EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000149657 (Gene tree)
Gene ID
149986
Gene Symbol
LSM14B
Alias
FT005|bA11M20.3|FLJ25473|LSM13|RAP55B|C20orf40|FAM61B
Full Name
LSM family member 14B
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
12,920 bases
Position
chr20:62,122,459-62,135,378
Accession
15887
RBP type
canonical RBP
Summary
(LSM Family Member 14B) is a Protein Coding gene. An important paralog of this gene is LSM14A.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000279068FDFPF09532.102.2e-2411
ENSP00000355209FDFPF09532.102e-1711
ENSP00000383172FDFPF09532.104.1e-0511
ENSP00000359953SM-ATXPF14438.67.4e-0811
ENSP00000279069SM-ATXPF14438.61e-0711
ENSP00000383172SM-ATXPF14438.61.5e-0711
ENSP00000279068SM-ATXPF14438.62.3e-0711
ENSP00000359953LSM14PF12701.71.2e-3011
ENSP00000279069LSM14PF12701.71.2e-3011
ENSP00000383172LSM14PF12701.71.8e-3011
ENSP00000279068LSM14PF12701.72.7e-3011
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000361670LSM14B-2031239XM_011528612ENSP00000355209248 (aa)XP_011526914Q5TBP9
ENST00000370915LSM14B-2041079-ENSP00000359953221 (aa)-A0A0C4DFV2
ENST00000279068LSM14B-2012548XM_005260302ENSP00000279068385 (aa)XP_005260359Q9BX40
ENST00000279069LSM14B-202811-ENSP00000279069223 (aa)-Q5TBQ1
ENST00000400318LSM14B-2051073-ENSP00000383172296 (aa)-Q5TBQ0
Gene Model
Click here to download ENSG00000149657's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000149657Blood Pressure7.0340796E-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000149657's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000149657LSM14B9255.769ENSG00000257103LSM14A10081.731
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000149657LSM14B10052.471ENSAPOG00000001780lsm14b9255.556Acanthochromis_polyacanthus
ENSG00000149657LSM14B10092.339ENSAMEG00000013430LSM14B10085.106Ailuropoda_melanoleuca
ENSG00000149657LSM14B6241.909ENSACIG00000003147LSM14B8841.597Amphilophus_citrinellus
ENSG00000149657LSM14B9955.882ENSACIG00000012266lsm14b9151.781Amphilophus_citrinellus
ENSG00000149657LSM14B10052.903ENSAOCG00000012380lsm14b9256.131Amphiprion_ocellaris
ENSG00000149657LSM14B9848.843ENSAOCG00000006667LSM14B9049.860Amphiprion_ocellaris
ENSG00000149657LSM14B9457.477ENSAPEG00000023633lsm14b9249.864Amphiprion_percula
ENSG00000149657LSM14B9837.500ENSATEG00000015895LSM14B8941.156Anabas_testudineus
ENSG00000149657LSM14B10049.839ENSATEG00000016603lsm14b9253.444Anabas_testudineus
ENSG00000149657LSM14B10080.000ENSAPLG00000013203LSM14B10075.255Anas_platyrhynchos
ENSG00000149657LSM14B9981.299ENSACAG00000016195LSM14B9981.299Anolis_carolinensis
ENSG00000149657LSM14B10096.883ENSANAG00000037915LSM14B10096.883Aotus_nancymaae
ENSG00000149657LSM14B8065.556ENSACLG00000019663lsm14b9154.696Astatotilapia_calliptera
ENSG00000149657LSM14B9961.179ENSAMXG00000002865lsm14b9961.905Astyanax_mexicanus
ENSG00000149657LSM14B10088.306ENSBTAG00000021558LSM14B10083.726Bos_taurus
ENSG00000149657LSM14B7953.714ENSBTAG00000053538-6061.268Bos_taurus
ENSG00000149657LSM14B10097.143ENSCJAG00000014434LSM14B10097.143Callithrix_jacchus
ENSG00000149657LSM14B10090.726ENSCAFG00000012518LSM14B9883.854Canis_familiaris
ENSG00000149657LSM14B10094.286ENSCAFG00020022150LSM14B10094.286Canis_lupus_dingo
ENSG00000149657LSM14B9969.474ENSCHIG00000022681-10069.474Capra_hircus
ENSG00000149657LSM14B10093.766ENSCHIG00000010284-10093.766Capra_hircus
ENSG00000149657LSM14B8995.322ENSTSYG00000031914LSM14B8995.322Carlito_syrichta
ENSG00000149657LSM14B10093.145ENSCAPG00000013059LSM14B10094.752Cavia_aperea
ENSG00000149657LSM14B10093.548ENSCPOG00000038080LSM14B10095.029Cavia_porcellus
ENSG00000149657LSM14B10097.403ENSCCAG00000021267LSM14B10097.403Cebus_capucinus
ENSG00000149657LSM14B10077.075ENSCCAG00000024900-7982.716Cebus_capucinus
ENSG00000149657LSM14B10099.221ENSCATG00000036006LSM14B10099.221Cercocebus_atys
ENSG00000149657LSM14B10092.339ENSCLAG00000003186LSM14B10094.152Chinchilla_lanigera
ENSG00000149657LSM14B10099.194ENSCSAG00000015729LSM14B10090.330Chlorocebus_sabaeus
ENSG00000149657LSM14B9962.041ENSCHOG00000006997-10058.394Choloepus_hoffmanni
ENSG00000149657LSM14B10078.715ENSCPBG00000027065LSM14B9977.251Chrysemys_picta_bellii
ENSG00000149657LSM14B8998.830ENSCANG00000036986LSM14B100100.000Colobus_angolensis_palliatus
ENSG00000149657LSM14B10095.584ENSCGRG00001018399Lsm14b10095.584Cricetulus_griseus_chok1gshd
ENSG00000149657LSM14B7580.645ENSCGRG00000002484-10083.539Cricetulus_griseus_crigri
ENSG00000149657LSM14B10091.935ENSCGRG00000006111-10081.208Cricetulus_griseus_crigri
ENSG00000149657LSM14B9948.684ENSCSEG00000020669LSM14B9247.594Cynoglossus_semilaevis
ENSG00000149657LSM14B10051.923ENSCSEG00000004722lsm14b9352.603Cynoglossus_semilaevis
ENSG00000149657LSM14B6537.255ENSCVAG00000012433-8836.402Cyprinodon_variegatus
ENSG00000149657LSM14B9956.746ENSDARG00000025386lsm14b9954.937Danio_rerio
ENSG00000149657LSM14B10087.097ENSDNOG00000025246LSM14B10077.377Dasypus_novemcinctus
ENSG00000149657LSM14B10089.113ENSDORG00000016683Lsm14b8891.884Dipodomys_ordii
ENSG00000149657LSM14B9975.584ENSETEG00000001869-10074.286Echinops_telfairi
ENSG00000149657LSM14B10072.177ENSETEG00000011188-10086.147Echinops_telfairi
ENSG00000149657LSM14B10091.935ENSEASG00005023218LSM14B10082.707Equus_asinus_asinus
ENSG00000149657LSM14B10095.325ENSECAG00000010659LSM14B10095.325Equus_caballus
ENSG00000149657LSM14B7474.737ENSEEUG00000007331LSM14B10074.737Erinaceus_europaeus
ENSG00000149657LSM14B9958.528ENSELUG00000005780lsm14b9261.732Esox_lucius
ENSG00000149657LSM14B10053.299ENSELUG00000016299LSM14B9953.197Esox_lucius
ENSG00000149657LSM14B10094.545ENSFCAG00000003248LSM14B10094.545Felis_catus
ENSG00000149657LSM14B10080.876ENSFALG00000010618LSM14B10076.486Ficedula_albicollis
ENSG00000149657LSM14B10091.532ENSFDAG00000002214LSM14B10094.444Fukomys_damarensis
ENSG00000149657LSM14B10049.136ENSFHEG00000006237lsm14b10050.123Fundulus_heteroclitus
ENSG00000149657LSM14B9639.677ENSFHEG00000003362LSM14B7645.066Fundulus_heteroclitus
ENSG00000149657LSM14B10051.938ENSGMOG00000017115lsm14b9151.549Gadus_morhua
ENSG00000149657LSM14B9984.794ENSGALG00000005125LSM14B9985.825Gallus_gallus
ENSG00000149657LSM14B10044.156ENSGAFG00000020318lsm14b9247.814Gambusia_affinis
ENSG00000149657LSM14B9930.488ENSGAFG00000013723LSM14B8738.034Gambusia_affinis
ENSG00000149657LSM14B9952.174ENSGACG00000009973lsm14b9255.899Gasterosteus_aculeatus
ENSG00000149657LSM14B7578.191ENSGAGG00000004106LSM14B9480.816Gopherus_agassizii
ENSG00000149657LSM14B100100.000ENSGGOG00000005630LSM14B9598.563Gorilla_gorilla
ENSG00000149657LSM14B10094.805ENSHGLG00000015055LSM14B10094.805Heterocephalus_glaber_female
ENSG00000149657LSM14B9991.429ENSHGLG00100015273LSM14B10092.398Heterocephalus_glaber_male
ENSG00000149657LSM14B9550.130ENSHCOG00000018747LSM14B9250.409Hippocampus_comes
ENSG00000149657LSM14B7539.037ENSHCOG00000004867lsm14b8645.106Hippocampus_comes
ENSG00000149657LSM14B10058.472ENSIPUG00000014946lsm14b8762.291Ictalurus_punctatus
ENSG00000149657LSM14B10093.548ENSSTOG00000020482LSM14B10096.199Ictidomys_tridecemlineatus
ENSG00000149657LSM14B9994.474ENSJJAG00000012728Lsm14b9994.474Jaculus_jaculus
ENSG00000149657LSM14B10052.326ENSKMAG00000017524lsm14b9352.316Kryptolebias_marmoratus
ENSG00000149657LSM14B6939.779ENSKMAG00000012834-8843.062Kryptolebias_marmoratus
ENSG00000149657LSM14B6375.177ENSLBEG00000016427lsm14b9775.177Labrus_bergylta
ENSG00000149657LSM14B6937.218ENSLBEG00000007951LSM14B8639.744Labrus_bergylta
ENSG00000149657LSM14B9967.529ENSLACG00000003849LSM14B9967.529Latimeria_chalumnae
ENSG00000149657LSM14B9963.077ENSLOCG00000003746lsm14b9963.077Lepisosteus_oculatus
ENSG00000149657LSM14B9089.884ENSLAFG00000007492LSM14B10089.884Loxodonta_africana
ENSG00000149657LSM14B10099.740ENSMFAG00000041479LSM14B10099.740Macaca_fascicularis
ENSG00000149657LSM14B10099.740ENSMMUG00000014084LSM14B10099.740Macaca_mulatta
ENSG00000149657LSM14B10099.740ENSMNEG00000045573LSM14B10099.740Macaca_nemestrina
ENSG00000149657LSM14B8999.123ENSMLEG00000040895LSM14B10099.438Mandrillus_leucophaeus
ENSG00000149657LSM14B9654.206ENSMAMG00000024124LSM14B9149.862Mastacembelus_armatus
ENSG00000149657LSM14B10049.840ENSMAMG00000020539lsm14b9254.324Mastacembelus_armatus
ENSG00000149657LSM14B9843.354ENSMZEG00005026001LSM14B9446.316Maylandia_zebra
ENSG00000149657LSM14B8065.556ENSMZEG00005000987lsm14b9154.696Maylandia_zebra
ENSG00000149657LSM14B9180.337ENSMGAG00000005300LSM14B10081.461Meleagris_gallopavo
ENSG00000149657LSM14B10094.545ENSMAUG00000020700Lsm14b10094.545Mesocricetus_auratus
ENSG00000149657LSM14B10096.623ENSMICG00000014675LSM14B10096.623Microcebus_murinus
ENSG00000149657LSM14B10094.545ENSMOCG00000020600Lsm14b10094.545Microtus_ochrogaster
ENSG00000149657LSM14B10076.210ENSMOCG00000005119-9367.164Microtus_ochrogaster
ENSG00000149657LSM14B9358.852ENSMMOG00000020042lsm14b9554.420Mola_mola
ENSG00000149657LSM14B9948.123ENSMMOG00000017321LSM14B9150.142Mola_mola
ENSG00000149657LSM14B10086.290ENSMODG00000016690LSM14B10075.738Monodelphis_domestica
ENSG00000149657LSM14B10049.430ENSMALG00000004783lsm14b9252.422Monopterus_albus
ENSG00000149657LSM14B9945.425ENSMALG00000022251LSM14B9245.767Monopterus_albus
ENSG00000149657LSM14B10094.286MGP_CAROLIEiJ_G0024770Lsm14b10094.286Mus_caroli
ENSG00000149657LSM14B10094.545ENSMUSG00000039108Lsm14b10094.545Mus_musculus
ENSG00000149657LSM14B10094.545MGP_PahariEiJ_G0026214Lsm14b10094.545Mus_pahari
ENSG00000149657LSM14B10094.545MGP_SPRETEiJ_G0025693Lsm14b10094.545Mus_spretus
ENSG00000149657LSM14B10089.919ENSMPUG00000007584LSM14B10079.901Mustela_putorius_furo
ENSG00000149657LSM14B10093.005ENSMLUG00000000304LSM14B10093.005Myotis_lucifugus
ENSG00000149657LSM14B7088.506ENSNGAG00000016550Lsm14b10090.476Nannospalax_galili
ENSG00000149657LSM14B8497.312ENSNGAG00000016305-9997.312Nannospalax_galili
ENSG00000149657LSM14B8998.830ENSNLEG00000015757LSM14B10099.438Nomascus_leucogenys
ENSG00000149657LSM14B8081.356ENSMEUG00000006305-8781.356Notamacropus_eugenii
ENSG00000149657LSM14B7796.479ENSMEUG00000008267-7696.479Notamacropus_eugenii
ENSG00000149657LSM14B5095.000ENSOPRG00000000447-5995.000Ochotona_princeps
ENSG00000149657LSM14B10095.844ENSODEG00000004099LSM14B10095.844Octodon_degus
ENSG00000149657LSM14B9852.733ENSONIG00000020318lsm14b9156.438Oreochromis_niloticus
ENSG00000149657LSM14B10090.135ENSOANG00000003370LSM14B9982.951Ornithorhynchus_anatinus
ENSG00000149657LSM14B8990.698ENSOCUG00000006279LSM14B10090.698Oryctolagus_cuniculus
ENSG00000149657LSM14B9943.322ENSORLG00000028353LSM14B9146.154Oryzias_latipes
ENSG00000149657LSM14B10046.965ENSORLG00000013525lsm14b9252.717Oryzias_latipes
ENSG00000149657LSM14B6134.100ENSORLG00020018191-8335.827Oryzias_latipes_hni
ENSG00000149657LSM14B10046.965ENSORLG00020020553lsm14b9252.717Oryzias_latipes_hni
ENSG00000149657LSM14B10046.965ENSORLG00015016862lsm14b9252.717Oryzias_latipes_hsok
ENSG00000149657LSM14B9943.042ENSORLG00015013157LSM14B9146.154Oryzias_latipes_hsok
ENSG00000149657LSM14B5736.184ENSOMEG00000000171-9738.314Oryzias_melastigma
ENSG00000149657LSM14B10049.231ENSOMEG00000023917lsm14b9252.151Oryzias_melastigma
ENSG00000149657LSM14B10093.548ENSOGAG00000003915LSM14B10087.028Otolemur_garnettii
ENSG00000149657LSM14B10090.323ENSOARG00000014706LSM14B9883.246Ovis_aries
ENSG00000149657LSM14B9098.563ENSPPAG00000035799LSM14B10098.876Pan_paniscus
ENSG00000149657LSM14B10094.286ENSPPRG00000009197LSM14B10094.286Panthera_pardus
ENSG00000149657LSM14B10090.726ENSPTIG00000021518LSM14B10081.323Panthera_tigris_altaica
ENSG00000149657LSM14B100100.000ENSPTRG00000013696LSM14B100100.000Pan_troglodytes
ENSG00000149657LSM14B10099.481ENSPANG00000011747LSM14B10099.481Papio_anubis
ENSG00000149657LSM14B9961.619ENSPKIG00000003275lsm14b9484.158Paramormyrops_kingsleyae
ENSG00000149657LSM14B10078.313ENSPSIG00000014762LSM14B10083.526Pelodiscus_sinensis
ENSG00000149657LSM14B6372.340ENSPMGG00000014569lsm14b8672.340Periophthalmus_magnuspinnatus
ENSG00000149657LSM14B9995.538ENSPEMG00000017688Lsm14b10095.538Peromyscus_maniculatus_bairdii
ENSG00000149657LSM14B10090.390ENSPCIG00000013405LSM14B10090.390Phascolarctos_cinereus
ENSG00000149657LSM14B10051.637ENSPFOG00000005631lsm14b9252.055Poecilia_formosa
ENSG00000149657LSM14B9550.901ENSPLAG00000005793LSM14B9148.199Poecilia_latipinna
ENSG00000149657LSM14B10051.646ENSPLAG00000002449lsm14b9252.066Poecilia_latipinna
ENSG00000149657LSM14B10051.139ENSPMEG00000000745lsm14b9251.515Poecilia_mexicana
ENSG00000149657LSM14B9943.000ENSPMEG00000022953LSM14B9147.671Poecilia_mexicana
ENSG00000149657LSM14B9934.286ENSPREG00000007828LSM14B8739.044Poecilia_reticulata
ENSG00000149657LSM14B10098.643ENSPPYG00000011194LSM14B10077.500Pongo_abelii
ENSG00000149657LSM14B10096.883ENSPCOG00000013625LSM14B10096.883Propithecus_coquereli
ENSG00000149657LSM14B10065.323ENSPVAG00000017918LSM14B10073.163Pteropus_vampyrus
ENSG00000149657LSM14B9961.381ENSPNAG00000012777lsm14b9961.381Pygocentrus_nattereri
ENSG00000149657LSM14B10090.726ENSRNOG00000054557Lsm14b10085.849Rattus_norvegicus
ENSG00000149657LSM14B10098.387ENSRBIG00000033461LSM14B9998.542Rhinopithecus_bieti
ENSG00000149657LSM14B10098.790ENSRROG00000042949LSM14B9199.140Rhinopithecus_roxellana
ENSG00000149657LSM14B10089.773ENSSBOG00000032820LSM14B10096.784Saimiri_boliviensis_boliviensis
ENSG00000149657LSM14B10085.484ENSSHAG00000015528LSM14B9688.986Sarcophilus_harrisii
ENSG00000149657LSM14B10053.770ENSSFOG00015004627lsm14b9262.259Scleropages_formosus
ENSG00000149657LSM14B10051.447ENSSMAG00000012725lsm14b9254.054Scophthalmus_maximus
ENSG00000149657LSM14B9752.083ENSSMAG00000000135LSM14B9252.603Scophthalmus_maximus
ENSG00000149657LSM14B10053.846ENSSDUG00000020977lsm14b9255.733Seriola_dumerili
ENSG00000149657LSM14B9950.492ENSSDUG00000022770LSM14B9253.297Seriola_dumerili
ENSG00000149657LSM14B9934.109ENSSLDG00000011354-8943.846Seriola_lalandi_dorsalis
ENSG00000149657LSM14B7582.353ENSSARG00000007749-10083.575Sorex_araneus
ENSG00000149657LSM14B10078.486ENSSPUG00000014360LSM14B9681.818Sphenodon_punctatus
ENSG00000149657LSM14B9831.967ENSSPAG00000018854-8838.462Stegastes_partitus
ENSG00000149657LSM14B10051.007ENSSPAG00000020915lsm14b9256.056Stegastes_partitus
ENSG00000149657LSM14B10092.468ENSSSCG00000026052LSM14B10078.689Sus_scrofa
ENSG00000149657LSM14B9084.483ENSTGUG00000007884LSM14B10084.483Taeniopygia_guttata
ENSG00000149657LSM14B9658.333ENSTRUG00000011354lsm14b9251.344Takifugu_rubripes
ENSG00000149657LSM14B9949.346ENSTRUG00000001529LSM14B9251.771Takifugu_rubripes
ENSG00000149657LSM14B10055.870ENSTNIG00000002445lsm14b9254.645Tetraodon_nigroviridis
ENSG00000149657LSM14B71100.000ENSTTRG00000011043LSM14B10061.097Tursiops_truncatus
ENSG00000149657LSM14B10092.339ENSUAMG00000025298LSM14B9988.329Ursus_americanus
ENSG00000149657LSM14B10092.339ENSUMAG00000000480LSM14B9988.329Ursus_maritimus
ENSG00000149657LSM14B10090.323ENSVVUG00000015920LSM14B9892.754Vulpes_vulpes
ENSG00000149657LSM14B9972.355ENSXETG00000001997lsm14b9977.370Xenopus_tropicalis
ENSG00000149657LSM14B10045.659ENSXMAG00000010013lsm14b9249.185Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22681889.HDAFunction
GO:0006417regulation of translation-IEAProcess
GO:0007275multicellular organism development-IEAProcess

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