EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000145833 (Gene tree)
Gene ID
9879
Gene Symbol
DDX46
Alias
KIAA0801|FLJ25329|PRPF5|Prp5
Full Name
DEAD-box helicase 46
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
96,400 bases
Position
chr5:134,758,734-134,855,133
Accession
18681
RBP type
canonical RBP
Summary
This gene encodes a member of the DEAD box protein family. DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene is a component of the 17S U2 snRNP complex; it plays an important role in pre-mRNA splicing. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2014]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000346236DEADPF00270.292.6e-5011
ENSP00000416534DEADPF00270.292.6e-5011
ENSP00000487025DEADPF00270.291.7e-3311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
14610285ATP requirement for Prp5p function is determined by Cus2p and the structure of U2 small nuclear RNA.Proc Natl Acad Sci U S A2003 Nov 25Perriman R-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000505592DDX46-204555--- (aa)--
ENST00000628477DDX46-2121584XM_011543758ENSP00000487025471 (aa)XP_011542060D6RJA6
ENST00000506332DDX46-2051589--- (aa)--
ENST00000452510DDX46-2025689-ENSP000004165341032 (aa)-A0A0C4DG89
ENST00000507392DDX46-2073565-ENSP00000427290471 (aa)-D6RJA6
ENST00000507053DDX46-206530-ENSP0000042507370 (aa)-H0Y9U3
ENST00000509255DDX46-209398--- (aa)--
ENST00000513987DDX46-211543--- (aa)--
ENST00000513592DDX46-210571-ENSP0000042676729 (aa)-H0YAD5
ENST00000503946DDX46-2034078--- (aa)--
ENST00000509178DDX46-208766--- (aa)--
ENST00000354283DDX46-2013821-ENSP000003462361031 (aa)-Q7L014
Gene Model
Click here to download ENSG00000145833's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000145833's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000145833DDX469997.101ENSAPOG00000000193ddx469085.506Acanthochromis_polyacanthus
ENSG00000145833DDX4610099.709ENSAMEG00000017873DDX4610099.709Ailuropoda_melanoleuca
ENSG00000145833DDX469997.101ENSACIG00000013235ddx469084.333Amphilophus_citrinellus
ENSG00000145833DDX469997.101ENSAOCG00000007758ddx469478.206Amphiprion_ocellaris
ENSG00000145833DDX469997.101ENSAPEG00000022648ddx469478.311Amphiprion_percula
ENSG00000145833DDX469997.101ENSATEG00000012998ddx469181.779Anabas_testudineus
ENSG00000145833DDX4699100.000ENSAPLG00000013208DDX468992.441Anas_platyrhynchos
ENSG00000145833DDX4699100.000ENSACAG00000001437DDX4610092.281Anolis_carolinensis
ENSG00000145833DDX46100100.000ENSANAG00000032116DDX46100100.000Aotus_nancymaae
ENSG00000145833DDX469997.101ENSACLG00000014804ddx469285.520Astatotilapia_calliptera
ENSG00000145833DDX469998.551ENSAMXG00000008413ddx468981.878Astyanax_mexicanus
ENSG00000145833DDX4610099.709ENSBTAG00000021520DDX4610099.709Bos_taurus
ENSG00000145833DDX4610099.903ENSCJAG00000005697DDX4610099.903Callithrix_jacchus
ENSG00000145833DDX4610099.806ENSCAFG00000001048DDX4610099.806Canis_familiaris
ENSG00000145833DDX4610099.806ENSCAFG00020006070DDX4610099.806Canis_lupus_dingo
ENSG00000145833DDX4610099.806ENSCHIG00000026009DDX4610099.806Capra_hircus
ENSG00000145833DDX46100100.000ENSTSYG00000003177DDX46100100.000Carlito_syrichta
ENSG00000145833DDX469993.590ENSCAPG00000010776-9693.590Cavia_aperea
ENSG00000145833DDX4610099.709ENSCPOG00000011362DDX4610099.709Cavia_porcellus
ENSG00000145833DDX4610099.903ENSCCAG00000026721DDX4610099.903Cebus_capucinus
ENSG00000145833DDX46100100.000ENSCATG00000040891DDX46100100.000Cercocebus_atys
ENSG00000145833DDX4610099.903ENSCLAG00000014581DDX4610099.903Chinchilla_lanigera
ENSG00000145833DDX469963.768ENSCHOG00000005683DDX468078.091Choloepus_hoffmanni
ENSG00000145833DDX4699100.000ENSCPBG00000008261DDX469693.303Chrysemys_picta_bellii
ENSG00000145833DDX469975.000ENSCING00000006813-10073.307Ciona_intestinalis
ENSG00000145833DDX469973.913ENSCSAVG00000002353-9777.083Ciona_savignyi
ENSG00000145833DDX466099.692ENSCANG00000014766DDX4610099.692Colobus_angolensis_palliatus
ENSG00000145833DDX4699100.000ENSCGRG00001024140Ddx469998.529Cricetulus_griseus_chok1gshd
ENSG00000145833DDX4699100.000ENSCGRG00000005152Ddx4610099.025Cricetulus_griseus_crigri
ENSG00000145833DDX469997.101ENSCSEG00000016886ddx469481.393Cynoglossus_semilaevis
ENSG00000145833DDX469995.652ENSCVAG00000022900ddx469383.778Cyprinodon_variegatus
ENSG00000145833DDX469998.551ENSDARG00000099458ddx469282.590Danio_rerio
ENSG00000145833DDX4610099.225ENSDNOG00000011448DDX4610099.225Dasypus_novemcinctus
ENSG00000145833DDX4699100.000ENSDORG00000005447Ddx468991.135Dipodomys_ordii
ENSG00000145833DDX4699100.000ENSETEG00000018455DDX467988.761Echinops_telfairi
ENSG00000145833DDX465773.063ENSEBUG00000013320ddx466573.063Eptatretus_burgeri
ENSG00000145833DDX4610099.788ENSEASG00005020329DDX4610099.788Equus_asinus_asinus
ENSG00000145833DDX4610099.806ENSECAG00000018217DDX4610099.806Equus_caballus
ENSG00000145833DDX4660100.000ENSEEUG00000003602-6775.217Erinaceus_europaeus
ENSG00000145833DDX469997.101ENSELUG00000000817ddx469383.721Esox_lucius
ENSG00000145833DDX4610099.612ENSFCAG00000026229DDX4610099.612Felis_catus
ENSG00000145833DDX4699100.000ENSFALG00000007947DDX4610094.205Ficedula_albicollis
ENSG00000145833DDX4610099.709ENSFDAG00000021262DDX4610099.709Fukomys_damarensis
ENSG00000145833DDX469995.652ENSFHEG00000020055ddx469382.743Fundulus_heteroclitus
ENSG00000145833DDX469997.101ENSGMOG00000007990ddx469182.811Gadus_morhua
ENSG00000145833DDX4699100.000ENSGALG00000006404DDX469092.324Gallus_gallus
ENSG00000145833DDX469995.652ENSGAFG00000007153ddx469178.049Gambusia_affinis
ENSG00000145833DDX469995.652ENSGACG00000000166ddx469182.397Gasterosteus_aculeatus
ENSG00000145833DDX4699100.000ENSGAGG00000014910DDX469092.605Gopherus_agassizii
ENSG00000145833DDX46100100.000ENSGGOG00000013843DDX46100100.000Gorilla_gorilla
ENSG00000145833DDX469997.101ENSHBUG00000021074ddx469285.714Haplochromis_burtoni
ENSG00000145833DDX4610099.612ENSHGLG00000010455DDX4610099.612Heterocephalus_glaber_female
ENSG00000145833DDX4610099.612ENSHGLG00100016515DDX4610099.612Heterocephalus_glaber_male
ENSG00000145833DDX467977.089ENSHCOG00000010877ddx467475.733Hippocampus_comes
ENSG00000145833DDX469998.551ENSIPUG00000002564ddx469082.791Ictalurus_punctatus
ENSG00000145833DDX466799.363ENSSTOG00000025564DDX4675100.000Ictidomys_tridecemlineatus
ENSG00000145833DDX4610099.224ENSJJAG00000013906Ddx4610099.224Jaculus_jaculus
ENSG00000145833DDX469995.652ENSKMAG00000019510ddx469179.569Kryptolebias_marmoratus
ENSG00000145833DDX469997.101ENSLBEG00000027425ddx469481.120Labrus_bergylta
ENSG00000145833DDX4699100.000ENSLACG00000007965DDX469090.456Latimeria_chalumnae
ENSG00000145833DDX469998.551ENSLOCG00000010169ddx469086.120Lepisosteus_oculatus
ENSG00000145833DDX4610099.419ENSLAFG00000010465DDX4610099.419Loxodonta_africana
ENSG00000145833DDX46100100.000ENSMFAG00000044528DDX46100100.000Macaca_fascicularis
ENSG00000145833DDX46100100.000ENSMMUG00000012463DDX46100100.000Macaca_mulatta
ENSG00000145833DDX46100100.000ENSMNEG00000029903DDX46100100.000Macaca_nemestrina
ENSG00000145833DDX46100100.000ENSMLEG00000033516DDX46100100.000Mandrillus_leucophaeus
ENSG00000145833DDX469997.101ENSMAMG00000021755ddx469183.965Mastacembelus_armatus
ENSG00000145833DDX469997.101ENSMZEG00005008989ddx469285.520Maylandia_zebra
ENSG00000145833DDX4699100.000ENSMGAG00000008226DDX469093.615Meleagris_gallopavo
ENSG00000145833DDX4699100.000ENSMAUG00000003267Ddx4610098.826Mesocricetus_auratus
ENSG00000145833DDX4699100.000ENSMICG00000028626DDX4610094.956Microcebus_murinus
ENSG00000145833DDX4699100.000ENSMOCG00000012141Ddx469991.240Microtus_ochrogaster
ENSG00000145833DDX469995.652ENSMMOG00000013470ddx469185.504Mola_mola
ENSG00000145833DDX4699100.000ENSMODG00000014331DDX469096.544Monodelphis_domestica
ENSG00000145833DDX469997.101ENSMALG00000016796ddx469283.554Monopterus_albus
ENSG00000145833DDX4699100.000MGP_CAROLIEiJ_G0018573Ddx4610098.837Mus_caroli
ENSG00000145833DDX4699100.000ENSMUSG00000021500Ddx4610098.934Mus_musculus
ENSG00000145833DDX4699100.000MGP_PahariEiJ_G0019638Ddx4610098.739Mus_pahari
ENSG00000145833DDX4699100.000MGP_SPRETEiJ_G0019453Ddx4610098.934Mus_spretus
ENSG00000145833DDX4610099.709ENSMPUG00000010045DDX4610099.709Mustela_putorius_furo
ENSG00000145833DDX4610099.516ENSMLUG00000012607DDX4610099.516Myotis_lucifugus
ENSG00000145833DDX4699100.000ENSNGAG00000020157Ddx469799.378Nannospalax_galili
ENSG00000145833DDX469997.101ENSNBRG00000008155ddx469285.601Neolamprologus_brichardi
ENSG00000145833DDX4610099.903ENSNLEG00000008167DDX4610099.903Nomascus_leucogenys
ENSG00000145833DDX4699100.000ENSMEUG00000014890-6098.630Notamacropus_eugenii
ENSG00000145833DDX4699100.000ENSOPRG00000006646DDX4610098.157Ochotona_princeps
ENSG00000145833DDX4699100.000ENSODEG00000010023DDX4610099.708Octodon_degus
ENSG00000145833DDX469997.101ENSONIG00000017282ddx469182.885Oreochromis_niloticus
ENSG00000145833DDX4699100.000ENSOANG00000001842DDX469693.838Ornithorhynchus_anatinus
ENSG00000145833DDX4699100.000ENSOCUG00000012206DDX4610098.935Oryctolagus_cuniculus
ENSG00000145833DDX469997.101ENSORLG00000000903ddx469880.957Oryzias_latipes
ENSG00000145833DDX469997.101ENSORLG00020022093ddx469880.957Oryzias_latipes_hni
ENSG00000145833DDX469997.101ENSORLG00015007282ddx469880.957Oryzias_latipes_hsok
ENSG00000145833DDX469997.101ENSOMEG00000003338ddx469483.241Oryzias_melastigma
ENSG00000145833DDX4699100.000ENSOGAG00000034921-10097.481Otolemur_garnettii
ENSG00000145833DDX4699100.000ENSOGAG00000011690-9990.185Otolemur_garnettii
ENSG00000145833DDX4610099.710ENSOARG00000014348DDX4610099.710Ovis_aries
ENSG00000145833DDX46100100.000ENSPPAG00000037804DDX46100100.000Pan_paniscus
ENSG00000145833DDX4610099.612ENSPPRG00000010743DDX4610099.612Panthera_pardus
ENSG00000145833DDX4610099.321ENSPTIG00000012382DDX469999.321Panthera_tigris_altaica
ENSG00000145833DDX46100100.000ENSPTRG00000017248DDX46100100.000Pan_troglodytes
ENSG00000145833DDX4610099.363ENSPANG00000025084DDX469999.363Papio_anubis
ENSG00000145833DDX469998.551ENSPKIG00000010351ddx469085.111Paramormyrops_kingsleyae
ENSG00000145833DDX4699100.000ENSPSIG00000004522DDX469093.118Pelodiscus_sinensis
ENSG00000145833DDX467881.301ENSPMGG00000019800ddx468381.694Periophthalmus_magnuspinnatus
ENSG00000145833DDX4699100.000ENSPEMG00000013593Ddx4610098.934Peromyscus_maniculatus_bairdii
ENSG00000145833DDX469984.058ENSPMAG00000007922ddx468675.444Petromyzon_marinus
ENSG00000145833DDX4699100.000ENSPCIG00000009215DDX4610097.709Phascolarctos_cinereus
ENSG00000145833DDX469995.652ENSPFOG00000004966ddx469178.732Poecilia_formosa
ENSG00000145833DDX469995.652ENSPLAG00000023562ddx469083.278Poecilia_latipinna
ENSG00000145833DDX469995.652ENSPMEG00000013401ddx469580.717Poecilia_mexicana
ENSG00000145833DDX469995.652ENSPREG00000005444ddx468781.517Poecilia_reticulata
ENSG00000145833DDX4699100.000ENSPPYG00000015792DDX466996.047Pongo_abelii
ENSG00000145833DDX4699100.000ENSPCAG00000012364DDX468698.658Procavia_capensis
ENSG00000145833DDX4677100.000ENSPCOG00000018969DDX468998.039Propithecus_coquereli
ENSG00000145833DDX4610098.351ENSPVAG00000015655DDX4610098.351Pteropus_vampyrus
ENSG00000145833DDX469981.429ENSPNYG00000012327ddx469284.424Pundamilia_nyererei
ENSG00000145833DDX467496.154ENSPNAG00000010806ddx468684.910Pygocentrus_nattereri
ENSG00000145833DDX4699100.000ENSRNOG00000021637Ddx4610098.740Rattus_norvegicus
ENSG00000145833DDX4699100.000ENSRBIG00000041150DDX466995.988Rhinopithecus_bieti
ENSG00000145833DDX46100100.000ENSRROG00000029467DDX46100100.000Rhinopithecus_roxellana
ENSG00000145833DDX4699100.000ENSSBOG00000027666DDX469974.491Saimiri_boliviensis_boliviensis
ENSG00000145833DDX4699100.000ENSSHAG00000014408DDX468096.544Sarcophilus_harrisii
ENSG00000145833DDX469997.101ENSSFOG00015020093ddx469384.372Scleropages_formosus
ENSG00000145833DDX469997.101ENSSMAG00000007229ddx468983.574Scophthalmus_maximus
ENSG00000145833DDX469997.101ENSSDUG00000020991ddx469285.601Seriola_dumerili
ENSG00000145833DDX469997.101ENSSLDG00000016854ddx469285.601Seriola_lalandi_dorsalis
ENSG00000145833DDX4699100.000ENSSARG00000011073DDX4610092.195Sorex_araneus
ENSG00000145833DDX469985.507ENSSPUG00000008985DDX4610093.203Sphenodon_punctatus
ENSG00000145833DDX469997.101ENSSPAG00000017946ddx469580.083Stegastes_partitus
ENSG00000145833DDX4610099.612ENSSSCG00000026644DDX4610099.612Sus_scrofa
ENSG00000145833DDX4699100.000ENSTGUG00000001260-9093.871Taeniopygia_guttata
ENSG00000145833DDX469995.652ENSTRUG00000008878ddx469178.848Takifugu_rubripes
ENSG00000145833DDX469995.652ENSTNIG00000016100ddx468785.281Tetraodon_nigroviridis
ENSG00000145833DDX4699100.000ENSTBEG00000002799DDX4681100.000Tupaia_belangeri
ENSG00000145833DDX4699100.000ENSTTRG00000016869DDX4610092.823Tursiops_truncatus
ENSG00000145833DDX4610099.788ENSUAMG00000017616-10099.788Ursus_americanus
ENSG00000145833DDX4610099.788ENSUMAG00000017446DDX4610099.788Ursus_maritimus
ENSG00000145833DDX4699100.000ENSVPAG00000001591DDX4610096.896Vicugna_pacos
ENSG00000145833DDX4610099.806ENSVVUG00000017549DDX4610099.806Vulpes_vulpes
ENSG00000145833DDX469997.101ENSXETG00000010405ddx469087.513Xenopus_tropicalis
ENSG00000145833DDX469995.652ENSXCOG00000004162ddx469579.698Xiphophorus_couchianus
ENSG00000145833DDX469995.652ENSXMAG00000008312ddx469584.035Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0001650fibrillar center-IDAComponent
GO:0003723RNA binding22681889.HDAFunction
GO:0004386helicase activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus16791210.HDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0015030Cajal body-IEAComponent
GO:0016020membrane-IEAComponent
GO:0016607nuclear speck-IDAComponent

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