EuRBPDB

Description

Ensembl ID: ENSG00000147130 (Gene tree)
Gene ID: 9203
Gene Symbol: ZMYM3
Alias: ZNF198L2|DXS6673E|KIAA0385|MYM|ZNF261
Full Name: zinc finger MYM-type containing 3
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 15,638 bases
Position: chrX:71,239,624-71,255,261
Accession: 13054
RBP type: non-canonical RBP
Summary: This gene is located on the X chromosome and is subject to X inactivation. It is highly conserved in vertebrates and most abundantly expressed in the brain. The encoded protein is a component of histone deacetylase-containing multiprotein complexes that function through modifying chromatin structure to keep genes silent. A chromosomal translocation (X;13) involving this gene is associated with X-linked cognitive disability. Several alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jan 2010]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000373981	ZMYM3-203	1841	-	ENSP00000363093	495 (aa)	-	Q14202
ENST00000373982	ZMYM3-204	1867	-	ENSP00000363094	497 (aa)	-	A6NL54
ENST00000489332	ZMYM3-209	5723	-	-	- (aa)	-	-
ENST00000373984	ZMYM3-205	5253	-	ENSP00000363096	1280 (aa)	-	A6NHN7
ENST00000314425	ZMYM3-201	5536	XM_005262309	ENSP00000322845	1370 (aa)	XP_005262366	Q14202
ENST00000373988	ZMYM3-206	6021	-	ENSP00000363100	1372 (aa)	-	A6NHB5
ENST00000470832	ZMYM3-208	533	-	-	- (aa)	-	-
ENST00000373998	ZMYM3-207	6067	XM_005262310	ENSP00000363110	1358 (aa)	XP_005262367	Q14202
ENST00000373978	ZMYM3-202	1511	-	ENSP00000363090	349 (aa)	-	A6NC58

Gene Model

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0003677	DNA binding	10486218.	TAS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	IDA	Component
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0007010	cytoskeleton organization	21834987.	IMP	Process
GO:0007275	multicellular organism development	10486218.	TAS	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0022604	regulation of cell morphogenesis	21873635.	IBA	Process
GO:0022604	regulation of cell morphogenesis	21834987.	IMP	Process