EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Phenotypes

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000155229 (Gene tree)
Gene ID: 64210
Gene Symbol: MMS19
Alias: MET18|hMMS19|CIAO4|MMS19L
Full Name: MMS19 homolog, cytosolic iron-sulfur assembly component
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 40,471 bases
Position: chr10:97,458,324-97,498,794
Accession: 13824
RBP type: non-canonical RBP
Summary: (MMS19 Homolog, Cytosolic Iron-Sulfur Assembly Component) is a Protein Coding gene. Among its related pathways are Metabolism and Cytosolic iron-sulfur cluster assembly. Gene Ontology (GO) annotations related to this gene include binding and protein binding, bridging.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
29431736	Capturing the interactome of newly transcribed RNA	RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000477575	MMS19-214	986	-	-	- (aa)	-	-
ENST00000444411	MMS19-212	640	-	ENSP00000415326	90 (aa)	-	H0Y7V3
ENST00000355839	MMS19-202	3555	XM_005270041	ENSP00000348097	987 (aa)	XP_005270098	Q96T76
ENST00000480108	MMS19-216	677	-	-	- (aa)	-	-
ENST00000437002	MMS19-208	933	-	ENSP00000409425	302 (aa)	-	Q5T454
ENST00000370782	MMS19-203	3532	-	ENSP00000359818	1030 (aa)	-	Q96T76
ENST00000478452	MMS19-215	835	-	-	- (aa)	-	-
ENST00000441194	MMS19-211	916	-	ENSP00000413801	40 (aa)	-	Q96T76
ENST00000495415	MMS19-219	1879	-	-	- (aa)	-	-
ENST00000483626	MMS19-217	884	-	-	- (aa)	-	-
ENST00000415383	MMS19-204	3401	-	ENSP00000395045	40 (aa)	-	Q96T76
ENST00000438925	MMS19-209	3797	XM_005270035	ENSP00000412698	1030 (aa)	XP_005270092	Q96T76
ENST00000422685	MMS19-205	877	-	ENSP00000391765	277 (aa)	-	B0QZ77
ENST00000434392	MMS19-206	882	-	ENSP00000402819	149 (aa)	-	H7C1W5
ENST00000485400	MMS19-218	1513	-	-	- (aa)	-	-
ENST00000448660	MMS19-213	776	-	ENSP00000393929	98 (aa)	-	H7C0A9
ENST00000434538	MMS19-207	2164	XM_006717945	ENSP00000410008	598 (aa)	XP_006718008	H0Y746
ENST00000327238	MMS19-201	3165	XM_017016519	ENSP00000320059	932 (aa)	XP_016872008	Q96T76
ENST00000439048	MMS19-210	609	-	ENSP00000400028	173 (aa)	-	F8WCH8

Gene Model

Click here to download ENSG00000155229's gene model file

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000155229	Platelet Function Tests	2.0385300E-005	-
ENSG00000155229	Platelet Function Tests	1.4531100E-005	-
ENSG00000155229	Platelet Function Tests	2.8458600E-005	-
ENSG00000155229	Platelet Function Tests	1.2440800E-005	-
ENSG00000155229	Platelet Function Tests	9.0878087E-006	-
ENSG00000155229	Platelet Function Tests	9.2748369E-006	-
ENSG00000155229	Tumor Necrosis Factor-alpha	2.5010000E-006	-

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000155229's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000155229	MMS19	66	59.322	FBgn0037301	Mms19	60	34.012	Drosophila_melanogaster

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000160	phosphorelay signal transduction system	11279242.	NAS	Process
GO:0003713	transcription coactivator activity	11279242.	IMP	Function
GO:0005515	protein binding	11279242.20797633.21516116.23585563.23891004.28178521.	IPI	Function
GO:0005634	nucleus	20797633.	IDA	Component
GO:0005634	nucleus	11071939.	TAS	Component
GO:0005654	nucleoplasm	-	IDA	Component
GO:0005675	transcription factor TFIIH holo complex	11279242.	NAS	Component
GO:0005737	cytoplasm	20797633.22678361.	IDA	Component
GO:0005819	spindle	20797633.	IDA	Component
GO:0005829	cytosol	-	IDA	Component
GO:0006259	DNA metabolic process	22678361.	IMP	Process
GO:0006281	DNA repair	22678362.	IMP	Process
GO:0006289	nucleotide-excision repair	11279242.	NAS	Process
GO:0006289	nucleotide-excision repair	11071939.	TAS	Process
GO:0006351	transcription, DNA-templated	11071939.	NAS	Process
GO:0006974	cellular response to DNA damage stimulus	22678362.	IMP	Process
GO:0007059	chromosome segregation	20797633.	IMP	Process
GO:0009725	response to hormone	11279242.	NAS	Process
GO:0016020	membrane	19946888.	HDA	Component
GO:0016226	iron-sulfur cluster assembly	22678361.22678362.	IMP	Process
GO:0019899	enzyme binding	-	IEA	Function
GO:0030159	receptor signaling complex scaffold activity	11279242.	NAS	Function
GO:0030331	estrogen receptor binding	11279242.	IPI	Function
GO:0030674	protein binding, bridging	11279242.	NAS	Function
GO:0045893	positive regulation of transcription, DNA-templated	11279242.	IMP	Process
GO:0071817	MMXD complex	20797633.	IDA	Component
GO:0097361	CIA complex	22678361.22678362.23585563.	IDA	Component
GO:0097428	protein maturation by iron-sulfur cluster transfer	29225034.	IDA	Process
GO:1905168	positive regulation of double-strand break repair via homologous recombination	29225034.	IDA	Process