EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000140829 (Gene tree)
Gene ID
9785
Gene Symbol
DHX38
Alias
PRP16|KIAA0224|hPrp16|PRPF16|DDX38
Full Name
DEAH-box helicase 38
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
19,351 bases
Position
chr16:72,093,562-72,112,912
Accession
17211
RBP type
canonical RBP
Summary
DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene is a member of the DEAD/H box family of splicing factors. This protein resembles yeast Prp16 more closely than other DEAD/H family members. It is an ATPase and essential for the catalytic step II in pre-mRNA splicing process. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000268482DEADPF00270.291.1e-0611
ENSP00000268482HA2PF04408.236.9e-1911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
23096351Structural analysis of the C-terminal domain of the spliceosomal helicase Prp22.Biol Chem2012 Sep 8Kudlinzki Ddoi: 10.1515/hsz-2012-0158.
9550699The DEAH-box splicing factor Prp16 unwinds RNA duplexes in vitro.Curr Biol1998 Apr 9Wang Y-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000569952DHX38-213638--- (aa)--
ENST00000567552DHX38-2111028--- (aa)--
ENST00000566329DHX38-207683--- (aa)--
ENST00000566489DHX38-208574-ENSP00000457887123 (aa)-H3BV01
ENST00000564307DHX38-205785--- (aa)--
ENST00000569935DHX38-212907--- (aa)--
ENST00000566794DHX38-209710-ENSP00000455939138 (aa)-H3BQT9
ENST00000562774DHX38-202500-ENSP00000462965128 (aa)-J3KTG2
ENST00000567142DHX38-210892-ENSP00000454521191 (aa)-H3BMS7
ENST00000563650DHX38-2031123--- (aa)--
ENST00000564622DHX38-206390--- (aa)--
ENST00000563819DHX38-204706-ENSP00000462397187 (aa)-J3KSA8
ENST00000579387DHX38-2142258-ENSP00000462149142 (aa)-J3KRT1
ENST00000268482DHX38-2014608XM_005256269ENSP000002684821227 (aa)XP_005256326Q92620
Gene Model
Click here to download ENSG00000140829's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000140829Alpha-Globulins5.1770000E-008-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000140829rs93026351672110275CBlood protein levels29875488[0.72-0.84] unit increase0.78EFO_0007937
ENSG00000140829rs93026351672110275CBlood protein levels29875488[0.42-0.54] unit increase0.48EFO_0007937
ENSG00000140829rs93026351672110275CBlood protein levels28240269[0.26-0.49] unit increase0.3717EFO_0004459
ENSG00000140829rs93026351672110275CBlood protein levels28240269[0.77-0.98] unit increase0.8758EFO_0004640
ENSG00000140829rs10503621672096916ACoronary artery disease29212778[0.027-0.05] unit increase0.0386EFO_0000378
ENSG00000140829rs10503621672096916ACoronary artery disease29212778[0.025-0.046] unit increase0.0352EFO_0000378
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000140829's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000140829DHX388348.148ENSG00000204560DHX169449.146
ENSG00000140829DHX388136.752ENSG00000101452DHX359144.548
ENSG00000140829DHX387440.594ENSG00000108406DHX408851.271
ENSG00000140829DHX385031.010ENSG00000174953DHX369932.569
ENSG00000140829DHX385130.710ENSG00000089876DHX328730.710
ENSG00000140829DHX385538.571ENSG00000163214DHX577146.296
ENSG00000140829DHX386832.110ENSG00000132153DHX305031.088
ENSG00000140829DHX386831.522ENSG00000150990DHX376942.437
ENSG00000140829DHX388348.598ENSG00000067596DHX88736.066
ENSG00000140829DHX387134.409ENSG00000144045DQX19040.187
ENSG00000140829DHX387841.905ENSG00000005100DHX339142.478
ENSG00000140829DHX388741.176ENSG00000109606DHX158245.745
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000140829DHX389986.842ENSAPOG00000010788dhx389981.484Acanthochromis_polyacanthus
ENSG00000140829DHX3899100.000ENSAMEG00000002227DHX389997.966Ailuropoda_melanoleuca
ENSG00000140829DHX389987.895ENSACIG00000000573dhx389981.360Amphilophus_citrinellus
ENSG00000140829DHX389987.368ENSAOCG00000007610dhx389982.823Amphiprion_ocellaris
ENSG00000140829DHX389381.513ENSAOCG00000013483-9879.510Amphiprion_ocellaris
ENSG00000140829DHX389986.842ENSAPEG00000011410dhx389981.320Amphiprion_percula
ENSG00000140829DHX389985.789ENSATEG00000004692dhx389980.048Anabas_testudineus
ENSG00000140829DHX389995.263ENSAPLG00000015279DHX3810092.806Anas_platyrhynchos
ENSG00000140829DHX389994.211ENSACAG00000008115DHX3810080.128Anolis_carolinensis
ENSG00000140829DHX3810099.185ENSANAG00000022259DHX3810099.185Aotus_nancymaae
ENSG00000140829DHX389986.316ENSACLG00000001837dhx389979.483Astatotilapia_calliptera
ENSG00000140829DHX389781.043ENSAMXG00000004396dhx389780.498Astyanax_mexicanus
ENSG00000140829DHX3899100.000ENSBTAG00000013265DHX3810096.985Bos_taurus
ENSG00000140829DHX389661.111WBGene00003389mog-18860.624Caenorhabditis_elegans
ENSG00000140829DHX3810099.267ENSCJAG00000015103DHX3810099.267Callithrix_jacchus
ENSG00000140829DHX3899100.000ENSCAFG00000020228DHX3810097.718Canis_familiaris
ENSG00000140829DHX389999.474ENSCAFG00020020392DHX3810097.150Canis_lupus_dingo
ENSG00000140829DHX3899100.000ENSCHIG00000027105DHX3810097.229Capra_hircus
ENSG00000140829DHX3810098.697ENSTSYG00000012023DHX3810098.697Carlito_syrichta
ENSG00000140829DHX389999.474ENSCAPG00000016032DHX3810096.847Cavia_aperea
ENSG00000140829DHX389999.474ENSCPOG00000013965DHX389997.801Cavia_porcellus
ENSG00000140829DHX3810099.185ENSCCAG00000031157DHX3810099.185Cebus_capucinus
ENSG00000140829DHX3899100.000ENSCATG00000036889DHX3810092.794Cercocebus_atys
ENSG00000140829DHX389999.474ENSCLAG00000008250DHX3810097.963Chinchilla_lanigera
ENSG00000140829DHX3810099.430ENSCSAG00000004218DHX3810099.430Chlorocebus_sabaeus
ENSG00000140829DHX389386.555ENSCHOG00000009444-10093.796Choloepus_hoffmanni
ENSG00000140829DHX389995.263ENSCPBG00000027010DHX3810091.512Chrysemys_picta_bellii
ENSG00000140829DHX389762.756ENSCING00000003597-9863.206Ciona_intestinalis
ENSG00000140829DHX389967.895ENSCSAVG00000001117-10079.873Ciona_savignyi
ENSG00000140829DHX3810099.348ENSCANG00000039299DHX3810099.348Colobus_angolensis_palliatus
ENSG00000140829DHX3899100.000ENSCGRG00001021542Dhx3810097.963Cricetulus_griseus_chok1gshd
ENSG00000140829DHX3899100.000ENSCGRG00000017386Dhx3810097.963Cricetulus_griseus_crigri
ENSG00000140829DHX389984.737ENSCSEG00000008437dhx389979.649Cynoglossus_semilaevis
ENSG00000140829DHX389985.263ENSCVAG00000023150dhx389980.239Cyprinodon_variegatus
ENSG00000140829DHX389983.684ENSDARG00000100013dhx389979.857Danio_rerio
ENSG00000140829DHX389999.474ENSDNOG00000006717DHX3810097.718Dasypus_novemcinctus
ENSG00000140829DHX3899100.000ENSDORG00000005226Dhx3810098.453Dipodomys_ordii
ENSG00000140829DHX389963.684FBgn0026713l(1)G000710073.198Drosophila_melanogaster
ENSG00000140829DHX388499.065ENSETEG00000014663-67100.000Echinops_telfairi
ENSG00000140829DHX389981.053ENSEBUG00000005875dhx389971.938Eptatretus_burgeri
ENSG00000140829DHX3899100.000ENSEASG00005013249DHX3810097.833Equus_asinus_asinus
ENSG00000140829DHX3899100.000ENSECAG00000000526DHX389997.881Equus_caballus
ENSG00000140829DHX389984.211ENSELUG00000014379dhx389975.041Esox_lucius
ENSG00000140829DHX3899100.000ENSFCAG00000005831DHX3810097.963Felis_catus
ENSG00000140829DHX389995.263ENSFALG00000002671DHX389987.350Ficedula_albicollis
ENSG00000140829DHX389999.474ENSFDAG00000015601DHX3810097.637Fukomys_damarensis
ENSG00000140829DHX389986.842ENSFHEG00000006031dhx389980.990Fundulus_heteroclitus
ENSG00000140829DHX389985.864ENSGMOG00000002840dhx389980.766Gadus_morhua
ENSG00000140829DHX389995.263ENSGALG00000000787DHX389989.512Gallus_gallus
ENSG00000140829DHX389985.263ENSGAFG00000017271dhx389980.080Gambusia_affinis
ENSG00000140829DHX389984.211ENSGACG00000015776dhx389980.949Gasterosteus_aculeatus
ENSG00000140829DHX389995.263ENSGAGG00000015601DHX3810091.269Gopherus_agassizii
ENSG00000140829DHX3810099.919ENSGGOG00000013052DHX3810099.919Gorilla_gorilla
ENSG00000140829DHX389987.368ENSHBUG00000013363dhx389980.302Haplochromis_burtoni
ENSG00000140829DHX3899100.000ENSHGLG00000013308DHX3810098.044Heterocephalus_glaber_female
ENSG00000140829DHX3810097.229ENSHGLG00100015625DHX3810097.229Heterocephalus_glaber_male
ENSG00000140829DHX389984.737ENSHCOG00000003102dhx389980.000Hippocampus_comes
ENSG00000140829DHX389987.368ENSIPUG00000006233DHX389982.711Ictalurus_punctatus
ENSG00000140829DHX3899100.000ENSSTOG00000000534DHX3810098.127Ictidomys_tridecemlineatus
ENSG00000140829DHX3899100.000ENSJJAG00000015149Dhx389999.221Jaculus_jaculus
ENSG00000140829DHX389985.263ENSKMAG00000006694dhx389981.180Kryptolebias_marmoratus
ENSG00000140829DHX389983.158ENSLBEG00000026364dhx389980.513Labrus_bergylta
ENSG00000140829DHX389991.053ENSLACG00000013007DHX389982.386Latimeria_chalumnae
ENSG00000140829DHX389987.895ENSLOCG00000004169dhx389983.227Lepisosteus_oculatus
ENSG00000140829DHX3899100.000ENSLAFG00000016360DHX3810097.801Loxodonta_africana
ENSG00000140829DHX3810099.511ENSMFAG00000031852DHX3810099.511Macaca_fascicularis
ENSG00000140829DHX3810099.430ENSMMUG00000000677DHX3810099.430Macaca_mulatta
ENSG00000140829DHX3810099.511ENSMNEG00000045083DHX3810099.511Macaca_nemestrina
ENSG00000140829DHX3810099.430ENSMLEG00000029417DHX3810099.430Mandrillus_leucophaeus
ENSG00000140829DHX389987.368ENSMAMG00000021512dhx389980.430Mastacembelus_armatus
ENSG00000140829DHX389986.842ENSMZEG00005014283dhx389977.866Maylandia_zebra
ENSG00000140829DHX389995.263ENSMGAG00000008791DHX389992.705Meleagris_gallopavo
ENSG00000140829DHX3899100.000ENSMAUG00000006330Dhx3810099.314Mesocricetus_auratus
ENSG00000140829DHX3810098.533ENSMICG00000011402DHX3810098.533Microcebus_murinus
ENSG00000140829DHX3899100.000ENSMOCG00000016798Dhx3810093.821Microtus_ochrogaster
ENSG00000140829DHX389987.368ENSMMOG00000016558dhx389982.082Mola_mola
ENSG00000140829DHX3810095.366ENSMODG00000002549DHX3810095.366Monodelphis_domestica
ENSG00000140829DHX389986.842ENSMALG00000021005dhx389979.952Monopterus_albus
ENSG00000140829DHX3899100.000MGP_CAROLIEiJ_G0031541Dhx3810097.150Mus_caroli
ENSG00000140829DHX3899100.000ENSMUSG00000037993Dhx3810097.231Mus_musculus
ENSG00000140829DHX3899100.000MGP_PahariEiJ_G0023141Dhx3810097.394Mus_pahari
ENSG00000140829DHX3899100.000MGP_SPRETEiJ_G0032659Dhx3810097.394Mus_spretus
ENSG00000140829DHX3899100.000ENSMPUG00000007766DHX3810097.718Mustela_putorius_furo
ENSG00000140829DHX389998.947ENSMLUG00000013866DHX3810097.637Myotis_lucifugus
ENSG00000140829DHX3899100.000ENSNGAG00000014084Dhx3810098.044Nannospalax_galili
ENSG00000140829DHX389987.368ENSNBRG00000010899dhx389979.291Neolamprologus_brichardi
ENSG00000140829DHX3810099.185ENSNLEG00000005630DHX3810099.185Nomascus_leucogenys
ENSG00000140829DHX389996.316ENSMEUG00000007747-7296.653Notamacropus_eugenii
ENSG00000140829DHX389990.000ENSOPRG00000012142-10083.157Ochotona_princeps
ENSG00000140829DHX389898.404ENSOPRG00000001884DHX389995.421Ochotona_princeps
ENSG00000140829DHX3899100.000ENSODEG00000015472DHX3810097.392Octodon_degus
ENSG00000140829DHX389986.316ENSONIG00000005916dhx389980.461Oreochromis_niloticus
ENSG00000140829DHX389998.947ENSOCUG00000009067DHX3810097.555Oryctolagus_cuniculus
ENSG00000140829DHX389985.263ENSORLG00000007853dhx389980.398Oryzias_latipes
ENSG00000140829DHX389985.263ENSORLG00020009844dhx389980.398Oryzias_latipes_hni
ENSG00000140829DHX389985.263ENSORLG00015007999dhx389980.478Oryzias_latipes_hsok
ENSG00000140829DHX389984.737ENSOMEG00000001782dhx389980.766Oryzias_melastigma
ENSG00000140829DHX3810097.640ENSOGAG00000008658DHX3810097.640Otolemur_garnettii
ENSG00000140829DHX3899100.000ENSOARG00000003723DHX3810093.095Ovis_aries
ENSG00000140829DHX3810099.837ENSPPAG00000042488DHX3810099.837Pan_paniscus
ENSG00000140829DHX3899100.000ENSPPRG00000008930DHX3810097.963Panthera_pardus
ENSG00000140829DHX3899100.000ENSPTIG00000017274DHX3810097.963Panthera_tigris_altaica
ENSG00000140829DHX3810099.756ENSPTRG00000008338DHX3810099.756Pan_troglodytes
ENSG00000140829DHX3810099.430ENSPANG00000022057DHX3810099.430Papio_anubis
ENSG00000140829DHX389984.737ENSPKIG00000009708dhx389981.431Paramormyrops_kingsleyae
ENSG00000140829DHX389984.737ENSPMGG00000006063dhx389978.935Periophthalmus_magnuspinnatus
ENSG00000140829DHX3899100.000ENSPEMG00000008011Dhx3810098.046Peromyscus_maniculatus_bairdii
ENSG00000140829DHX3810095.041ENSPCIG00000001712DHX3810095.179Phascolarctos_cinereus
ENSG00000140829DHX389985.789ENSPFOG00000001246dhx389979.715Poecilia_formosa
ENSG00000140829DHX389985.789ENSPLAG00000004022dhx389980.159Poecilia_latipinna
ENSG00000140829DHX389986.316ENSPMEG00000015475dhx389980.398Poecilia_mexicana
ENSG00000140829DHX389986.316ENSPREG00000023207dhx389981.195Poecilia_reticulata
ENSG00000140829DHX3810098.697ENSPPYG00000007515DHX3810098.697Pongo_abelii
ENSG00000140829DHX389295.471ENSPCAG00000010592DHX389395.471Procavia_capensis
ENSG00000140829DHX389999.474ENSPCOG00000027770DHX3810098.452Propithecus_coquereli
ENSG00000140829DHX3899100.000ENSPVAG00000010259DHX3810097.387Pteropus_vampyrus
ENSG00000140829DHX389986.842ENSPNYG00000013335dhx389981.826Pundamilia_nyererei
ENSG00000140829DHX389985.263ENSPNAG00000004859dhx389981.422Pygocentrus_nattereri
ENSG00000140829DHX3899100.000ENSRNOG00000014619Dhx3810097.555Rattus_norvegicus
ENSG00000140829DHX3810099.511ENSRBIG00000025475DHX3810099.511Rhinopithecus_bieti
ENSG00000140829DHX3810099.511ENSRROG00000028630DHX3810099.511Rhinopithecus_roxellana
ENSG00000140829DHX387261.702YKR086WPRP167149.361Saccharomyces_cerevisiae
ENSG00000140829DHX3810099.104ENSSBOG00000021842DHX3810099.104Saimiri_boliviensis_boliviensis
ENSG00000140829DHX3810085.737ENSSHAG00000016871DHX3810085.761Sarcophilus_harrisii
ENSG00000140829DHX389984.211ENSSFOG00015014930dhx389981.225Scleropages_formosus
ENSG00000140829DHX389985.263ENSSMAG00000000095dhx389980.176Scophthalmus_maximus
ENSG00000140829DHX389986.842ENSSDUG00000001413dhx389981.260Seriola_dumerili
ENSG00000140829DHX389986.842ENSSLDG00000021050dhx389978.514Seriola_lalandi_dorsalis
ENSG00000140829DHX389986.842ENSSPAG00000020537dhx389982.024Stegastes_partitus
ENSG00000140829DHX3899100.000ENSSSCG00000002748DHX3810097.718Sus_scrofa
ENSG00000140829DHX389995.263ENSTGUG00000008196DHX389985.714Taeniopygia_guttata
ENSG00000140829DHX389986.842ENSTRUG00000017588dhx389981.109Takifugu_rubripes
ENSG00000140829DHX389984.896ENSTNIG00000009345dhx389978.849Tetraodon_nigroviridis
ENSG00000140829DHX3810089.431ENSTBEG00000001426DHX3810085.982Tupaia_belangeri
ENSG00000140829DHX3810092.176ENSTTRG00000001914DHX3810091.850Tursiops_truncatus
ENSG00000140829DHX3899100.000ENSUAMG00000020435DHX3810097.884Ursus_americanus
ENSG00000140829DHX3899100.000ENSUMAG00000018189DHX3810096.659Ursus_maritimus
ENSG00000140829DHX3899100.000ENSVVUG00000017474DHX3810097.718Vulpes_vulpes
ENSG00000140829DHX389782.068ENSXETG00000023447dhx389982.417Xenopus_tropicalis
ENSG00000140829DHX389985.789ENSXCOG00000011321dhx389981.255Xiphophorus_couchianus
ENSG00000140829DHX389985.789ENSXMAG00000003292dhx389980.637Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome11991638.ICProcess
GO:0000398mRNA splicing, via spliceosome9524131.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding22681889.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0005515protein binding21044950.22365833.25036637.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus9524131.NASComponent
GO:0005654nucleoplasm-TASComponent
GO:0006405RNA export from nucleus-TASProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0016020membrane19946888.HDAComponent
GO:0031124mRNA 3'-end processing-TASProcess
GO:0034459ATP-dependent 3'-5' RNA helicase activity21873635.IBAFunction
GO:0071013catalytic step 2 spliceosome11991638.IDAComponent

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