EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Phenotypes

GWAS

PPI

Gene Ontology

Description

Ensembl ID: ENSG00000152242 (Gene tree)
Gene ID: 147339
Gene Symbol: C18orf25
Alias: MGC12909|ARKL1|RNF111L1|Ark2N
Full Name: chromosome 18 open reading frame 25
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 93,440 bases
Position: chr18:46,173,553-46,266,992
Accession: 28172
RBP type: non-canonical RBP
Summary: (Chromosome 18 Open Reading Frame 25) is a Protein Coding gene. An important paralog of this gene is RNF111.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000615052	C18orf25-203	5462	XM_011525822	ENSP00000481626	404 (aa)	XP_011524124	Q96B23
ENST00000619301	C18orf25-206	5264	XM_017025555	ENSP00000480074	343 (aa)	XP_016881044	Q96B23
ENST00000615553	C18orf25-204	2329	-	ENSP00000479398	275 (aa)	-	A0A087WVF1
ENST00000587591	C18orf25-201	668	-	ENSP00000467826	146 (aa)	-	K7EQH1
ENST00000619230	C18orf25-205	3744	-	-	- (aa)	-	-
ENST00000588730	C18orf25-202	586	-	ENSP00000468128	103 (aa)	-	K7ER64

Gene Model

Click here to download ENSG00000152242's gene model file

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000152242	Platelet Function Tests	1.7134100E-005	-
ENSG00000152242	Erythrocyte Indices	2E-13	27897004
ENSG00000152242	Clinical Laboratory Techniques	2E-13	27897004
ENSG00000152242	Erythrocytes	2E-10	27897004
ENSG00000152242	Clinical Laboratory Techniques	2E-10	27897004
ENSG00000152242	Erythrocyte Count	5E-9	28017375

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000152242	rs11356507	18	46236831	G	High light scatter reticulocyte count	27863252	[0.016-0.031] unit increase	0.02389735	EFO_0007986
ENSG00000152242	rs11356507	18	46236831	G	Reticulocyte count	27863252	[0.021-0.036] unit increase	0.02836095	EFO_0007986
ENSG00000152242	rs6507691	18	46228682	C	Mean corpuscular hemoglobin	27863252	[0.069-0.085] unit decrease	0.07736181	EFO_0004527
ENSG00000152242	rs9944715	18	46251293	G	Mean corpuscular volume	27863252	[0.066-0.082] unit decrease	0.0739437	EFO_0004526
ENSG00000152242	rs3842397	18	46265918	C	Mean platelet volume	27863252	[0.02-0.034] unit increase	0.02677698	EFO_0004584
ENSG00000152242	rs4890633	18	46253312	?	Mean corpuscular volume	28017375			EFO_0004526
ENSG00000152242	rs8095374	18	46213522	?	Clinical laboratory measurements	27897004			EFO_0004297\|EFO_0005047
ENSG00000152242	rs8095374	18	46213522	?	Clinical laboratory measurements	27897004			EFO_0004297\|EFO_0004527
ENSG00000152242	rs8095142	18	46213842	?	Mean corpuscular volume	29403010	[0.033-0.05] unit decrease novel	0.04156	EFO_0004526
ENSG00000152242	rs8095142	18	46213842	?	Mean corpuscular hemoglobin	29403010	[0.033-0.05] unit decrease novel	0.04126	EFO_0004527
ENSG00000152242	rs398032702	18	46245589	TA	Myeloid white cell count	27863252	[0.016-0.031] unit decrease	0.02360284	EFO_0007988
ENSG00000152242	rs9944715	18	46251293	G	Red cell distribution width	27863252	[0.083-0.099] unit increase	0.09054608	EFO_0005192
ENSG00000152242	rs3842397	18	46265918	C	Red cell distribution width	27863252	[0.076-0.09] unit increase	0.08348671	EFO_0005192
ENSG00000152242	rs3744858	18	46265306	T	White blood cell count	27863252	[0.018-0.034] unit decrease	0.02579685	EFO_0004308
ENSG00000152242	rs398032702	18	46245589	TA	Neutrophil count	27863252	[0.015-0.029] unit decrease	0.02180245	EFO_0004833
ENSG00000152242	rs398032702	18	46245589	TA	Granulocyte count	27863252	[0.015-0.029] unit decrease	0.02201497	EFO_0007987
ENSG00000152242	rs398032702	18	46245589	TA	Sum neutrophil eosinophil counts	27863252	[0.015-0.03] unit decrease	0.02237769	EFO_0004833\|EFO_0004842
ENSG00000152242	rs398032702	18	46245589	TA	Sum basophil neutrophil counts	27863252	[0.014-0.029] unit decrease	0.02162555	EFO_0004833\|EFO_0005090
ENSG00000152242	rs12963943	18	46225695	T	Red cell distribution width	28957414	[0.077-0.095] unit increase	0.0861728	EFO_0005192
ENSG00000152242	rs144667737	18	46189157	?	Red cell distribution width	30595370			EFO_0005192
ENSG00000152242	rs62098160	18	46252149	?	White blood cell count	30595370			EFO_0004308
ENSG00000152242	rs4890628	18	46208079	?	Red blood cell count	30595370			EFO_0004305

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000152242's network

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	25416956.	IPI	Function