EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000153201 (Gene tree)
Gene ID
5903
Gene Symbol
RANBP2
Alias
NUP358|ADANE|ANE1
Full Name
RAN binding protein 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
66,366 bases
Position
chr2:108,719,446-108,785,811
Accession
9848
RBP type
canonical RBP
Summary
RAN is a small GTP-binding protein of the RAS superfamily that is associated with the nuclear membrane and is thought to control a variety of cellular functions through its interactions with other proteins. This gene encodes a very large RAN-binding protein that immunolocalizes to the nuclear pore complex. The protein is a giant scaffold and mosaic cyclophilin-related nucleoporin implicated in the Ran-GTPase cycle. The encoded protein directly interacts with the E2 enzyme UBC9 and strongly enhances SUMO1 transfer from UBC9 to the SUMO1 target SP100. These findings place sumoylation at the cytoplasmic filaments of the nuclear pore complex and suggest that, for some substrates, modification and nuclear import are linked events. This gene is partially duplicated in a gene cluster that lies in a hot spot for recombination on chromosome 2q. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000283195zf-RanBPPF00641.188.3e-8418
ENSP00000283195zf-RanBPPF00641.188.3e-8428
ENSP00000283195zf-RanBPPF00641.188.3e-8438
ENSP00000283195zf-RanBPPF00641.188.3e-8448
ENSP00000283195zf-RanBPPF00641.188.3e-8458
ENSP00000283195zf-RanBPPF00641.188.3e-8468
ENSP00000283195zf-RanBPPF00641.188.3e-8478
ENSP00000283195zf-RanBPPF00641.188.3e-8488
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
22162216Targeting zinc finger domains with small molecules: solution structure and binding studies of the RanBP2-type zinc finger of RBM5.Chembiochem2011 Dec 16Farina Bdoi: 10.1002/cbic.201100582.
19304800The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences.Proc Natl Acad Sci U S A2009 Apr 7Loughlin FEdoi: 10.1073/pnas.0802466106
30792407Exploring the suitability of RanBP2-type Zinc Fingers for RNA-binding protein design.Sci Rep2019 Feb 21De Franco Sdoi: 10.1038/s41598-019-38655-y.
17168522An ent-kaurene that inhibits mitotic chromosome movement and binds the kinetochore protein ran-binding protein 2.ACS Chem Biol2006 Aug 22Rundle NT-
25410864Nuclear import of adenovirus DNA involves direct interaction of hexon with an N-terminal domain of the nucleoporin Nup214.J Virol2015 FebCassany Adoi: 10.1128/JVI.02639-14
25044781Engineering specificity changes on a RanBP2 zinc finger that binds single-stranded RNA.Angew Chem Int Ed Engl2014 Jul 21Vandevenne Mdoi: 10.1002/anie.201402980
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000629728RANBP2-205156-ENSP0000048597951 (aa)-F8WBP7
ENST00000495924RANBP2-204646--- (aa)--
ENST00000283195RANBP2-20111711XM_005264002ENSP000002831953224 (aa)XP_005264059P49792
ENST00000495506RANBP2-203544--- (aa)--
ENST00000425282RANBP2-202367-ENSP0000039897051 (aa)-F8WBP7
Gene Model
Click here to download ENSG00000153201's gene model file
Pathways
Pathway IDPathway NameSource
hsa03013RNA transportKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000153201rs1508447502108742827TAttention deficit hyperactivity disorder29325848[0.15-0.35] unit decrease0.25EFO_0003888
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000153201's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000153201RANBP29069.565ENSAPOG00000017146si:ch1073-55a19.210054.887Acanthochromis_polyacanthus
ENSG00000153201RANBP29987.363ENSAMEG00000013078RANBP210087.395Ailuropoda_melanoleuca
ENSG00000153201RANBP29067.391ENSACIG00000001203si:ch1073-55a19.210057.143Amphilophus_citrinellus
ENSG00000153201RANBP29069.565ENSAPEG00000012495si:ch1073-55a19.210054.135Amphiprion_percula
ENSG00000153201RANBP29067.391ENSATEG00000001716si:ch1073-55a19.210053.383Anabas_testudineus
ENSG00000153201RANBP29071.739ENSACAG00000002091RANBP210064.558Anolis_carolinensis
ENSG00000153201RANBP210093.369ENSANAG00000023124RANBP210093.369Aotus_nancymaae
ENSG00000153201RANBP29071.739ENSACLG00000020500si:ch1073-55a19.210060.606Astatotilapia_calliptera
ENSG00000153201RANBP210081.601ENSBTAG00000000152RANBP210081.780Bos_taurus
ENSG00000153201RANBP210093.957ENSCJAG00000001189RANBP210093.957Callithrix_jacchus
ENSG00000153201RANBP210083.535ENSCAFG00000023061RANBP210083.658Canis_familiaris
ENSG00000153201RANBP210089.360ENSCAFG00020009314RANBP210089.483Canis_lupus_dingo
ENSG00000153201RANBP29095.652ENSCHIG00000012686RANBP210081.063Capra_hircus
ENSG00000153201RANBP29988.655ENSTSYG00000001656RANBP210088.655Carlito_syrichta
ENSG00000153201RANBP29975.866ENSCAPG00000010687RANBP210074.879Cavia_aperea
ENSG00000153201RANBP210079.681ENSCPOG00000000392RANBP210079.376Cavia_porcellus
ENSG00000153201RANBP210093.957ENSCCAG00000028166RANBP210093.957Cebus_capucinus
ENSG00000153201RANBP210094.980ENSCATG00000032597RANBP29997.142Cercocebus_atys
ENSG00000153201RANBP210083.420ENSCLAG00000010533RANBP210083.420Chinchilla_lanigera
ENSG00000153201RANBP210096.217ENSCSAG00000017019RANBP210096.217Chlorocebus_sabaeus
ENSG00000153201RANBP26792.460ENSCHOG00000012659-6092.460Choloepus_hoffmanni
ENSG00000153201RANBP210069.143ENSCPBG00000006985RANBP210069.459Chrysemys_picta_bellii
ENSG00000153201RANBP29795.251ENSCANG00000041469RANBP210095.251Colobus_angolensis_palliatus
ENSG00000153201RANBP210087.041ENSCGRG00001000642Ranbp210087.041Cricetulus_griseus_chok1gshd
ENSG00000153201RANBP29987.019ENSCGRG00000008995Ranbp210087.019Cricetulus_griseus_crigri
ENSG00000153201RANBP210050.920ENSCSEG00000013280si:ch1073-55a19.210057.037Cynoglossus_semilaevis
ENSG00000153201RANBP29069.565ENSCVAG00000016050si:ch1073-55a19.210049.255Cyprinodon_variegatus
ENSG00000153201RANBP29065.217ENSDARG00000093125RANBP210057.037Danio_rerio
ENSG00000153201RANBP210084.254ENSDNOG00000040501RANBP210084.371Dasypus_novemcinctus
ENSG00000153201RANBP210089.527ENSDORG00000002206Ranbp210089.527Dipodomys_ordii
ENSG00000153201RANBP27786.657ENSETEG00000008891-6986.501Echinops_telfairi
ENSG00000153201RANBP29748.947ENSEBUG00000010057si:ch1073-55a19.28558.088Eptatretus_burgeri
ENSG00000153201RANBP210088.947ENSEASG00005012918RANBP210088.947Equus_asinus_asinus
ENSG00000153201RANBP210087.454ENSECAG00000008458RANBP29687.392Equus_caballus
ENSG00000153201RANBP29095.652ENSEEUG00000007806RANBP27991.538Erinaceus_europaeus
ENSG00000153201RANBP29862.381ENSELUG00000007763si:ch1073-55a19.29362.381Esox_lucius
ENSG00000153201RANBP29962.800ENSFALG00000003519RANBP29962.643Ficedula_albicollis
ENSG00000153201RANBP210080.279ENSFDAG00000016912RANBP210079.976Fukomys_damarensis
ENSG00000153201RANBP29071.739ENSFHEG00000009774si:ch1073-55a19.210054.887Fundulus_heteroclitus
ENSG00000153201RANBP29867.133ENSGMOG00000007071si:ch1073-55a19.29467.133Gadus_morhua
ENSG00000153201RANBP29067.391ENSGAFG00000010966si:ch1073-55a19.210056.716Gambusia_affinis
ENSG00000153201RANBP29071.739ENSGACG00000006831si:ch1073-55a19.210054.135Gasterosteus_aculeatus
ENSG00000153201RANBP29082.609ENSGAGG00000025039RANBP29969.168Gopherus_agassizii
ENSG00000153201RANBP29071.739ENSHBUG00000000053si:ch1073-55a19.210060.606Haplochromis_burtoni
ENSG00000153201RANBP210085.317ENSHGLG00000018887RANBP210085.317Heterocephalus_glaber_female
ENSG00000153201RANBP210082.971ENSHGLG00100007365RANBP210083.590Heterocephalus_glaber_male
ENSG00000153201RANBP29065.217ENSHCOG00000019596si:ch1073-55a19.210051.002Hippocampus_comes
ENSG00000153201RANBP29073.913ENSIPUG00000019614si:ch1073-55a19.29952.709Ictalurus_punctatus
ENSG00000153201RANBP210086.061ENSSTOG00000019518RANBP210083.938Ictidomys_tridecemlineatus
ENSG00000153201RANBP210086.507ENSJJAG00000021292Ranbp210086.507Jaculus_jaculus
ENSG00000153201RANBP29069.565ENSKMAG00000001158si:ch1073-55a19.210054.887Kryptolebias_marmoratus
ENSG00000153201RANBP29060.870ENSLBEG00000027979si:ch1073-55a19.29955.556Labrus_bergylta
ENSG00000153201RANBP210058.194ENSLACG00000009728RANBP210058.119Latimeria_chalumnae
ENSG00000153201RANBP29067.391ENSLOCG00000010333si:ch1073-55a19.210055.948Lepisosteus_oculatus
ENSG00000153201RANBP29095.652ENSLAFG00000000740RANBP210084.322Loxodonta_africana
ENSG00000153201RANBP210097.116ENSMFAG00000029029RANBP210097.116Macaca_fascicularis
ENSG00000153201RANBP210097.085ENSMMUG00000021019RANBP210097.085Macaca_mulatta
ENSG00000153201RANBP210097.209ENSMNEG00000043706RANBP210097.209Macaca_nemestrina
ENSG00000153201RANBP29996.420ENSMLEG00000037350RANBP210097.429Mandrillus_leucophaeus
ENSG00000153201RANBP29069.565ENSMAMG00000017900si:ch1073-55a19.210054.135Mastacembelus_armatus
ENSG00000153201RANBP29071.739ENSMZEG00005010956si:ch1073-55a19.210060.606Maylandia_zebra
ENSG00000153201RANBP29963.797ENSMGAG00000014831-9963.400Meleagris_gallopavo
ENSG00000153201RANBP210086.682ENSMAUG00000013313Ranbp210086.682Mesocricetus_auratus
ENSG00000153201RANBP210090.653ENSMICG00000011864RANBP210090.622Microcebus_murinus
ENSG00000153201RANBP210087.316ENSMOCG00000012516Ranbp210087.316Microtus_ochrogaster
ENSG00000153201RANBP29065.217ENSMMOG00000005743si:ch1073-55a19.210054.426Mola_mola
ENSG00000153201RANBP29884.267ENSMODG00000002914RANBP210084.267Monodelphis_domestica
ENSG00000153201RANBP29069.565ENSMALG00000004359si:ch1073-55a19.210052.593Monopterus_albus
ENSG00000153201RANBP29095.652ENSMUSG00000003226Ranbp210084.329Mus_musculus
ENSG00000153201RANBP29095.652MGP_PahariEiJ_G0030751Ranbp210084.447Mus_pahari
ENSG00000153201RANBP29095.652MGP_SPRETEiJ_G0016147Ranbp210084.506Mus_spretus
ENSG00000153201RANBP210088.640ENSMPUG00000010754RANBP210088.640Mustela_putorius_furo
ENSG00000153201RANBP29986.053ENSMLUG00000005555RANBP210086.053Myotis_lucifugus
ENSG00000153201RANBP210088.521ENSNGAG00000016154Ranbp210088.521Nannospalax_galili
ENSG00000153201RANBP29071.739ENSNBRG00000004587si:ch1073-55a19.210060.606Neolamprologus_brichardi
ENSG00000153201RANBP29994.580ENSNLEG00000007501RANBP29994.580Nomascus_leucogenys
ENSG00000153201RANBP29286.016ENSOPRG00000009720-9486.016Ochotona_princeps
ENSG00000153201RANBP210081.639ENSODEG00000013212RANBP210081.987Octodon_degus
ENSG00000153201RANBP29071.739ENSONIG00000004346si:ch1073-55a19.210059.398Oreochromis_niloticus
ENSG00000153201RANBP28069.894ENSOANG00000004894RANBP210070.061Ornithorhynchus_anatinus
ENSG00000153201RANBP29095.652ENSOCUG00000001165RANBP210083.525Oryctolagus_cuniculus
ENSG00000153201RANBP210050.313ENSORLG00000015523si:ch1073-55a19.210050.166Oryzias_latipes
ENSG00000153201RANBP29063.043ENSORLG00020003797si:ch1073-55a19.210056.391Oryzias_latipes_hni
ENSG00000153201RANBP210051.701ENSORLG00015004994si:ch1073-55a19.210056.391Oryzias_latipes_hsok
ENSG00000153201RANBP29069.565ENSOMEG00000022969si:ch1073-55a19.210054.887Oryzias_melastigma
ENSG00000153201RANBP210085.135ENSOGAG00000028976RANBP210086.069Otolemur_garnettii
ENSG00000153201RANBP29981.329ENSOARG00000000558RANBP210081.390Ovis_aries
ENSG00000153201RANBP210095.229ENSPANG00000000990RANBP210095.229Papio_anubis
ENSG00000153201RANBP29352.518ENSPKIG00000021054-9952.672Paramormyrops_kingsleyae
ENSG00000153201RANBP29067.391ENSPKIG00000010971RANBP210055.556Paramormyrops_kingsleyae
ENSG00000153201RANBP29968.694ENSPSIG00000007182RANBP29968.934Pelodiscus_sinensis
ENSG00000153201RANBP29487.895ENSPEMG00000021565Ranbp29787.895Peromyscus_maniculatus_bairdii
ENSG00000153201RANBP28555.797ENSPMAG00000007195si:ch1073-55a19.210061.314Petromyzon_marinus
ENSG00000153201RANBP29091.304ENSPCIG00000013912RANBP210077.743Phascolarctos_cinereus
ENSG00000153201RANBP29063.043ENSPFOG00000007377si:ch1073-55a19.210049.216Poecilia_formosa
ENSG00000153201RANBP29063.043ENSPLAG00000012373si:ch1073-55a19.210055.970Poecilia_latipinna
ENSG00000153201RANBP29063.043ENSPMEG00000005561si:ch1073-55a19.210049.065Poecilia_mexicana
ENSG00000153201RANBP29067.391ENSPREG00000013331si:ch1073-55a19.29966.923Poecilia_reticulata
ENSG00000153201RANBP27398.345ENSPPYG00000012139-10098.345Pongo_abelii
ENSG00000153201RANBP25590.826ENSPPYG00000029793-9990.826Pongo_abelii
ENSG00000153201RANBP29780.038ENSPCAG00000000957RANBP210080.038Procavia_capensis
ENSG00000153201RANBP210086.103ENSPCOG00000008879RANBP210089.628Propithecus_coquereli
ENSG00000153201RANBP29889.240ENSPVAG00000003883RANBP29489.240Pteropus_vampyrus
ENSG00000153201RANBP29071.739ENSPNYG00000015971si:ch1073-55a19.210060.606Pundamilia_nyererei
ENSG00000153201RANBP29071.739ENSPNAG00000026129si:ch1073-55a19.210051.526Pygocentrus_nattereri
ENSG00000153201RANBP210086.568ENSRNOG00000000796Ranbp210086.568Rattus_norvegicus
ENSG00000153201RANBP210094.672ENSRBIG00000043515RANBP210094.672Rhinopithecus_bieti
ENSG00000153201RANBP210094.574ENSRROG00000026113RANBP210094.574Rhinopithecus_roxellana
ENSG00000153201RANBP210093.317ENSSBOG00000035336RANBP210093.317Saimiri_boliviensis_boliviensis
ENSG00000153201RANBP29977.641ENSSHAG00000004676RANBP29977.641Sarcophilus_harrisii
ENSG00000153201RANBP29067.391ENSSFOG00015003943-9953.998Scleropages_formosus
ENSG00000153201RANBP29065.217ENSSFOG00015023201RANBP210057.037Scleropages_formosus
ENSG00000153201RANBP29069.565ENSSMAG00000007331si:ch1073-55a19.210054.676Scophthalmus_maximus
ENSG00000153201RANBP29069.565ENSSDUG00000013160si:ch1073-55a19.210054.135Seriola_dumerili
ENSG00000153201RANBP29069.565ENSSLDG00000023392si:ch1073-55a19.210054.676Seriola_lalandi_dorsalis
ENSG00000153201RANBP28987.975ENSSARG00000005595RANBP27787.975Sorex_araneus
ENSG00000153201RANBP29069.565ENSSPAG00000008000si:ch1073-55a19.210054.135Stegastes_partitus
ENSG00000153201RANBP29095.652ENSSSCG00000008136RANBP29884.711Sus_scrofa
ENSG00000153201RANBP29869.840ENSTGUG00000009571RANBP210069.919Taeniopygia_guttata
ENSG00000153201RANBP29590.210ENSTTRG00000007400RANBP29690.210Tursiops_truncatus
ENSG00000153201RANBP29489.667ENSUAMG00000020025RANBP29889.667Ursus_americanus
ENSG00000153201RANBP29681.542ENSVPAG00000006676RANBP29481.735Vicugna_pacos
ENSG00000153201RANBP210089.338ENSVVUG00000014899RANBP210089.338Vulpes_vulpes
ENSG00000153201RANBP29071.739ENSXETG00000016006ranbp29956.061Xenopus_tropicalis
ENSG00000153201RANBP29952.941ENSXCOG00000000752si:ch1073-55a19.29952.941Xiphophorus_couchianus
ENSG00000153201RANBP29069.565ENSXMAG00000003519si:ch1073-55a19.210052.941Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000413protein peptidyl-prolyl isomerization-IEAProcess
GO:0001975response to amphetamine-IEAProcess
GO:0003723RNA binding-IEAFunction
GO:0003755peptidyl-prolyl cis-trans isomerase activity20676357.IDAFunction
GO:0005096GTPase activator activity21873635.IBAFunction
GO:0005515protein binding10078529.14729961.16314522.16332688.20386726.21988832.22155184.23414517.24855949.26272610.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005635nuclear envelope20386726.IDAComponent
GO:0005635nuclear envelope-TASComponent
GO:0005642annulate lamellae20386726.IDAComponent
GO:0005643nuclear pore21873635.IBAComponent
GO:0005643nuclear pore17098863.20386726.IDAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005739mitochondrion-IEAComponent
GO:0005829cytosol-TASComponent
GO:0006110regulation of glycolytic process-TASProcess
GO:0006111regulation of gluconeogenesis-IEAProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0006409tRNA export from nucleus-TASProcess
GO:0006457protein folding-IEAProcess
GO:0006607NLS-bearing protein import into nucleus21873635.IBAProcess
GO:0006607NLS-bearing protein import into nucleus7603572.IMPProcess
GO:0008536Ran GTPase binding21873635.IBAFunction
GO:0008536Ran GTPase binding7603572.IPIFunction
GO:0016018cyclosporin A binding20676357.IDAFunction
GO:0016020membrane19946888.HDAComponent
GO:0016032viral process-TASProcess
GO:0016925protein sumoylation17264123.22155184.IDAProcess
GO:0016925protein sumoylation-IEAProcess
GO:0016925protein sumoylation-TASProcess
GO:0019083viral transcription-TASProcess
GO:0019789SUMO transferase activity11792325.15378033.15608651.16688858.EXPFunction
GO:0031965nuclear membrane11839768.IDAComponent
GO:0033133positive regulation of glucokinase activity-IEAProcess
GO:0042405nuclear inclusion body11839768.IDAComponent
GO:0043547positive regulation of GTPase activity-IEAProcess
GO:0043657host cell-IEAComponent
GO:0044614nuclear pore cytoplasmic filaments7603572.IDAComponent
GO:0044615nuclear pore nuclear basket11839768.IDAComponent
GO:0044877protein-containing complex binding-IEAFunction
GO:0046872metal ion binding-IEAFunction
GO:0051642centrosome localization20386726.IMPProcess
GO:0060964regulation of gene silencing by miRNA-TASProcess
GO:0075733intracellular transport of virus-TASProcess
GO:1900034regulation of cellular response to heat-TASProcess
GO:1990723cytoplasmic periphery of the nuclear pore complex-IEAComponent

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us