EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000140598 (Gene tree)
Gene ID
79631
Gene Symbol
EFL1
Alias
FLJ13119|FAM42A|HsT19294|RIA1|EFTUD1
Full Name
elongation factor like GTPase 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
132,544 bases
Position
chr15:82,130,220-82,262,763
Accession
25789
RBP type
canonical RBP
Summary
(Elongation Factor Like GTPase 1) is a Protein Coding gene. Diseases associated with EFL1 include Shwachman-Diamond Syndrome 2 and Shwachman-Diamond Syndrome 1. Among its related pathways are Ribosome biogenesis in eukaryotes. An important paralog of this gene is EEF2.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000268206GTP_EFTUPF00009.271.2e-6011
ENSP00000352418GTP_EFTUPF00009.276.5e-3911
ENSP00000452825GTP_EFTUPF00009.277.1e-2711
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000559429EFL1-206500--- (aa)--
ENST00000561340EFL1-209554--- (aa)--
ENST00000359445EFL1-2023470XM_011522000ENSP000003524181069 (aa)XP_011520302Q7Z2Z2
ENST00000558974EFL1-205542-ENSP0000045299016 (aa)-H0YKY7
ENST00000561389EFL1-210639-ENSP0000045268758 (aa)-H0YK75
ENST00000560095EFL1-207154--- (aa)--
ENST00000650113EFL1-2113546-ENSP00000497919366 (aa)--
ENST00000557939EFL1-204417-ENSP00000452825139 (aa)-H0YKI9
ENST00000561331EFL1-208557--- (aa)--
ENST00000268206EFL1-2013675-ENSP000002682061120 (aa)-Q7Z2Z2
ENST00000557844EFL1-203521-ENSP0000045418630 (aa)-H0YNW8
Gene Model
Click here to download ENSG00000140598's gene model file
Pathways
Pathway IDPathway NameSource
hsa03008Ribosome biogenesis in eukaryotesKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000140598Myocardial Infarction9.8093524E-004-
ENSG00000140598Alcoholism9.19017e-00522978509
ENSG00000140598Alcoholism7.19019e-00522978509
ENSG00000140598Transferrin4.576e-005-
ENSG00000140598Transferrin7.08e-005-
ENSG00000140598Platelet Function Tests9.0100000E-006-
ENSG00000140598Education3E-1027225129
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000140598rs8673711582146005?Cognitive ability29186694z score increase4.705EFO_0004337
ENSG00000140598rs21340461582232203?Cognitive ability29186694z score decrease5.579EFO_0004337
ENSG00000140598rs8673711582146005?Cognitive ability (MTAG)29186694z score increase6.43EFO_0004337|EFO_0004784
ENSG00000140598rs284208341582220780AEducational attainment (years of education)27225129NR unit decrease0.014275947EFO_0004784
ENSG00000140598rs124396191582254605TIntelligence (MTAG)29326435[0.012-0.025] unit decrease0.018942412EFO_0004337
ENSG00000140598rs19724601582238289AIntelligence (MTAG)29326435[0.013-0.025] unit decrease0.018744726EFO_0004337
ENSG00000140598rs26651031582140374TIntelligence (MTAG)29326435[0.013-0.024] unit increase0.018218447EFO_0004337
ENSG00000140598rs284208341582220780AIntelligence (MTAG)29326435[0.02-0.038] unit decrease0.028913617EFO_0004337
ENSG00000140598rs124396191582254605TCognitive performance30038396[0.014-0.026] unit decrease0.0199EFO_0008354
ENSG00000140598rs47789881582247996TGeneral cognitive ability29844566z-score decrease5.629EFO_0004337
ENSG00000140598rs26651031582140374TIntelligence29942086z-score increase5.904EFO_0004337
ENSG00000140598rs80259641582229429AIntelligence29942086z-score increase6.196EFO_0004337
ENSG00000140598rs47786651582144163AIntelligence29942086z-score increase5.889EFO_0004337
ENSG00000140598rs1114919841582195898?Menarche (age at onset)30595370EFO_0004703
ENSG00000140598rs669040721582133524GTourette syndrome308189901.3617901EFO_0004895
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000140598's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000140598EFL19149.057ENSG00000167658EEF29835.398
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000140598EFL19775.843ENSAPOG00000000188efl19968.014Acanthochromis_polyacanthus
ENSG00000140598EFL110096.667ENSAMEG00000006031EFL110093.174Ailuropoda_melanoleuca
ENSG00000140598EFL19678.249ENSACIG00000017802efl19969.054Amphilophus_citrinellus
ENSG00000140598EFL18682.000ENSAOCG00000024337-8284.615Amphiprion_ocellaris
ENSG00000140598EFL19777.528ENSAOCG00000023933efl19968.049Amphiprion_ocellaris
ENSG00000140598EFL19777.528ENSAPEG00000000262efl19968.629Amphiprion_percula
ENSG00000140598EFL19776.816ENSATEG00000012373efl110068.519Anabas_testudineus
ENSG00000140598EFL19977.877ENSAPLG00000011147EFL19977.877Anas_platyrhynchos
ENSG00000140598EFL19782.022ENSACAG00000011040EFL110074.470Anolis_carolinensis
ENSG00000140598EFL1100100.000ENSANAG00000027459EFL110098.036Aotus_nancymaae
ENSG00000140598EFL19777.528ENSACLG00000025780efl110068.170Astatotilapia_calliptera
ENSG00000140598EFL19976.389ENSAMXG00000019529efl110069.406Astyanax_mexicanus
ENSG00000140598EFL1100100.000ENSBTAG00000003410EFL110091.851Bos_taurus
ENSG00000140598EFL19938.889WBGene00010732K10C3.59257.658Caenorhabditis_elegans
ENSG00000140598EFL1100100.000ENSCJAG00000015607-9697.570Callithrix_jacchus
ENSG00000140598EFL110093.333ENSCAFG00000013671EFL110091.933Canis_familiaris
ENSG00000140598EFL110093.333ENSCAFG00020015837-8296.250Canis_lupus_dingo
ENSG00000140598EFL1100100.000ENSCHIG00000001883EFL110091.851Capra_hircus
ENSG00000140598EFL1100100.000ENSTSYG00000000348EFL110095.179Carlito_syrichta
ENSG00000140598EFL110096.667ENSCAPG00000017944EFL110076.828Cavia_aperea
ENSG00000140598EFL110096.667ENSCPOG00000001924EFL110090.691Cavia_porcellus
ENSG00000140598EFL1100100.000ENSCCAG00000034450EFL110098.316Cebus_capucinus
ENSG00000140598EFL110097.589ENSCATG00000031678-10097.589Cercocebus_atys
ENSG00000140598EFL19279.403ENSCATG00000030744-8687.860Cercocebus_atys
ENSG00000140598EFL19896.089ENSCLAG00000010155EFL110090.337Chinchilla_lanigera
ENSG00000140598EFL110097.768ENSCSAG00000015165EFL110097.768Chlorocebus_sabaeus
ENSG00000140598EFL16997.500ENSCHOG00000004666-56100.000Choloepus_hoffmanni
ENSG00000140598EFL17691.978ENSCHOG00000014029EFL17891.978Choloepus_hoffmanni
ENSG00000140598EFL19885.196ENSCPBG00000017638EFL19979.141Chrysemys_picta_bellii
ENSG00000140598EFL19667.507ENSCING00000000792-9963.974Ciona_intestinalis
ENSG00000140598EFL19766.574ENSCSAVG00000001787-9962.156Ciona_savignyi
ENSG00000140598EFL110098.036ENSCANG00000038093EFL110098.036Colobus_angolensis_palliatus
ENSG00000140598EFL110093.333ENSCGRG00001010826Efl110087.145Cricetulus_griseus_chok1gshd
ENSG00000140598EFL19795.506ENSCGRG00000003273Efl110090.869Cricetulus_griseus_crigri
ENSG00000140598EFL19873.407ENSCSEG00000005856efl19965.137Cynoglossus_semilaevis
ENSG00000140598EFL19765.998ENSCVAG00000011863efl19565.807Cyprinodon_variegatus
ENSG00000140598EFL19776.190ENSDARG00000079672efl19870.384Danio_rerio
ENSG00000140598EFL19381.481ENSDARG00000117086CABZ01090544.19081.481Danio_rerio
ENSG00000140598EFL1100100.000ENSDNOG00000006097EFL110093.351Dasypus_novemcinctus
ENSG00000140598EFL19793.258ENSDORG00000000719Efl110088.220Dipodomys_ordii
ENSG00000140598EFL19555.367FBgn0053158CG331589945.164Drosophila_melanogaster
ENSG00000140598EFL19783.077ENSETEG00000004309EFL110083.077Echinops_telfairi
ENSG00000140598EFL19569.602ENSEBUG00000010738efl19967.773Eptatretus_burgeri
ENSG00000140598EFL110093.333ENSEASG00005007108EFL110090.277Equus_asinus_asinus
ENSG00000140598EFL19987.746ENSECAG00000016354EFL19989.888Equus_caballus
ENSG00000140598EFL17586.861ENSEEUG00000006326EFL17986.494Erinaceus_europaeus
ENSG00000140598EFL19873.842ENSELUG00000002520efl19876.976Esox_lucius
ENSG00000140598EFL110096.667ENSFCAG00000007741EFL110090.536Felis_catus
ENSG00000140598EFL19884.078ENSFALG00000011103EFL110077.895Ficedula_albicollis
ENSG00000140598EFL110096.667ENSFDAG00000009023EFL110089.894Fukomys_damarensis
ENSG00000140598EFL19874.652ENSFHEG00000017795efl110067.436Fundulus_heteroclitus
ENSG00000140598EFL19674.011ENSGMOG00000005041efl110064.476Gadus_morhua
ENSG00000140598EFL19883.240ENSGALG00000006225EFL110077.846Gallus_gallus
ENSG00000140598EFL19374.074ENSGAFG00000004687-8480.488Gambusia_affinis
ENSG00000140598EFL19672.521ENSGACG00000012495efl19966.460Gasterosteus_aculeatus
ENSG00000140598EFL19884.637ENSGAGG00000022841EFL110079.265Gopherus_agassizii
ENSG00000140598EFL19793.480ENSGGOG00000005017EFL110093.480Gorilla_gorilla
ENSG00000140598EFL19196.226ENSGGOG00000008894-9784.053Gorilla_gorilla
ENSG00000140598EFL19776.190ENSHBUG00000022667efl110068.021Haplochromis_burtoni
ENSG00000140598EFL110096.667ENSHGLG00000011798EFL110087.323Heterocephalus_glaber_female
ENSG00000140598EFL110096.667ENSHGLG00100010319EFTUD19996.341Heterocephalus_glaber_male
ENSG00000140598EFL19774.930ENSHCOG00000007325efl19967.982Hippocampus_comes
ENSG00000140598EFL19678.028ENSIPUG00000023360EFTUD19967.968Ictalurus_punctatus
ENSG00000140598EFL110096.667ENSSTOG00000030430-8389.247Ictidomys_tridecemlineatus
ENSG00000140598EFL1100100.000ENSSTOG00000022945EFL110089.805Ictidomys_tridecemlineatus
ENSG00000140598EFL19796.067ENSJJAG00000018598Efl110090.603Jaculus_jaculus
ENSG00000140598EFL19374.074ENSKMAG00000002771-9768.404Kryptolebias_marmoratus
ENSG00000140598EFL19066.667ENSLBEG00000009564-7966.292Labrus_bergylta
ENSG00000140598EFL19775.843ENSLBEG00000015269efl19966.990Labrus_bergylta
ENSG00000140598EFL19878.273ENSLACG00000016121EFL110071.941Latimeria_chalumnae
ENSG00000140598EFL19776.471ENSLOCG00000012862efl19971.189Lepisosteus_oculatus
ENSG00000140598EFL110096.667ENSLAFG00000012504EFL110090.780Loxodonta_africana
ENSG00000140598EFL18380.921ENSMFAG00000031099-9086.420Macaca_fascicularis
ENSG00000140598EFL110097.768ENSMFAG00000032657-10097.768Macaca_fascicularis
ENSG00000140598EFL110097.755ENSMMUG00000023353EFL110097.755Macaca_mulatta
ENSG00000140598EFL110097.946ENSMNEG00000041671-10097.942Macaca_nemestrina
ENSG00000140598EFL18387.171ENSMNEG00000042570-9090.535Macaca_nemestrina
ENSG00000140598EFL110097.857ENSMLEG00000033735EFL110097.857Mandrillus_leucophaeus
ENSG00000140598EFL19778.090ENSMAMG00000011336efl19968.435Mastacembelus_armatus
ENSG00000140598EFL19777.528ENSMZEG00005003012efl110068.170Maylandia_zebra
ENSG00000140598EFL19882.778ENSMGAG00000007991EFL110078.515Meleagris_gallopavo
ENSG00000140598EFL110096.667ENSMAUG00000010709Efl110090.426Mesocricetus_auratus
ENSG00000140598EFL1100100.000ENSMICG00000027853EFL110094.491Microcebus_murinus
ENSG00000140598EFL19894.693ENSMOCG00000007470Efl110089.894Microtus_ochrogaster
ENSG00000140598EFL110070.000ENSMMOG00000015370efl110064.880Mola_mola
ENSG00000140598EFL110093.333ENSMODG00000019386EFL110084.615Monodelphis_domestica
ENSG00000140598EFL19876.602ENSMALG00000018810efl110067.393Monopterus_albus
ENSG00000140598EFL19795.506MGP_CAROLIEiJ_G0029936Efl110094.672Mus_caroli
ENSG00000140598EFL19795.506ENSMUSG00000038563Efl110094.444Mus_musculus
ENSG00000140598EFL19794.944MGP_PahariEiJ_G0013157Efl110094.017Mus_pahari
ENSG00000140598EFL19995.588MGP_SPRETEiJ_G0031038Efl19990.741Mus_spretus
ENSG00000140598EFL110096.667ENSMPUG00000015494EFL110089.273Mustela_putorius_furo
ENSG00000140598EFL19968.478ENSMLUG00000001470-10094.444Myotis_lucifugus
ENSG00000140598EFL110096.667ENSNGAG00000017740Efl110090.691Nannospalax_galili
ENSG00000140598EFL19092.593ENSNLEG00000031827-9775.179Nomascus_leucogenys
ENSG00000140598EFL19798.844ENSNLEG00000010679EFL110098.844Nomascus_leucogenys
ENSG00000140598EFL110090.000ENSMEUG00000012049-7094.340Notamacropus_eugenii
ENSG00000140598EFL110096.667ENSOPRG00000001514-10095.294Ochotona_princeps
ENSG00000140598EFL16390.244ENSOPRG00000012488-6390.244Ochotona_princeps
ENSG00000140598EFL19895.531ENSODEG00000016193EFL110089.894Octodon_degus
ENSG00000140598EFL19777.247ENSONIG00000003394efl110068.021Oreochromis_niloticus
ENSG00000140598EFL19082.012ENSOANG00000011993-10078.316Ornithorhynchus_anatinus
ENSG00000140598EFL19795.506ENSOCUG00000012163EFL110090.489Oryctolagus_cuniculus
ENSG00000140598EFL18678.000ENSORLG00000029029-7282.051Oryzias_latipes
ENSG00000140598EFL16663.092ENSORLG00000020390efl110064.095Oryzias_latipes
ENSG00000140598EFL19772.191ENSORLG00015012031efl19967.231Oryzias_latipes_hsok
ENSG00000140598EFL19774.085ENSOMEG00000022784efl19967.409Oryzias_melastigma
ENSG00000140598EFL1100100.000ENSOARG00000014452EFL110092.035Ovis_aries
ENSG00000140598EFL1100100.000ENSPPAG00000027322-9794.606Pan_paniscus
ENSG00000140598EFL197100.000ENSPPAG00000039672EFL110093.393Pan_paniscus
ENSG00000140598EFL110096.667ENSPPRG00000002193EFL110091.161Panthera_pardus
ENSG00000140598EFL110096.667ENSPTIG00000007053EFL110090.982Panthera_tigris_altaica
ENSG00000140598EFL197100.000ENSPTRG00000050545-9787.732Pan_troglodytes
ENSG00000140598EFL1100100.000ENSPTRG00000007374EFL110099.286Pan_troglodytes
ENSG00000140598EFL110097.946ENSPANG00000015635-10097.942Papio_anubis
ENSG00000140598EFL18383.553ENSPANG00000031329-9087.037Papio_anubis
ENSG00000140598EFL19974.903ENSPKIG00000018456efl110068.004Paramormyrops_kingsleyae
ENSG00000140598EFL19883.799ENSPSIG00000007790EFL110078.984Pelodiscus_sinensis
ENSG00000140598EFL19761.080ENSPMAG00000002026efl110060.708Petromyzon_marinus
ENSG00000140598EFL110090.000ENSPCIG00000004372EFL110084.602Phascolarctos_cinereus
ENSG00000140598EFL19674.859ENSPFOG00000018687efl19967.318Poecilia_formosa
ENSG00000140598EFL19674.859ENSPLAG00000001988efl19967.407Poecilia_latipinna
ENSG00000140598EFL19675.211ENSPMEG00000000402efl19967.498Poecilia_mexicana
ENSG00000140598EFL19675.141ENSPREG00000022085efl19967.527Poecilia_reticulata
ENSG00000140598EFL110096.667ENSPPYG00000006744-10073.196Pongo_abelii
ENSG00000140598EFL1100100.000ENSPPYG00000006724EFL110099.464Pongo_abelii
ENSG00000140598EFL1100100.000ENSPCAG00000011842-9996.154Procavia_capensis
ENSG00000140598EFL1100100.000ENSPCOG00000017475-9287.431Propithecus_coquereli
ENSG00000140598EFL1100100.000ENSPVAG00000003189EFL110091.250Pteropus_vampyrus
ENSG00000140598EFL18680.000ENSPNYG00000019406efl110063.428Pundamilia_nyererei
ENSG00000140598EFL19777.159ENSPNAG00000012104efl19970.123Pygocentrus_nattereri
ENSG00000140598EFL110093.333ENSRNOG00000032723Efl110089.894Rattus_norvegicus
ENSG00000140598EFL110098.036ENSRBIG00000040576EFL110098.036Rhinopithecus_bieti
ENSG00000140598EFL110096.667ENSRROG00000031475EFL110094.107Rhinopithecus_roxellana
ENSG00000140598EFL19551.389YNL163CRIA18646.833Saccharomyces_cerevisiae
ENSG00000140598EFL1100100.000ENSSBOG00000018280EFL110097.768Saimiri_boliviensis_boliviensis
ENSG00000140598EFL110090.000ENSSHAG00000018863EFL110080.159Sarcophilus_harrisii
ENSG00000140598EFL19776.751ENSSFOG00015016244efl110070.226Scleropages_formosus
ENSG00000140598EFL19674.788ENSSMAG00000016928efl19967.407Scophthalmus_maximus
ENSG00000140598EFL19678.249ENSSDUG00000013271efl19968.347Seriola_dumerili
ENSG00000140598EFL19678.249ENSSLDG00000014655efl19968.612Seriola_lalandi_dorsalis
ENSG00000140598EFL19883.240ENSSPUG00000000941EFL110077.273Sphenodon_punctatus
ENSG00000140598EFL19777.247ENSSPAG00000011885efl19967.898Stegastes_partitus
ENSG00000140598EFL1100100.000ENSSSCG00000001792EFL110092.730Sus_scrofa
ENSG00000140598EFL19784.831ENSTGUG00000007850EFL110078.457Taeniopygia_guttata
ENSG00000140598EFL110073.333ENSTNIG00000003399efl110061.053Tetraodon_nigroviridis
ENSG00000140598EFL17796.914ENSTBEG00000011804EFL17996.914Tupaia_belangeri
ENSG00000140598EFL1100100.000ENSTTRG00000011243EFL110092.150Tursiops_truncatus
ENSG00000140598EFL110096.667ENSUAMG00000022106EFL110093.174Ursus_americanus
ENSG00000140598EFL110096.667ENSUMAG00000010303EFL110093.351Ursus_maritimus
ENSG00000140598EFL110096.667ENSVPAG00000005735EFL19397.951Vicugna_pacos
ENSG00000140598EFL110093.333ENSVVUG00000004967EFL110091.933Vulpes_vulpes
ENSG00000140598EFL19880.447ENSXETG00000015701EFL110074.779Xenopus_tropicalis
ENSG00000140598EFL19372.222ENSXCOG00000011639-9677.739Xiphophorus_couchianus
ENSG00000140598EFL19874.930ENSXMAG00000023705efl110067.197Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003746translation elongation factor activity-IEAFunction
GO:0003924GTPase activity21873635.IBAFunction
GO:0003924GTPase activity21536732.IDAFunction
GO:0005525GTP binding-IEAFunction
GO:0005829cytosol21873635.IBAComponent
GO:0006414translational elongation-IEAProcess
GO:0042256mature ribosome assembly21873635.IBAProcess
GO:0042256mature ribosome assembly21536732.IMPProcess
GO:0043022ribosome binding21873635.IBAFunction
GO:0043022ribosome binding21536732.IMPFunction
GO:0046039GTP metabolic process21536732.IDAProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent

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