EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000148843 (Gene tree)
Gene ID
22984
Gene Symbol
PDCD11
Alias
KIAA0185|ALG-4|RRP5|NFBP
Full Name
programmed cell death 11
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
49,672 bases
Position
chr10:103,396,624-103,446,295
Accession
13408
RBP type
canonical RBP
Summary
PDCD11 is a NF-kappa-B (NFKB1; 164011)-binding protein that colocalizes with U3 RNA (MIM 180710) in the nucleolus and is required for rRNA maturation and generation of 18S rRNA (Sweet et al., 2003 [PubMed 14624448]; Sweet et al., 2008 [PubMed 17654514]).[supplied by OMIM, Oct 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000358812SufPF05843.146.4e-1111
ENSP00000498205SufPF05843.146.4e-1111
ENSP00000358812S1PF00575.237.7e-7114
ENSP00000358812S1PF00575.237.7e-7124
ENSP00000358812S1PF00575.237.7e-7134
ENSP00000358812S1PF00575.237.7e-7144
ENSP00000498205S1PF00575.237.7e-7114
ENSP00000498205S1PF00575.237.7e-7124
ENSP00000498205S1PF00575.237.7e-7134
ENSP00000498205S1PF00575.237.7e-7144
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
19332556A novel small-subunit processome assembly intermediate that contains the U3 snoRNP, nucleolin, RRP5, and DBP4.Mol Cell Biol2009 JunTurner AJdoi: 10.1128/MCB.00029-09
31217256Rrp5 Establishes a Checkpoint for 60S Assembly During 40S Maturation.RNA2019 Jun 19Khoshnevis Sdoi: 10.1261/rna.071225.119
17654514Evidence for involvement of NFBP in processing of ribosomal RNA.J Cell Physiol2008 FebSweet T-
21233221The roles of S1 RNA-binding domains in Rrp5's interactions with pre-rRNA.RNA2011 MarYoung CLdoi: 10.1261/rna.2458811
24239293Rrp5 binding at multiple sites coordinates pre-rRNA processing and assembly.Mol Cell2013 Dec 12Lebaron Sdoi: 10.1016/j.molcel.2013.10.017
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000471061PDCD11-203410--- (aa)--
ENST00000478543PDCD11-204717--- (aa)--
ENST00000648051PDCD11-206636--- (aa)--
ENST00000649849PDCD11-2076467XM_005269647ENSP000004982051872 (aa)XP_005269704UPI000047C5E6
ENST00000466959PDCD11-202500--- (aa)--
ENST00000369797PDCD11-2016453XM_011539539ENSP000003588121871 (aa)XP_011537841Q14690
ENST00000493610PDCD11-205732-ENSP0000047460638 (aa)-S4R3Q4
Gene Model
Click here to download ENSG00000148843's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000148843White Matter2E-925663218
ENSG00000148843White Matter3E-825663218
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000148843rs789440710103416422TWhite matter hyperintensity burden25663218EFO_0005665
ENSG00000148843rs789440710103416422TWhite matter hyperintensity burden25663218EFO_0005665
ENSG00000148843rs1119168310103410892TIntracranial volume30818988NR z score increase6.046EFO_0004886
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000148843's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000148843PDCD119944.633ENSAPOG00000015629pdcd119944.687Acanthochromis_polyacanthus
ENSG00000148843PDCD119987.433ENSAMEG00000017935PDCD119987.646Ailuropoda_melanoleuca
ENSG00000148843PDCD119254.286ENSACIG00000006458-9842.609Amphilophus_citrinellus
ENSG00000148843PDCD119944.574ENSAOCG00000015287pdcd119944.362Amphiprion_ocellaris
ENSG00000148843PDCD117243.202ENSAPEG00000020240pdcd119643.202Amphiprion_percula
ENSG00000148843PDCD117541.888ENSATEG00000021043pdcd119944.662Anabas_testudineus
ENSG00000148843PDCD119955.414ENSAPLG00000010301PDCD119955.603Anas_platyrhynchos
ENSG00000148843PDCD119954.584ENSACAG00000004796PDCD119954.521Anolis_carolinensis
ENSG00000148843PDCD119994.757ENSANAG00000034576PDCD119994.757Aotus_nancymaae
ENSG00000148843PDCD119165.320ENSACLG00000018236pdcd119960.405Astatotilapia_calliptera
ENSG00000148843PDCD119940.558ENSAMXG00000005458pdcd1110040.558Astyanax_mexicanus
ENSG00000148843PDCD1110084.869ENSBTAG00000009715PDCD1110084.869Bos_taurus
ENSG00000148843PDCD119994.004ENSCJAG00000018257PDCD119994.218Callithrix_jacchus
ENSG00000148843PDCD119987.934ENSCAFG00000010411PDCD1110088.041Canis_familiaris
ENSG00000148843PDCD1110087.687ENSCAFG00020010369PDCD1110087.273Canis_lupus_dingo
ENSG00000148843PDCD119984.435ENSCHIG00000025218PDCD1110084.488Capra_hircus
ENSG00000148843PDCD119878.844ENSTSYG00000033423PDCD119978.844Carlito_syrichta
ENSG00000148843PDCD119172.898ENSCAPG00000005386PDCD119972.898Cavia_aperea
ENSG00000148843PDCD1110081.493ENSCPOG00000010957PDCD119982.677Cavia_porcellus
ENSG00000148843PDCD119994.647ENSCCAG00000018950PDCD119994.647Cebus_capucinus
ENSG00000148843PDCD1110097.758ENSCATG00000044331PDCD1110097.758Cercocebus_atys
ENSG00000148843PDCD1110083.333ENSCLAG00000001029PDCD1110083.333Chinchilla_lanigera
ENSG00000148843PDCD1110097.755ENSCSAG00000005346PDCD1110097.755Chlorocebus_sabaeus
ENSG00000148843PDCD118496.899ENSCHOG00000004796PDCD119096.899Choloepus_hoffmanni
ENSG00000148843PDCD119172.386ENSCPBG00000024487PDCD119972.727Chrysemys_picta_bellii
ENSG00000148843PDCD119644.867ENSCING00000002715-9944.867Ciona_intestinalis
ENSG00000148843PDCD1110097.274ENSCANG00000043300PDCD1110097.274Colobus_angolensis_palliatus
ENSG00000148843PDCD1110082.231ENSCGRG00001006458Pdcd1110082.177Cricetulus_griseus_chok1gshd
ENSG00000148843PDCD1110082.177ENSCGRG00000003583Pdcd1110082.124Cricetulus_griseus_crigri
ENSG00000148843PDCD119743.730ENSCSEG00000010739pdcd119943.845Cynoglossus_semilaevis
ENSG00000148843PDCD119463.188ENSCVAG00000018903pdcd119957.353Cyprinodon_variegatus
ENSG00000148843PDCD119943.213ENSDARG00000052480pdcd119943.312Danio_rerio
ENSG00000148843PDCD1110086.528ENSDNOG00000013838PDCD1110086.528Dasypus_novemcinctus
ENSG00000148843PDCD1110083.663ENSDORG00000010420Pdcd1110083.556Dipodomys_ordii
ENSG00000148843PDCD116038.978FBgn0039182CG57287936.705Drosophila_melanogaster
ENSG00000148843PDCD119572.753ENSETEG00000000813PDCD1110072.753Echinops_telfairi
ENSG00000148843PDCD116952.740ENSEBUG00000002358-9552.740Eptatretus_burgeri
ENSG00000148843PDCD119688.511ENSEASG00005015159PDCD1110088.504Equus_asinus_asinus
ENSG00000148843PDCD1110088.539ENSECAG00000020507PDCD1110088.486Equus_caballus
ENSG00000148843PDCD119887.000ENSEEUG00000009245PDCD119187.000Erinaceus_europaeus
ENSG00000148843PDCD119987.840ENSFCAG00000002384PDCD119988.107Felis_catus
ENSG00000148843PDCD119956.017ENSFALG00000008775PDCD119955.957Ficedula_albicollis
ENSG00000148843PDCD1110082.074ENSFDAG00000009532PDCD1110082.021Fukomys_damarensis
ENSG00000148843PDCD119167.458ENSFHEG00000022997pdcd119667.458Fundulus_heteroclitus
ENSG00000148843PDCD119344.096ENSGMOG00000004186pdcd119444.511Gadus_morhua
ENSG00000148843PDCD117554.968ENSGALG00000008265PDCD119954.084Gallus_gallus
ENSG00000148843PDCD119943.030ENSGAFG00000012806pdcd119943.120Gambusia_affinis
ENSG00000148843PDCD119943.873ENSGACG00000018233pdcd119656.992Gasterosteus_aculeatus
ENSG00000148843PDCD119659.063ENSGAGG00000024314PDCD119958.987Gopherus_agassizii
ENSG00000148843PDCD1110098.985ENSGGOG00000011621PDCD1110098.985Gorilla_gorilla
ENSG00000148843PDCD119560.212ENSHBUG00000020226pdcd119944.574Haplochromis_burtoni
ENSG00000148843PDCD1110082.613ENSHGLG00000001462PDCD1110082.773Heterocephalus_glaber_female
ENSG00000148843PDCD1110082.027ENSHGLG00100018779PDCD1110082.133Heterocephalus_glaber_male
ENSG00000148843PDCD119942.910ENSHCOG00000016006pdcd119943.228Hippocampus_comes
ENSG00000148843PDCD116240.258ENSIPUG00000015102pdcd119941.558Ictalurus_punctatus
ENSG00000148843PDCD1110086.049ENSSTOG00000014553PDCD1110086.056Ictidomys_tridecemlineatus
ENSG00000148843PDCD1110083.814ENSJJAG00000015523Pdcd1110083.823Jaculus_jaculus
ENSG00000148843PDCD119948.966ENSLOCG00000011818pdcd119949.284Lepisosteus_oculatus
ENSG00000148843PDCD1110084.542ENSLAFG00000008398PDCD1110084.472Loxodonta_africana
ENSG00000148843PDCD1110097.862ENSMFAG00000044058PDCD1110097.862Macaca_fascicularis
ENSG00000148843PDCD1110097.862ENSMMUG00000007058PDCD1110097.862Macaca_mulatta
ENSG00000148843PDCD1110097.809ENSMNEG00000040726PDCD119997.809Macaca_nemestrina
ENSG00000148843PDCD1110095.938ENSMLEG00000040978PDCD1110095.938Mandrillus_leucophaeus
ENSG00000148843PDCD117541.239ENSMAMG00000009572pdcd119943.902Mastacembelus_armatus
ENSG00000148843PDCD119560.212ENSMZEG00005008949pdcd119944.468Maylandia_zebra
ENSG00000148843PDCD119956.492ENSMGAG00000010482PDCD119956.619Meleagris_gallopavo
ENSG00000148843PDCD1110078.983ENSMAUG00000014924Pdcd1110079.813Mesocricetus_auratus
ENSG00000148843PDCD1110089.744ENSMICG00000012421PDCD1110089.637Microcebus_murinus
ENSG00000148843PDCD1110081.930ENSMOCG00000021792Pdcd1110081.930Microtus_ochrogaster
ENSG00000148843PDCD119939.621ENSMMOG00000007572pdcd119643.621Mola_mola
ENSG00000148843PDCD119963.641ENSMODG00000011077PDCD119963.998Monodelphis_domestica
ENSG00000148843PDCD119355.840ENSMALG00000003859pdcd119651.852Monopterus_albus
ENSG00000148843PDCD119288.571MGP_CAROLIEiJ_G0023050Pdcd1110080.160Mus_caroli
ENSG00000148843PDCD1110080.499ENSMUSG00000025047Pdcd1110080.553Mus_musculus
ENSG00000148843PDCD1110080.595MGP_PahariEiJ_G0014540Pdcd1110080.649Mus_pahari
ENSG00000148843PDCD1110080.532MGP_SPRETEiJ_G0023971Pdcd1110080.585Mus_spretus
ENSG00000148843PDCD119987.774ENSMPUG00000016829PDCD1110088.094Mustela_putorius_furo
ENSG00000148843PDCD1110087.433ENSMLUG00000004997PDCD1110087.540Myotis_lucifugus
ENSG00000148843PDCD1110084.357ENSNGAG00000018143Pdcd1110084.517Nannospalax_galili
ENSG00000148843PDCD118555.357ENSNBRG00000021596pdcd119954.494Neolamprologus_brichardi
ENSG00000148843PDCD1110094.228ENSNLEG00000026700PDCD1110094.228Nomascus_leucogenys
ENSG00000148843PDCD117180.349ENSMEUG00000013719-7180.349Notamacropus_eugenii
ENSG00000148843PDCD1110081.163ENSOPRG00000010593PDCD1110081.163Ochotona_princeps
ENSG00000148843PDCD1110080.021ENSODEG00000008079PDCD119980.021Octodon_degus
ENSG00000148843PDCD119559.682ENSONIG00000018835pdcd119944.592Oreochromis_niloticus
ENSG00000148843PDCD119961.070ENSOANG00000001636-9961.017Ornithorhynchus_anatinus
ENSG00000148843PDCD1110087.473ENSOCUG00000006312PDCD1110087.473Oryctolagus_cuniculus
ENSG00000148843PDCD116942.970ENSORLG00000012995pdcd119642.970Oryzias_latipes
ENSG00000148843PDCD119943.434ENSORLG00020003642pdcd119943.601Oryzias_latipes_hni
ENSG00000148843PDCD119943.494ENSORLG00015001618pdcd119943.548Oryzias_latipes_hsok
ENSG00000148843PDCD117444.507ENSOMEG00000010904pdcd119844.346Oryzias_melastigma
ENSG00000148843PDCD1110088.515ENSOGAG00000008683PDCD1110088.515Otolemur_garnettii
ENSG00000148843PDCD119984.382ENSOARG00000003719PDCD1110084.435Ovis_aries
ENSG00000148843PDCD1110096.316ENSPPAG00000024593PDCD1110096.316Pan_paniscus
ENSG00000148843PDCD119988.053ENSPPRG00000015133PDCD119988.320Panthera_pardus
ENSG00000148843PDCD119988.053ENSPTIG00000011433PDCD119988.320Panthera_tigris_altaica
ENSG00000148843PDCD1110099.305ENSPTRG00000002911PDCD1110099.305Pan_troglodytes
ENSG00000148843PDCD1110097.862ENSPANG00000020959PDCD1110097.862Papio_anubis
ENSG00000148843PDCD119552.778ENSPKIG00000000973pdcd119945.891Paramormyrops_kingsleyae
ENSG00000148843PDCD119558.333ENSPSIG00000005102PDCD119557.441Pelodiscus_sinensis
ENSG00000148843PDCD116363.973ENSPMGG00000007289pdcd118863.973Periophthalmus_magnuspinnatus
ENSG00000148843PDCD1110081.954ENSPEMG00000010315Pdcd1110082.114Peromyscus_maniculatus_bairdii
ENSG00000148843PDCD119941.579ENSPMAG00000003098pdcd119941.842Petromyzon_marinus
ENSG00000148843PDCD1110067.937ENSPCIG00000001118PDCD1110067.725Phascolarctos_cinereus
ENSG00000148843PDCD119943.966ENSPFOG00000006012pdcd119944.185Poecilia_formosa
ENSG00000148843PDCD119942.205ENSPLAG00000014494pdcd119942.354Poecilia_latipinna
ENSG00000148843PDCD119454.021ENSPMEG00000018177pdcd119948.180Poecilia_mexicana
ENSG00000148843PDCD119944.125ENSPREG00000000475pdcd119944.391Poecilia_reticulata
ENSG00000148843PDCD1110097.106ENSPPYG00000002621PDCD1110097.106Pongo_abelii
ENSG00000148843PDCD117379.441ENSPCAG00000011663PDCD117579.441Procavia_capensis
ENSG00000148843PDCD1110081.818ENSPCOG00000023327PDCD1110081.818Propithecus_coquereli
ENSG00000148843PDCD1110086.940ENSPVAG00000004176PDCD1110086.994Pteropus_vampyrus
ENSG00000148843PDCD119560.212ENSPNYG00000003979pdcd119944.627Pundamilia_nyererei
ENSG00000148843PDCD119545.470ENSPNAG00000017225pdcd119945.836Pygocentrus_nattereri
ENSG00000148843PDCD1110080.970ENSRNOG00000020304Pdcd119981.023Rattus_norvegicus
ENSG00000148843PDCD1110097.435ENSRBIG00000011889PDCD1110097.435Rhinopithecus_bieti
ENSG00000148843PDCD1110097.381ENSRROG00000030483PDCD1110097.381Rhinopithecus_roxellana
ENSG00000148843PDCD118948.327YMR229C-9840.318Saccharomyces_cerevisiae
ENSG00000148843PDCD119992.030ENSSBOG00000030308PDCD119992.030Saimiri_boliviensis_boliviensis
ENSG00000148843PDCD119966.720ENSSHAG00000018258PDCD119966.667Sarcophilus_harrisii
ENSG00000148843PDCD119946.688ENSSFOG00015003881pdcd119946.556Scleropages_formosus
ENSG00000148843PDCD119944.497ENSSMAG00000006612pdcd119944.738Scophthalmus_maximus
ENSG00000148843PDCD1110048.132ENSSDUG00000021302pdcd119948.353Seriola_dumerili
ENSG00000148843PDCD116844.372ENSSLDG00000010228pdcd119844.444Seriola_lalandi_dorsalis
ENSG00000148843PDCD119280.000ENSSARG00000002540PDCD117491.071Sorex_araneus
ENSG00000148843PDCD119743.200ENSSPAG00000017558pdcd1110043.450Stegastes_partitus
ENSG00000148843PDCD1110086.201ENSSSCG00000010599PDCD1110086.455Sus_scrofa
ENSG00000148843PDCD117641.749ENSTRUG00000014291pdcd119941.958Takifugu_rubripes
ENSG00000148843PDCD119943.958ENSTNIG00000012085pdcd119944.063Tetraodon_nigroviridis
ENSG00000148843PDCD1110083.475ENSTBEG00000001893PDCD1110083.475Tupaia_belangeri
ENSG00000148843PDCD119981.320ENSTTRG00000003356PDCD119981.373Tursiops_truncatus
ENSG00000148843PDCD119987.753ENSUAMG00000018015PDCD1110088.072Ursus_americanus
ENSG00000148843PDCD1110086.139ENSUMAG00000023567PDCD1110086.458Ursus_maritimus
ENSG00000148843PDCD119280.000ENSVPAG00000007405PDCD118086.758Vicugna_pacos
ENSG00000148843PDCD119987.774ENSVVUG00000004457PDCD1110087.934Vulpes_vulpes
ENSG00000148843PDCD119949.761ENSXETG00000009482pdcd119949.894Xenopus_tropicalis
ENSG00000148843PDCD119845.545ENSXCOG00000012420pdcd119938.723Xiphophorus_couchianus
ENSG00000148843PDCD119944.533ENSXMAG00000004638pdcd119944.692Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding14624448.IPIFunction
GO:0005634nucleus14624448.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005829cytosol-IEAComponent
GO:0006364rRNA processing-TASProcess
GO:0006397mRNA processing-IEAProcess
GO:0008134transcription factor binding14624448.IPIFunction
GO:0032040small-subunit processome21873635.IBAComponent

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