EuRBPDB

Description

Ensembl ID: ENSG00000143751 (Gene tree)
Gene ID: 163859
Gene Symbol: SDE2
Alias: FLJ35382|C1orf55
Full Name: SDE2 telomere maintenance homolog
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 16,664 bases
Position: chr1:225,982,702-225,999,365
Accession: 26643
RBP type: non-canonical RBP
Summary: (SDE2 Telomere Maintenance Homolog) is a Protein Coding gene. An important paralog of this gene is SF3A3.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000272091	SDE2-201	3975	-	ENSP00000272091	451 (aa)	-	Q6IQ49

Gene Model

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000143751	Platelet Function Tests	1.5732600E-005	-
ENSG00000143751	Aggression	6E-6	27021288
ENSG00000143751	Attention Deficit Disorder with Hyperactivity	6E-6	27021288

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000143751	SDE2	100	66.161	ENSMUSG00000038806	Sde2	100	65.944	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003684	damaged DNA binding	27906959.	IDA	Function
GO:0005515	protein binding	27906959.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	27906959.	IDA	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0016485	protein processing	27906959.	IDA	Process
GO:0016567	protein ubiquitination	27906959.	IDA	Process
GO:0034644	cellular response to UV	27906959.	IDA	Process
GO:0051301	cell division	-	IEA	Process
GO:0071156	regulation of cell cycle arrest	27906959.	IDA	Process