EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Phenotypes

GWAS

PPI

Gene Ontology

Description

Ensembl ID: ENSG00000146540 (Gene tree)
Gene ID: 84310
Gene Symbol: C7orf50
Alias: MGC11257|YCR016W
Full Name: chromosome 7 open reading frame 50
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 159,778 bases
Position: chr7:978,498-1,138,275
Accession: 22421
RBP type: non-canonical RBP
Summary: (Chromosome 7 Open Reading Frame 50) is a Protein Coding gene.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000397100	C7orf50-203	1264	-	ENSP00000380288	194 (aa)	-	Q9BRJ6
ENST00000465681	C7orf50-206	2621	NR_134538	-	- (aa)	-	-
ENST00000397098	C7orf50-202	2131	XM_017012721	ENSP00000380286	194 (aa)	XP_016868210	Q9BRJ6
ENST00000444428	C7orf50-205	507	-	ENSP00000396542	162 (aa)	-	H7C0T1
ENST00000488073	C7orf50-207	853	-	-	- (aa)	-	-
ENST00000412051	C7orf50-204	1147	XM_011515580	ENSP00000407380	179 (aa)	XP_016868208	H7C2R9
ENST00000491163	C7orf50-208	621	XM_011515581	ENSP00000420130	192 (aa)	XP_011513883	C9JQV0
ENST00000357429	C7orf50-201	1294	-	ENSP00000350011	194 (aa)	-	Q9BRJ6

Gene Model

Click here to download ENSG00000146540's gene model file

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000146540	Platelet Function Tests	1.9899600E-005	-
ENSG00000146540	Platelet Function Tests	1.2310300E-005	-
ENSG00000146540	Platelet Function Tests	9.2870123E-006	-
ENSG00000146540	Platelet Function Tests	9.0850908E-006	-
ENSG00000146540	Longevity	1E-6	20834067
ENSG00000146540	Cholesterol	3E-10	24097068
ENSG00000146540	C-Reactive Protein	3E-9	27286809
ENSG00000146540	Cholesterol	3E-9	27286809
ENSG00000146540	Endometriosis	3E-6	27506219

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000146540	rs6951245	7	1018557	A	C-reactive protein levels or total cholesterol levels (pleiotropy)	27286809			EFO_0004574\|EFO_0004458
ENSG00000146540	rs10256972	7	999367	?	Endometriosis	27506219	[1.162-1.433]	1.29	EFO_0001065
ENSG00000146540	rs10256972	7	999367	?	Longevity	20834067			EFO_0004300
ENSG00000146540	rs1104888	7	1066376	?	Mean corpuscular hemoglobin	30595370			EFO_0004527

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000146540's network

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	22658674.	HDA	Function
GO:0005515	protein binding	25416956.	IPI	Function