97	94.840	ENSGAGG00000001065	SBNO1	100	91.314	Gopherus_agassizii
ENSG00000139697	SBNO1	100	99.928	ENSGGOG00000015000	SBNO1	100	99.928	Gorilla_gorilla
ENSG00000139697	SBNO1	99	68.616	ENSHBUG00000011910	sbno1	99	68.728	Haplochromis_burtoni
ENSG00000139697	SBNO1	100	97.128	ENSHGLG00000014165	-	99	99.277	Heterocephalus_glaber_female
ENSG00000139697	SBNO1	93	84.980	ENSHCOG00000003246	sbno1	95	84.980	Hippocampus_comes
ENSG00000139697	SBNO1	99	78.622	ENSIPUG00000015830	Sbno1	98	78.378	Ictalurus_punctatus
ENSG00000139697	SBNO1	100	98.204	ENSSTOG00000023221	SBNO1	99	99.458	Ictidomys_tridecemlineatus
ENSG00000139697	SBNO1	100	97.416	ENSJJAG00000001741	Sbno1	100	97.416	Jaculus_jaculus
ENSG00000139697	SBNO1	99	75.653	ENSKMAG00000009696	sbno1	99	75.702	Kryptolebias_marmoratus
ENSG00000139697	SBNO1	99	75.611	ENSLBEG00000007623	sbno1	99	75.821	Labrus_bergylta
ENSG00000139697	SBNO1	99	80.915	ENSLACG00000017227	SBNO1	99	83.387	Latimeria_chalumnae
ENSG00000139697	SBNO1	99	81.663	ENSLOCG00000005725	sbno1	97	81.805	Lepisosteus_oculatus
ENSG00000139697	SBNO1	100	96.985	ENSLAFG00000002135	SBNO1	100	96.985	Loxodonta_africana
ENSG00000139697	SBNO1	100	99.569	ENSMFAG00000031429	SBNO1	100	99.569	Macaca_fascicularis
ENSG00000139697	SBNO1	100	99.569	ENSMMUG00000011496	SBNO1	100	99.569	Macaca_mulatta
ENSG00000139697	SBNO1	100	97.703	ENSMLEG00000033260	SBNO1	99	100.000	Mandrillus_leucophaeus
ENSG00000139697	SBNO1	99	75.687	ENSMAMG00000005473	sbno1	99	75.828	Mastacembelus_armatus
ENSG00000139697	SBNO1	100	92.170	ENSMGAG00000003274	SBNO1	100	92.247	Meleagris_gallopavo
ENSG00000139697	SBNO1	50	92.561	ENSMAUG00000004834	-	100	92.561	Mesocricetus_auratus
ENSG00000139697	SBNO1	100	97.128	ENSMICG00000006573	-	100	97.128	Microcebus_murinus
ENSG00000139697	SBNO1	97	97.865	ENSMOCG00000009390	Sbno1	99	98.734	Microtus_ochrogaster
ENSG00000139697	SBNO1	99	71.791	ENSMMOG00000008691	sbno1	99	71.630	Mola_mola
ENSG00000139697	SBNO1	99	94.756	ENSMODG00000012470	SBNO1	98	94.756	Monodelphis_domestica
ENSG00000139697	SBNO1	99	75.140	ENSMALG00000001056	sbno1	99	75.350	Monopterus_albus
ENSG00000139697	SBNO1	99	97.198	MGP_CAROLIEiJ_G0027749	Sbno1	99	97.198	Mus_caroli
ENSG00000139697	SBNO1	99	97.557	ENSMUSG00000038095	Sbno1	100	96.696	Mus_musculus
ENSG00000139697	SBNO1	99	97.414	MGP_PahariEiJ_G0024329	Sbno1	100	96.569	Mus_pahari
ENSG00000139697	SBNO1	99	97.342	MGP_SPRETEiJ_G0028747	Sbno1	99	97.342	Mus_spretus
ENSG00000139697	SBNO1	100	98.277	ENSMPUG00000001658	SBNO1	100	98.277	Mustela_putorius_furo
ENSG00000139697	SBNO1	100	97.775	ENSMLUG00000017159	SBNO1	100	97.775	Myotis_lucifugus
ENSG00000139697	SBNO1	100	98.062	ENSNGAG00000012620	Sbno1	100	98.062	Nannospalax_galili
ENSG00000139697	SBNO1	99	74.374	ENSNBRG00000019189	sbno1	99	74.465	Neolamprologus_brichardi
ENSG00000139697	SBNO1	100	95.833	ENSNLEG00000001502	SBNO1	100	95.833	Nomascus_leucogenys
ENSG00000139697	SBNO1	62	86.957	ENSMEUG00000008768	-	93	90.506	Notamacropus_eugenii
ENSG00000139697	SBNO1	100	94.333	ENSOPRG00000011054	SBNO1	100	94.261	Ochotona_princeps
ENSG00000139697	SBNO1	100	97.198	ENSODEG00000009997	SBNO1	99	99.277	Octodon_degus
ENSG00000139697	SBNO1	99	75.546	ENSONIG00000015348	sbno1	99	75.772	Oreochromis_niloticus
ENSG00000139697	SBNO1	98	96.277	ENSOCUG00000002441	SBNO1	95	96.277	Oryctolagus_cuniculus
ENSG00000139697	SBNO1	99	74.754	ENSORLG00000001593	sbno1	99	74.782	Oryzias_latipes
ENSG00000139697	SBNO1	99	74.877	ENSORLG00020015216	sbno1	99	74.736	Oryzias_latipes_hni
ENSG00000139697	SBNO1	99	74.877	ENSORLG00015002726	sbno1	99	74.806	Oryzias_latipes_hsok
ENSG00000139697	SBNO1	99	75.053	ENSOMEG00000019313	sbno1	99	74.912	Oryzias_melastigma
ENSG00000139697	SBNO1	50	89.685	ENSOGAG00000010781	-	100	89.700	Otolemur_garnettii
ENSG00000139697	SBNO1	99	97.775	ENSOARG00000004404	SBNO1	99	97.775	Ovis_aries
ENSG00000139697	SBNO1	100	99.856	ENSPPAG00000024635	SBNO1	100	99.856	Pan_paniscus
ENSG00000139697	SBNO1	99	98.420	ENSPPRG00000022092	SBNO1	99	98.420	Panthera_pardus
ENSG00000139697	SBNO1	100	98.134	ENSPTIG00000017803	SBNO1	100	98.134	Panthera_tigris_altaica
ENSG00000139697	SBNO1	100	99.928	ENSPTRG00000005597	SBNO1	100	99.928	Pan_troglodytes
ENSG00000139697	SBNO1	100	99.641	ENSPANG00000011640	SBNO1	100	99.641	Papio_anubis
ENSG00000139697	SBNO1	99	80.143	ENSPKIG00000001441	sbno1	99	80.371	Paramormyrops_kingsleyae
ENSG00000139697	SBNO1	100	91.273	ENSPSIG00000009572	-	100	91.273	Pelodiscus_sinensis
ENSG00000139697	SBNO1	92	87.636	ENSPSIG00000009256	-	100	87.636	Pelodiscus_sinensis
ENSG00000139697	SBNO1	100	96.985	ENSPEMG00000016087	Sbno1	99	98.373	Peromyscus_maniculatus_bairdii
ENSG00000139697	SBNO1	99	94.113	ENSPCIG00000010985	SBNO1	99	94.329	Phascolarctos_cinereus
ENSG00000139697	SBNO1	99	76.127	ENSPFOG00000005069	sbno1	99	76.137	Poecilia_formosa
ENSG00000139697	SBNO1	99	75.986	ENSPLAG00000015015	sbno1	99	76.174	Poecilia_latipinna
ENSG00000139697	SBNO1	99	76.093	ENSPMEG00000021212	sbno1	99	76.104	Poecilia_mexicana
ENSG00000139697	SBNO1	99	75.740	ENSPREG00000017746	sbno1	99	75.753	Poecilia_reticulata
ENSG00000139697	SBNO1	100	99.425	ENSPPYG00000005084	SBNO1	100	99.425	Pongo_abelii
ENSG00000139697	SBNO1	89	92.455	ENSPCAG00000008634	SBNO1	88	92.424	Procavia_capensis
ENSG00000139697	SBNO1	100	98.205	ENSPCOG00000024277	SBNO1	99	99.273	Propithecus_coquereli
ENSG00000139697	SBNO1	87	99.008	ENSPVAG00000015304	SBNO1	87	99.008	Pteropus_vampyrus
ENSG00000139697	SBNO1	99	75.865	ENSPNYG00000004291	sbno1	99	75.879	Pundamilia_nyererei
ENSG00000139697	SBNO1	99	79.063	ENSPNAG00000015622	sbno1	99	78.992	Pygocentrus_nattereri
ENSG00000139697	SBNO1	99	97.342	ENSRNOG00000001064	Sbno1	99	99.457	Rattus_norvegicus
ENSG00000139697	SBNO1	100	99.641	ENSRROG00000034230	SBNO1	100	99.641	Rhinopithecus_roxellana
ENSG00000139697	SBNO1	96	93.750	ENSSBOG00000015422	SBNO1	100	93.750	Saimiri_boliviensis_boliviensis
ENSG00000139697	SBNO1	99	79.357	ENSSFOG00015019025	sbno1	99	80.000	Scleropages_formosus
ENSG00000139697	SBNO1	99	75.899	ENSSMAG00000013640	sbno1	99	76.110	Scophthalmus_maximus
ENSG00000139697	SBNO1	99	75.403	ENSSDUG00000023480	sbno1	99	75.403	Seriola_dumerili
ENSG00000139697	SBNO1	99	75.333	ENSSLDG00000007928	sbno1	99	75.333	Seriola_lalandi_dorsalis
ENSG00000139697	SBNO1	89	98.382	ENSSARG00000002594	SBNO1	89	98.382	Sorex_araneus
ENSG00000139697	SBNO1	100	88.873	ENSSPUG00000012640	SBNO1	100	89.088	Sphenodon_punctatus
ENSG00000139697	SBNO1	99	74.825	ENSSPAG00000016244	sbno1	99	74.895	Stegastes_partitus
ENSG00000139697	SBNO1	100	98.205	ENSSSCG00000009776	SBNO1	100	98.205	Sus_scrofa
ENSG00000139697	SBNO1	100	92.026	ENSTGUG00000005380	SBNO1	100	92.103	Taeniopygia_guttata
ENSG00000139697	SBNO1	99	75.581	ENSTRUG00000018490	sbno1	99	75.877	Takifugu_rubripes
ENSG00000139697	SBNO1	56	70.654	ENSTNIG00000013506	sbno1	99	71.252	Tetraodon_nigroviridis
ENSG00000139697	SBNO1	100	98.277	ENSUAMG00000019671	SBNO1	100	98.277	Ursus_americanus
ENSG00000139697	SBNO1	100	98.277	ENSUMAG00000004002	SBNO1	100	98.277	Ursus_maritimus
ENSG00000139697	SBNO1	95	93.478	ENSVPAG00000007024	SBNO1	95	93.478	Vicugna_pacos
ENSG00000139697	SBNO1	100	98.134	ENSVVUG00000027807	SBNO1	100	98.134	Vulpes_vulpes
ENSG00000139697	SBNO1	99	82.181	ENSXETG00000031930	SBNO1	99	82.214	Xenopus_tropicalis
ENSG00000139697	SBNO1	89	74.183	ENSXCOG00000011607	sbno1	95	74.840	Xiphophorus_couchianus
ENSG00000139697	SBNO1	99	75.952	ENSXMAG00000002140	sbno1	99	75.930	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0008150	biological_process	-	ND	Process