EuRBPDB

Description

Ensembl ID: ENSG00000146463 (Gene tree)
Gene ID: 9202
Gene Symbol: ZMYM4
Alias: KIAA0425|ZNF198L3|MYM|ZNF262
Full Name: zinc finger MYM-type containing 4
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 153,345 bases
Position: chr1:35,268,714-35,422,058
Accession: 13055
RBP type: non-canonical RBP
Summary: (Zinc Finger MYM-Type Containing 4) is a Protein Coding gene. An important paralog of this gene is ZMYM6.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000492456	ZMYM4-206	492	-	-	- (aa)	-	-
ENST00000314607	ZMYM4-201	6994	XM_005271328	ENSP00000322915	1548 (aa)	XP_005271385	Q5VZL5
ENST00000470175	ZMYM4-204	427	-	-	- (aa)	-	-
ENST00000482131	ZMYM4-205	640	-	-	- (aa)	-	-
ENST00000457946	ZMYM4-203	6003	XM_005271331	ENSP00000400506	1207 (aa)	XP_005271388	H7C1I7
ENST00000441447	ZMYM4-202	466	-	ENSP00000397524	98 (aa)	-	A0A0A0MSN3

Gene Model

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000146463	Glomerular Filtration Rate	5.42517256108323E-8	17903292
ENSG00000146463	Glomerular Filtration Rate	9.88835025843843E-10	17903292
ENSG00000146463	Sleep	8E-8	27126917

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000146463	rs12069385	1	35314387	T	Night sleep phenotypes	27126917	[0.56-1.21] unit decrease	0.8877	EFO_0005271
ENSG00000146463	rs559986	1	35375657	?	Waist-hip ratio	30595370			EFO_0004343

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000146463	ZMYM4	99	96.310	ENSMUSG00000042446	Zmym4	100	94.197	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0003677	DNA binding	10486218.	TAS	Function
GO:0005515	protein binding	25416956.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0007010	cytoskeleton organization	21834987.	IMP	Process
GO:0007275	multicellular organism development	10486218.	TAS	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0022604	regulation of cell morphogenesis	21873635.	IBA	Process
GO:0022604	regulation of cell morphogenesis	21834987.	IMP	Process