EuRBPDB

Description

Ensembl ID: ENSG00000153207 (Gene tree)
Gene ID: 25909
Gene Symbol: AHCTF1
Alias: ELYS
Full Name: AT-hook containing transcription factor 1
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 92,881 bases
Position: chr1:246,839,098-246,931,978
Accession: 24618
RBP type: non-canonical RBP
Summary: (AT-Hook Containing Transcription Factor 1) is a Protein Coding gene. Among its related pathways are Signaling by Rho GTPases and Gastric Cancer Network 2. Gene Ontology (GO) annotations related to this gene include DNA-binding transcription factor activity.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000470300	AHCTF1-203	7041	-	-	- (aa)	-	-
ENST00000483900	AHCTF1-205	3451	-	-	- (aa)	-	-
ENST00000477526	AHCTF1-204	571	-	-	- (aa)	-	-
ENST00000498601	AHCTF1-206	355	-	ENSP00000418007	80 (aa)	-	H7C4S1
ENST00000366508	AHCTF1-202	8751	XM_006711758	ENSP00000355464	2301 (aa)	XP_006711821	Q8WYP5
ENST00000326225	AHCTF1-201	8633	-	ENSP00000355465	2275 (aa)	-	Q8WYP5
ENST00000648844	AHCTF1-207	8892	XM_011544156	ENSP00000497061	2266 (aa)	XP_011542458	UPI0000456337

Gene Model

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000153207	Platelet Function Tests	9.7300000E-006	-
ENSG00000153207	Platelet Function Tests	2.0157600E-005	-
ENSG00000153207	Platelet Function Tests	3.6986000E-005	-

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000153207	AHCTF1	100	70.202	ENSMUSG00000026491	Ahctf1	100	70.333	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000777	condensed chromosome kinetochore	17098863.	IDA	Component
GO:0000785	chromatin	17098863.	IDA	Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	19274049.	ISM	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0005634	nucleus	17098863.	IDA	Component
GO:0005643	nuclear pore	17098863.	IDA	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005829	cytosol	-	TAS	Component
GO:0006357	regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016363	nuclear matrix	-	IEA	Component
GO:0031080	nuclear pore outer ring	17098863.	IDA	Component
GO:0031965	nuclear membrane	-	IDA	Component
GO:0032465	regulation of cytokinesis	17098863.	IMP	Process
GO:0051028	mRNA transport	-	IEA	Process
GO:0051292	nuclear pore complex assembly	17098863.	IMP	Process
GO:0051301	cell division	-	IEA	Process
GO:0070062	extracellular exosome	19056867.	HDA	Component