EuRBPDB

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  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000143702 (Gene tree)
Gene ID
9859
Gene Symbol
CEP170
Alias
KAB|FAM68A|KIAA0470
Full Name
centrosomal protein 170
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
130,979 bases
Position
chr1:243,124,428-243,255,406
Accession
28920
RBP type
non-canonical RBP
Summary
The product of this gene is a component of the centrosome, a non-membraneous organelle that functions as the major microtubule-organizing center in animal cells. During interphase, the encoded protein localizes to the sub-distal appendages of mature centrioles, which are microtubule-based structures thought to help organize centrosomes. During mitosis, the protein associates with spindle microtubules near the centrosomes. The protein interacts with and is phosphorylated by polo-like kinase 1, and functions in maintaining microtubule organization and cell morphology. The human genome contains a putative transcribed pseudogene. Several alternatively spliced transcript variants of this gene have been found, but the full-length nature of some of these variants has not been determined. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000490813CEP170-2161070-ENSP00000430142293 (aa)-E7EWM2
ENST00000451408CEP170-2071244--- (aa)--
ENST00000523581CEP170-225582--- (aa)--
ENST00000522522CEP170-2211180--- (aa)--
ENST00000476661CEP170-214471--- (aa)--
ENST00000461671CEP170-208642-ENSP00000428777119 (aa)-H0YB66
ENST00000469646CEP170-213662--- (aa)--
ENST00000521911CEP170-219571--- (aa)--
ENST00000468697CEP170-212618--- (aa)--
ENST00000366543CEP170-2036727XM_011544339ENSP000003555011460 (aa)XP_011542641Q5SW79
ENST00000466495CEP170-210420--- (aa)--
ENST00000366544CEP170-2046805XM_011544344ENSP000003555021486 (aa)XP_011542646Q5SW79
ENST00000336415CEP170-2015961-ENSP000003381611558 (aa)-H0Y2V6
ENST00000481987CEP170-2153031-ENSP00000427842320 (aa)-E7EMW0
ENST00000492145CEP170-217609-ENSP00000430112103 (aa)-E5RGW7
ENST00000366542CEP170-2026828XM_006711843ENSP000003555001584 (aa)XP_006711906Q5SW79
ENST00000468254CEP170-2112972--- (aa)--
ENST00000464936CEP170-209741-ENSP00000427843175 (aa)-E5RG47
ENST00000522895CEP170-222616-ENSP00000428996173 (aa)-H0YB92
ENST00000518289CEP170-218571--- (aa)--
ENST00000523424CEP170-224593-ENSP00000428183111 (aa)-E5RJT5
ENST00000413359CEP170-205789-ENSP00000394002263 (aa)-H0Y4T4
ENST00000522191CEP170-220561-ENSP00000427944133 (aa)-E5RFU8
ENST00000439296CEP170-206638--- (aa)--
ENST00000522995CEP170-223608-ENSP0000042840088 (aa)-E5RIH6
Gene Model
Click here to download ENSG00000143702's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000143702Bronchopulmonary Dysplasia3E-623897914
ENSG00000143702Education2E-625201988
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000143702rs104369511243199378ALung cancer in ever smokers28604730[1.35-1.91]1.6081543EFO_0006527|EFO_0001071
ENSG00000143702rs46585521243249634TEducational attainment25201988[NR] unit increase0.021EFO_0004784
ENSG00000143702rs557160841243127340ABronchopulmonary dysplasia23897914[NR]1.59Orphanet_70589
ENSG00000143702rs120808861243222734TDiastolic blood pressure x alcohol consumption interaction (2df test)29912962EFO_0006336|EFO_0004329
ENSG00000143702rs109269731243225068TRed cell distribution width28957414[0.014-0.031] unit increase0.0224657EFO_0005192
ENSG00000143702rs21719741243220333?Red cell distribution width30595370EFO_0005192
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000143702's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005515protein binding22190034.28422092.IPIFunction
GO:0005813centrosome21399614.IDAComponent
GO:0005814centriole23213374.23386061.24421332.27623382.IDAComponent
GO:0005819spindle-IEAComponent
GO:0005829cytosol-IDAComponent
GO:0005874microtubule-IEAComponent
GO:0005886plasma membrane-IDAComponent
GO:0120103centriolar subdistal appendage23213374.IDAComponent

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