EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000144029 (Gene tree)
Gene ID
64969
Gene Symbol
MRPS5
Alias
MRP-S5|S5mt
Full Name
mitochondrial ribosomal protein S5
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
62,228 bases
Position
chr2:95,087,207-95,149,434
Accession
14498
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S5P family. Pseudogenes corresponding to this gene are found on chromosomes 4q, 5q, and 18q. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000272418Ribosomal_S5_CPF03719.157.1e-1911
ENSP00000272418Ribosomal_S5PF00333.201.9e-1711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000482568MRPS5-207711--- (aa)--
ENST00000475040MRPS5-205713--- (aa)--
ENST00000461916MRPS5-203793--- (aa)--
ENST00000482821MRPS5-2083680--- (aa)--
ENST00000345084MRPS5-2021359-ENSP00000341660251 (aa)-P82675
ENST00000464458MRPS5-204648--- (aa)--
ENST00000475895MRPS5-2061672--- (aa)--
ENST00000272418MRPS5-2011652-ENSP00000272418430 (aa)-P82675
Gene Model
Click here to download ENSG00000144029's gene model file
Pathways
Pathway IDPathway NameSource
hsa03010RibosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000144029Language Tests2.7838000E-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000144029's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000144029MRPS58065.318ENSAPOG00000006057mrps58265.318Acanthochromis_polyacanthus
ENSG00000144029MRPS510083.721ENSAMEG00000009757MRPS510083.721Ailuropoda_melanoleuca
ENSG00000144029MRPS59457.971ENSACIG00000011594mrps59857.971Amphilophus_citrinellus
ENSG00000144029MRPS59359.000ENSAPEG00000000853mrps59759.406Amphiprion_percula
ENSG00000144029MRPS59359.453ENSATEG00000012264mrps59759.453Anabas_testudineus
ENSG00000144029MRPS58668.207ENSAPLG00000002557MRPS59968.207Anas_platyrhynchos
ENSG00000144029MRPS58671.196ENSACAG00000000830MRPS59071.196Anolis_carolinensis
ENSG00000144029MRPS510089.070ENSANAG00000030230MRPS510089.070Aotus_nancymaae
ENSG00000144029MRPS59455.419ENSACLG00000025759mrps59955.419Astatotilapia_calliptera
ENSG00000144029MRPS58366.667ENSAMXG00000033743mrps59266.667Astyanax_mexicanus
ENSG00000144029MRPS510082.093ENSBTAG00000008241MRPS510082.093Bos_taurus
ENSG00000144029MRPS57436.446WBGene00008452mrps-57535.542Caenorhabditis_elegans
ENSG00000144029MRPS59988.811ENSCJAG00000018942MRPS59988.811Callithrix_jacchus
ENSG00000144029MRPS510084.884ENSCAFG00000007040MRPS510084.884Canis_familiaris
ENSG00000144029MRPS510084.884ENSCAFG00020019650MRPS510084.884Canis_lupus_dingo
ENSG00000144029MRPS59982.284ENSCHIG00000020942MRPS59982.284Capra_hircus
ENSG00000144029MRPS510085.814ENSTSYG00000001808MRPS510085.814Carlito_syrichta
ENSG00000144029MRPS59582.195ENSCAPG00000016441MRPS59782.195Cavia_aperea
ENSG00000144029MRPS510082.135ENSCPOG00000004405MRPS510082.135Cavia_porcellus
ENSG00000144029MRPS510089.535ENSCCAG00000026269MRPS510089.535Cebus_capucinus
ENSG00000144029MRPS510089.535ENSCATG00000031215MRPS510089.535Cercocebus_atys
ENSG00000144029MRPS510080.742ENSCLAG00000006224MRPS510080.742Chinchilla_lanigera
ENSG00000144029MRPS59689.806ENSCSAG00000017411MRPS58289.806Chlorocebus_sabaeus
ENSG00000144029MRPS59067.866ENSCPBG00000018258MRPS59968.766Chrysemys_picta_bellii
ENSG00000144029MRPS57341.772ENSCING00000005698-7541.391Ciona_intestinalis
ENSG00000144029MRPS510074.483ENSCANG00000042096-10074.483Colobus_angolensis_palliatus
ENSG00000144029MRPS59589.242ENSCANG00000042646MRPS59989.242Colobus_angolensis_palliatus
ENSG00000144029MRPS510077.262ENSCGRG00001019558Mrps510077.262Cricetulus_griseus_chok1gshd
ENSG00000144029MRPS510077.262ENSCGRG00000006508Mrps510077.262Cricetulus_griseus_crigri
ENSG00000144029MRPS59458.065ENSCSEG00000000495mrps59858.065Cynoglossus_semilaevis
ENSG00000144029MRPS57461.801ENSCVAG00000015403mrps59561.238Cyprinodon_variegatus
ENSG00000144029MRPS59457.568ENSDARG00000062209mrps59857.568Danio_rerio
ENSG00000144029MRPS510072.286ENSDNOG00000007247MRPS510072.286Dasypus_novemcinctus
ENSG00000144029MRPS510082.326ENSDORG00000001493Mrps510082.326Dipodomys_ordii
ENSG00000144029MRPS57342.073FBgn0044510mRpS58042.073Drosophila_melanogaster
ENSG00000144029MRPS510065.116ENSETEG00000010834MRPS510065.116Echinops_telfairi
ENSG00000144029MRPS55754.167ENSEBUG00000013756mrps56358.654Eptatretus_burgeri
ENSG00000144029MRPS510085.151ENSEASG00005005278MRPS510085.151Equus_asinus_asinus
ENSG00000144029MRPS510084.687ENSECAG00000001234MRPS510084.687Equus_caballus
ENSG00000144029MRPS510067.209ENSEEUG00000011502MRPS510067.209Erinaceus_europaeus
ENSG00000144029MRPS58666.129ENSELUG00000003664mrps59266.129Esox_lucius
ENSG00000144029MRPS510083.256ENSFCAG00000009358MRPS58683.256Felis_catus
ENSG00000144029MRPS58668.108ENSFALG00000002327MRPS59864.778Ficedula_albicollis
ENSG00000144029MRPS510081.439ENSFDAG00000004115MRPS510081.439Fukomys_damarensis
ENSG00000144029MRPS57863.501ENSFHEG00000007507mrps59263.501Fundulus_heteroclitus
ENSG00000144029MRPS55363.910ENSGMOG00000008049mrps59559.184Gadus_morhua
ENSG00000144029MRPS59463.547ENSGALG00000008550MRPS59763.861Gallus_gallus
ENSG00000144029MRPS58066.763ENSGAFG00000012707mrps58566.763Gambusia_affinis
ENSG00000144029MRPS55768.056ENSGACG00000000216mrps58267.901Gasterosteus_aculeatus
ENSG00000144029MRPS57271.290ENSGAGG00000005665MRPS59071.290Gopherus_agassizii
ENSG00000144029MRPS510098.140ENSGGOG00000001750MRPS510098.140Gorilla_gorilla
ENSG00000144029MRPS59084.000ENSGGOG00000022731-10073.953Gorilla_gorilla
ENSG00000144029MRPS58455.586ENSHBUG00000006687mrps59455.586Haplochromis_burtoni
ENSG00000144029MRPS510082.599ENSHGLG00000016278MRPS510082.599Heterocephalus_glaber_female
ENSG00000144029MRPS510082.599ENSHGLG00100013743MRPS510082.599Heterocephalus_glaber_male
ENSG00000144029MRPS56465.091ENSHCOG00000014200mrps58165.091Hippocampus_comes
ENSG00000144029MRPS57968.328ENSIPUG00000018395mrps57368.328Ictalurus_punctatus
ENSG00000144029MRPS59880.142ENSJJAG00000022513Mrps510081.509Jaculus_jaculus
ENSG00000144029MRPS59458.313ENSKMAG00000016581mrps59858.313Kryptolebias_marmoratus
ENSG00000144029MRPS58063.584ENSLBEG00000007499mrps57663.584Labrus_bergylta
ENSG00000144029MRPS56762.500ENSLOCG00000015618mrps59360.821Lepisosteus_oculatus
ENSG00000144029MRPS510073.488ENSMFAG00000002850-10073.488Macaca_fascicularis
ENSG00000144029MRPS510088.837ENSMFAG00000043526MRPS510088.837Macaca_fascicularis
ENSG00000144029MRPS58189.904ENSMMUG00000029361-9389.904Macaca_mulatta
ENSG00000144029MRPS510073.023ENSMMUG00000003033-10073.023Macaca_mulatta
ENSG00000144029MRPS510088.837ENSMNEG00000041571-10088.837Macaca_nemestrina
ENSG00000144029MRPS510073.488ENSMNEG00000029316-10073.488Macaca_nemestrina
ENSG00000144029MRPS510084.419ENSMNEG00000028934-10084.419Macaca_nemestrina
ENSG00000144029MRPS59988.443ENSMLEG00000032039MRPS58788.443Mandrillus_leucophaeus
ENSG00000144029MRPS510071.860ENSMLEG00000006829-10071.860Mandrillus_leucophaeus
ENSG00000144029MRPS58068.497ENSMAMG00000022074mrps58768.497Mastacembelus_armatus
ENSG00000144029MRPS59455.419ENSMZEG00005020014mrps59955.419Maylandia_zebra
ENSG00000144029MRPS58267.422ENSMGAG00000007201MRPS59968.750Meleagris_gallopavo
ENSG00000144029MRPS510077.726ENSMAUG00000002765Mrps510077.726Mesocricetus_auratus
ENSG00000144029MRPS59675.971ENSMICG00000007318-9977.225Microcebus_murinus
ENSG00000144029MRPS510075.581ENSMICG00000046753-10075.814Microcebus_murinus
ENSG00000144029MRPS510079.350ENSMOCG00000001710Mrps510079.350Microtus_ochrogaster
ENSG00000144029MRPS58550.402ENSMMOG00000007366mrps58952.861Mola_mola
ENSG00000144029MRPS59073.902ENSMODG00000007235MRPS59973.902Monodelphis_domestica
ENSG00000144029MRPS58058.960ENSMALG00000020388mrps58558.960Monopterus_albus
ENSG00000144029MRPS510079.861MGP_CAROLIEiJ_G0024262Mrps510079.861Mus_caroli
ENSG00000144029MRPS510079.861ENSMUSG00000027374Mrps510079.861Mus_musculus
ENSG00000144029MRPS510080.093MGP_SPRETEiJ_G0025182Mrps510080.093Mus_spretus
ENSG00000144029MRPS510083.063ENSMPUG00000009170MRPS510083.063Mustela_putorius_furo
ENSG00000144029MRPS510083.759ENSMLUG00000003183MRPS510083.759Myotis_lucifugus
ENSG00000144029MRPS510077.030ENSNGAG00000013050Mrps510077.030Nannospalax_galili
ENSG00000144029MRPS55066.047ENSNBRG00000011584mrps58666.047Neolamprologus_brichardi
ENSG00000144029MRPS59995.338ENSNLEG00000000002MRPS59995.338Nomascus_leucogenys
ENSG00000144029MRPS59481.773ENSOPRG00000005079MRPS59981.773Ochotona_princeps
ENSG00000144029MRPS510079.070ENSODEG00000006937MRPS510079.070Octodon_degus
ENSG00000144029MRPS59461.084ENSONIG00000001150mrps59861.084Oreochromis_niloticus
ENSG00000144029MRPS510083.488ENSOCUG00000003547MRPS510083.488Oryctolagus_cuniculus
ENSG00000144029MRPS58167.529ENSORLG00020014512mrps59959.251Oryzias_latipes_hni
ENSG00000144029MRPS59261.905ENSORLG00015019956mrps59661.905Oryzias_latipes_hsok
ENSG00000144029MRPS59261.153ENSOMEG00000013610mrps59061.153Oryzias_melastigma
ENSG00000144029MRPS510083.603ENSOGAG00000031363MRPS510083.603Otolemur_garnettii
ENSG00000144029MRPS59882.270ENSOARG00000014191MRPS59982.270Ovis_aries
ENSG00000144029MRPS510072.791ENSPPAG00000015080-10072.791Pan_paniscus
ENSG00000144029MRPS510099.767ENSPPAG00000039966MRPS510099.767Pan_paniscus
ENSG00000144029MRPS510083.023ENSPPRG00000004724MRPS510083.023Panthera_pardus
ENSG00000144029MRPS510083.023ENSPTIG00000011824MRPS510083.023Panthera_tigris_altaica
ENSG00000144029MRPS510073.488ENSPTRG00000048267-10073.488Pan_troglodytes
ENSG00000144029MRPS510099.767ENSPTRG00000012209MRPS510099.767Pan_troglodytes
ENSG00000144029MRPS510089.767ENSPANG00000022839MRPS510089.767Papio_anubis
ENSG00000144029MRPS510074.419ENSPANG00000032455-10074.419Papio_anubis
ENSG00000144029MRPS58762.667ENSPKIG00000022123mrps59362.667Paramormyrops_kingsleyae
ENSG00000144029MRPS58571.038ENSPSIG00000004820MRPS59971.038Pelodiscus_sinensis
ENSG00000144029MRPS58559.673ENSPMGG00000003674mrps59659.836Periophthalmus_magnuspinnatus
ENSG00000144029MRPS510077.958ENSPEMG00000012667Mrps510077.958Peromyscus_maniculatus_bairdii
ENSG00000144029MRPS56560.791ENSPMAG00000007465mrps59760.791Petromyzon_marinus
ENSG00000144029MRPS59969.087ENSPCIG00000003207-9969.249Phascolarctos_cinereus
ENSG00000144029MRPS58067.052ENSPFOG00000006753mrps58567.052Poecilia_formosa
ENSG00000144029MRPS58067.052ENSPLAG00000015964mrps58567.052Poecilia_latipinna
ENSG00000144029MRPS58067.341ENSPMEG00000023362mrps59860.848Poecilia_mexicana
ENSG00000144029MRPS58067.630ENSPREG00000001722mrps58567.630Poecilia_reticulata
ENSG00000144029MRPS510095.814ENSPPYG00000012051MRPS510095.814Pongo_abelii
ENSG00000144029MRPS510082.791ENSPCOG00000026442MRPS510082.791Propithecus_coquereli
ENSG00000144029MRPS59980.420ENSPVAG00000006094MRPS59980.420Pteropus_vampyrus
ENSG00000144029MRPS59461.576ENSPNYG00000009861mrps59861.576Pundamilia_nyererei
ENSG00000144029MRPS58069.942ENSPNAG00000011574mrps59264.691Pygocentrus_nattereri
ENSG00000144029MRPS510080.787ENSRNOG00000015192Mrps510080.787Rattus_norvegicus
ENSG00000144029MRPS58192.661ENSRBIG00000039881MRPS59292.661Rhinopithecus_bieti
ENSG00000144029MRPS510069.655ENSRROG00000036340-9169.655Rhinopithecus_roxellana
ENSG00000144029MRPS510088.837ENSRROG00000037350MRPS510088.837Rhinopithecus_roxellana
ENSG00000144029MRPS59989.977ENSSBOG00000021540MRPS59989.977Saimiri_boliviensis_boliviensis
ENSG00000144029MRPS510072.093ENSSHAG00000012969MRPS59972.093Sarcophilus_harrisii
ENSG00000144029MRPS58268.091ENSSFOG00015006898mrps58868.091Scleropages_formosus
ENSG00000144029MRPS59359.601ENSSMAG00000019624mrps59759.601Scophthalmus_maximus
ENSG00000144029MRPS59458.561ENSSDUG00000019792mrps59858.561Seriola_dumerili
ENSG00000144029MRPS59257.576ENSSLDG00000016726mrps59657.576Seriola_lalandi_dorsalis
ENSG00000144029MRPS57775.439ENSSARG00000004486-8175.439Sorex_araneus
ENSG00000144029MRPS57863.205ENSSPUG00000018881MRPS59763.205Sphenodon_punctatus
ENSG00000144029MRPS58065.318ENSSPAG00000021042mrps58565.318Stegastes_partitus
ENSG00000144029MRPS510082.791ENSSSCG00000008113MRPS510082.791Sus_scrofa
ENSG00000144029MRPS58668.464ENSTGUG00000002166MRPS59968.464Taeniopygia_guttata
ENSG00000144029MRPS58878.158ENSTBEG00000013607MRPS59978.158Tupaia_belangeri
ENSG00000144029MRPS59484.483ENSTTRG00000004963MRPS510084.483Tursiops_truncatus
ENSG00000144029MRPS59079.111ENSUAMG00000011086MRPS59279.330Ursus_americanus
ENSG00000144029MRPS510083.488ENSUMAG00000012079MRPS510083.488Ursus_maritimus
ENSG00000144029MRPS59584.634ENSVPAG00000003674MRPS510084.634Vicugna_pacos
ENSG00000144029MRPS510085.116ENSVVUG00000027421MRPS510085.116Vulpes_vulpes
ENSG00000144029MRPS58369.081ENSXETG00000022440mrps59969.081Xenopus_tropicalis
ENSG00000144029MRPS58162.931ENSXCOG00000000561mrps59062.931Xiphophorus_couchianus
ENSG00000144029MRPS58067.052ENSXMAG00000028833mrps58567.052Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003735structural constituent of ribosome21873635.IBAFunction
GO:0005739mitochondrion-IDAComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005763mitochondrial small ribosomal subunit21873635.IBAComponent
GO:0005763mitochondrial small ribosomal subunit25838379.IDAComponent
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess

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