EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000155636 (Gene tree)
Gene ID
129831
Gene Symbol
RBM45
Alias
DRB1|FLJ44612
Full Name
RNA binding motif protein 45
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
26,595 bases
Position
chr2:178,112,417-178,139,011
Accession
24468
RBP type
canonical RBP
Summary
This gene encodes a member of the RNA recognition motif (RRM)-type RNA-binding family of proteins. This protein exhibits preferential binding to poly(C) RNA. Initial cloning of this gene found that the rat ortholog was dynamically expressed in the developing rat brain. This protein has been localized to inclusion bodies in the brain and spinal cord of amyotrophic lateral sclerosis and Alzheimer's patients. A pseudogene has been identified on chromosome 8. [provided by RefSeq, Feb 2015]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000286070RRM_1PF00076.225.7e-4614
ENSP00000286070RRM_1PF00076.225.7e-4624
ENSP00000286070RRM_1PF00076.225.7e-4634
ENSP00000286070RRM_1PF00076.225.7e-4644
ENSP00000482083RRM_1PF00076.225.9e-4614
ENSP00000482083RRM_1PF00076.225.9e-4624
ENSP00000482083RRM_1PF00076.225.9e-4634
ENSP00000482083RRM_1PF00076.225.9e-4644
ENSP00000415940RRM_1PF00076.222.5e-0611
ENSP00000389134RRM_1PF00076.220.0002111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
28980860 behavior of proteins involved in amyotrophic lateral sclerosis and frontotemporal lobar degeneration.Autophagy2017Uversky VNdoi: 10.1080/15548627.2017.1384889
27226551Developmentally Regulated RNA-binding Protein 1 (Drb1)/RNA-binding Motif Protein 45 (RBM45), a Nuclear-Cytoplasmic Trafficking Protein, Forms TAR DNA-binding Protein 43 (TDP-43)-mediated Cytoplasmic Aggregates.J Biol Chem2016 Jul 15Mashiko Tdoi: 10.1074/jbc.M115.712232
12220514cDNA cloning and characterization of Drb1, a new member of RRM-type neural RNA-binding protein.Biochem Biophys Res Commun2002 Sep 13Tamada H-
18782777Protection of cardiomyocytes from ischemic/hypoxic cell death via Drbp1 and pMe2GlyDH in cardio-specific ARC transgenic mice.J Biol Chem2008 Nov 7Pyo JOdoi: 10.1074/jbc.M804209200
22993125The RNA-binding motif 45 (RBM45) protein accumulates in inclusion bodies in amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration with TDP-43 inclusions (FTLD-TDP) patients.Acta Neuropathol2012 NovCollins Mdoi: 10.1007/s00401-012-1045-x
26391765RBM45 homo-oligomerization mediates association with ALS-linked proteins and stress granules.Sci Rep2015 Sep 22Li Ydoi: 10.1038/srep14262.
25939382RBM45 Modulates the Antioxidant Response in Amyotrophic Lateral Sclerosis through Interactions with KEAP1.Mol Cell Biol2015 JulBakkar Ndoi: 10.1128/MCB.00087-15
30992467RNA recognition motifs of disease-linked RNA-binding proteins contribute to amyloid formation.Sci Rep2019 Apr 16Agrawal Sdoi: 10.1038/s41598-019-42367-8.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000464647RBM45-205400--- (aa)--
ENST00000493048RBM45-206735--- (aa)--
ENST00000424099RBM45-203488-ENSP0000038913473 (aa)-H7BZE0
ENST00000424000RBM45-2021992--- (aa)--
ENST00000286070RBM45-2011785XM_017003320ENSP00000286070474 (aa)XP_016858809Q8IUH3
ENST00000455903RBM45-2042964-ENSP00000415940135 (aa)-H7C476
ENST00000616198RBM45-2071788XM_005246287ENSP00000482083476 (aa)XP_005246344Q8IUH3
Gene Model
Click here to download ENSG00000155636's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000155636's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000155636RBM456134.783ENSG00000107105ELAVL28834.783
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000155636RBM459961.481ENSAPOG00000009219rbm459857.783Acanthochromis_polyacanthus
ENSG00000155636RBM4510097.899ENSAMEG00000000896RBM4510097.899Ailuropoda_melanoleuca
ENSG00000155636RBM459961.194ENSACIG00000009234rbm459858.747Amphilophus_citrinellus
ENSG00000155636RBM459960.741ENSAOCG00000007638rbm459957.388Amphiprion_ocellaris
ENSG00000155636RBM459960.741ENSAPEG00000014352rbm459957.356Amphiprion_percula
ENSG00000155636RBM459962.963ENSATEG00000016948rbm459859.436Anabas_testudineus
ENSG00000155636RBM458684.127ENSAPLG00000011049RBM4510073.615Anas_platyrhynchos
ENSG00000155636RBM4510099.367ENSANAG00000034660RBM4510099.367Aotus_nancymaae
ENSG00000155636RBM459962.687ENSACLG00000027286rbm459859.395Astatotilapia_calliptera
ENSG00000155636RBM459962.687ENSACLG00000027201-9859.219Astatotilapia_calliptera
ENSG00000155636RBM459963.971ENSAMXG00000007463rbm459863.478Astyanax_mexicanus
ENSG00000155636RBM4510095.992ENSBTAG00000006168RBM4510095.992Bos_taurus
ENSG00000155636RBM459997.761ENSCJAG00000021516RBM4510091.250Callithrix_jacchus
ENSG00000155636RBM4510096.667ENSCAFG00000013640RBM4510096.667Canis_familiaris
ENSG00000155636RBM4510097.679ENSCAFG00020007013RBM4510097.679Canis_lupus_dingo
ENSG00000155636RBM4510096.203ENSCHIG00000010687RBM4510096.203Capra_hircus
ENSG00000155636RBM4510099.156ENSTSYG00000007757RBM4510099.156Carlito_syrichta
ENSG00000155636RBM459993.284ENSCAPG00000009388RBM459385.302Cavia_aperea
ENSG00000155636RBM4510094.583ENSCPOG00000000684RBM4510094.583Cavia_porcellus
ENSG00000155636RBM4510099.367ENSCCAG00000022783RBM4510099.367Cebus_capucinus
ENSG00000155636RBM4510099.580ENSCATG00000041082RBM4510099.580Cercocebus_atys
ENSG00000155636RBM459786.076ENSCLAG00000015215RBM4510085.758Chinchilla_lanigera
ENSG00000155636RBM4510099.578ENSCSAG00000014231RBM4510099.578Chlorocebus_sabaeus
ENSG00000155636RBM459996.269ENSCHOG00000009809RBM4510096.791Choloepus_hoffmanni
ENSG00000155636RBM459874.043ENSCPBG00000003246RBM459974.043Chrysemys_picta_bellii
ENSG00000155636RBM4510099.578ENSCANG00000040777RBM4510099.578Colobus_angolensis_palliatus
ENSG00000155636RBM4510093.501ENSCGRG00001005759Rbm4510093.501Cricetulus_griseus_chok1gshd
ENSG00000155636RBM4510093.501ENSCGRG00000010816Rbm4510093.501Cricetulus_griseus_crigri
ENSG00000155636RBM459959.259ENSCSEG00000017409rbm459853.548Cynoglossus_semilaevis
ENSG00000155636RBM459962.687ENSCVAG00000016127rbm459956.616Cyprinodon_variegatus
ENSG00000155636RBM458676.190ENSDARG00000063731rbm459962.304Danio_rerio
ENSG00000155636RBM4510095.368ENSDNOG00000001973RBM4510095.789Dasypus_novemcinctus
ENSG00000155636RBM4510095.570ENSDORG00000015831Rbm4510095.570Dipodomys_ordii
ENSG00000155636RBM459336.069FBgn0035526CG13169635.451Drosophila_melanogaster
ENSG00000155636RBM459996.269ENSETEG00000013424RBM4510086.134Echinops_telfairi
ENSG00000155636RBM459947.246ENSEBUG00000007042rbm459947.669Eptatretus_burgeri
ENSG00000155636RBM4510098.101ENSEASG00005022475RBM4510098.101Equus_asinus_asinus
ENSG00000155636RBM4510098.101ENSECAG00000017129RBM4510098.101Equus_caballus
ENSG00000155636RBM459996.269ENSEEUG00000001843RBM4510095.984Erinaceus_europaeus
ENSG00000155636RBM459960.145ENSELUG00000020878-9860.606Esox_lucius
ENSG00000155636RBM459959.420ENSELUG00000023238rbm459958.761Esox_lucius
ENSG00000155636RBM4510097.679ENSFCAG00000018793RBM4510097.679Felis_catus
ENSG00000155636RBM459966.187ENSFALG00000003330RBM4510070.526Ficedula_albicollis
ENSG00000155636RBM459993.333ENSFDAG00000006840-10094.969Fukomys_damarensis
ENSG00000155636RBM458669.841ENSFHEG00000012844rbm458555.438Fundulus_heteroclitus
ENSG00000155636RBM459958.209ENSGMOG00000002427rbm459857.391Gadus_morhua
ENSG00000155636RBM459970.084ENSGALG00000009202RBM459569.792Gallus_gallus
ENSG00000155636RBM459963.433ENSGAFG00000003709rbm459857.918Gambusia_affinis
ENSG00000155636RBM459956.716ENSGACG00000011659rbm4510056.156Gasterosteus_aculeatus
ENSG00000155636RBM458571.569ENSGAGG00000017616RBM459972.794Gopherus_agassizii
ENSG00000155636RBM4510099.789ENSGGOG00000013981RBM4510099.789Gorilla_gorilla
ENSG00000155636RBM459962.687ENSHBUG00000015980rbm459859.219Haplochromis_burtoni
ENSG00000155636RBM459994.776ENSHGLG00000007342RBM4510094.770Heterocephalus_glaber_female
ENSG00000155636RBM458596.774ENSHGLG00100007533-10064.286Heterocephalus_glaber_male
ENSG00000155636RBM459994.776ENSHGLG00100011482-9994.796Heterocephalus_glaber_male
ENSG00000155636RBM459960.870ENSHCOG00000000850rbm4510058.848Hippocampus_comes
ENSG00000155636RBM459965.217ENSIPUG00000019576RBM459863.478Ictalurus_punctatus
ENSG00000155636RBM4510098.101ENSSTOG00000002708RBM4510098.101Ictidomys_tridecemlineatus
ENSG00000155636RBM458795.146ENSJJAG00000001312Rbm459493.112Jaculus_jaculus
ENSG00000155636RBM459957.463ENSKMAG00000007636rbm459856.745Kryptolebias_marmoratus
ENSG00000155636RBM459960.000ENSLBEG00000011642rbm459959.002Labrus_bergylta
ENSG00000155636RBM459960.000ENSLBEG00000002556-9958.901Labrus_bergylta
ENSG00000155636RBM459868.685ENSLACG00000003728RBM459968.685Latimeria_chalumnae
ENSG00000155636RBM459963.768ENSLOCG00000006862rbm459964.026Lepisosteus_oculatus
ENSG00000155636RBM459996.269ENSLAFG00000007464RBM4510094.087Loxodonta_africana
ENSG00000155636RBM4510099.578ENSMFAG00000042524RBM4510099.578Macaca_fascicularis
ENSG00000155636RBM4510099.578ENSMMUG00000002013RBM4510099.578Macaca_mulatta
ENSG00000155636RBM4510099.578ENSMNEG00000029136RBM4510099.578Macaca_nemestrina
ENSG00000155636RBM4510099.578ENSMLEG00000042404RBM4510099.578Mandrillus_leucophaeus
ENSG00000155636RBM459962.222ENSMAMG00000022413rbm459959.740Mastacembelus_armatus
ENSG00000155636RBM459962.687ENSMZEG00005027295rbm459859.219Maylandia_zebra
ENSG00000155636RBM458680.952ENSMGAG00000009496RBM4510071.693Meleagris_gallopavo
ENSG00000155636RBM4510093.291ENSMAUG00000016948Rbm4510093.291Mesocricetus_auratus
ENSG00000155636RBM4510098.734ENSMICG00000003787RBM4510098.734Microcebus_murinus
ENSG00000155636RBM4510091.597ENSMOCG00000017295Rbm4510091.597Microtus_ochrogaster
ENSG00000155636RBM459960.741ENSMMOG00000006808rbm459959.188Mola_mola
ENSG00000155636RBM4510093.082ENSMODG00000009742RBM4510093.082Monodelphis_domestica
ENSG00000155636RBM459961.940ENSMALG00000022126rbm459960.440Monopterus_albus
ENSG00000155636RBM4510091.176MGP_CAROLIEiJ_G0023686Rbm4510091.176Mus_caroli
ENSG00000155636RBM4510090.546ENSMUSG00000042369Rbm4510090.546Mus_musculus
ENSG00000155636RBM4510092.227MGP_PahariEiJ_G0025137Rbm4510092.227Mus_pahari
ENSG00000155636RBM4510090.966MGP_SPRETEiJ_G0024607Rbm4510090.966Mus_spretus
ENSG00000155636RBM4510097.890ENSMPUG00000003205RBM4510097.890Mustela_putorius_furo
ENSG00000155636RBM459995.522ENSMLUG00000005782RBM4510081.743Myotis_lucifugus
ENSG00000155636RBM4510095.359ENSNGAG00000023886Rbm4510095.359Nannospalax_galili
ENSG00000155636RBM459673.256ENSNBRG00000008816rbm459773.256Neolamprologus_brichardi
ENSG00000155636RBM4510099.367ENSNLEG00000006080RBM4510099.367Nomascus_leucogenys
ENSG00000155636RBM458193.407ENSMEUG00000007995-6393.407Notamacropus_eugenii
ENSG00000155636RBM458698.413ENSOPRG00000002626RBM458595.763Ochotona_princeps
ENSG00000155636RBM459993.284ENSODEG00000007959RBM4510094.561Octodon_degus
ENSG00000155636RBM459961.940ENSONIG00000001450rbm4510058.798Oreochromis_niloticus
ENSG00000155636RBM459986.861ENSOANG00000008627RBM4510086.579Ornithorhynchus_anatinus
ENSG00000155636RBM4510098.312ENSOCUG00000001125RBM4510098.312Oryctolagus_cuniculus
ENSG00000155636RBM459960.000ENSORLG00000024508rbm459859.259Oryzias_latipes
ENSG00000155636RBM459960.000ENSOMEG00000015870rbm459859.477Oryzias_melastigma
ENSG00000155636RBM459998.507ENSOGAG00000015195RBM4510095.992Otolemur_garnettii
ENSG00000155636RBM4510094.958ENSOARG00000017348RBM4510094.958Ovis_aries
ENSG00000155636RBM45100100.000ENSPPAG00000026278RBM45100100.000Pan_paniscus
ENSG00000155636RBM4510097.679ENSPPRG00000017073RBM4510097.679Panthera_pardus
ENSG00000155636RBM4510097.679ENSPTIG00000021277RBM4510097.679Panthera_tigris_altaica
ENSG00000155636RBM45100100.000ENSPTRG00000012686RBM45100100.000Pan_troglodytes
ENSG00000155636RBM4510099.578ENSPANG00000016088RBM4510099.578Papio_anubis
ENSG00000155636RBM459763.812ENSPKIG00000000284rbm459963.812Paramormyrops_kingsleyae
ENSG00000155636RBM458684.127ENSPSIG00000002884RBM4510070.822Pelodiscus_sinensis
ENSG00000155636RBM458666.667ENSPMGG00000001551rbm459853.913Periophthalmus_magnuspinnatus
ENSG00000155636RBM4510093.291ENSPEMG00000002470Rbm4510093.291Peromyscus_maniculatus_bairdii
ENSG00000155636RBM459650.959ENSPMAG00000002965rbm459850.959Petromyzon_marinus
ENSG00000155636RBM4510093.291ENSPCIG00000025402RBM4510093.291Phascolarctos_cinereus
ENSG00000155636RBM459962.687ENSPFOG00000006641rbm459857.826Poecilia_formosa
ENSG00000155636RBM459962.687ENSPLAG00000010571rbm459857.826Poecilia_latipinna
ENSG00000155636RBM459962.687ENSPMEG00000001067rbm459857.826Poecilia_mexicana
ENSG00000155636RBM459963.433ENSPREG00000004579rbm459858.696Poecilia_reticulata
ENSG00000155636RBM45100100.000ENSPPYG00000012974RBM45100100.000Pongo_abelii
ENSG00000155636RBM458894.915ENSPCAG00000004338RBM457994.915Procavia_capensis
ENSG00000155636RBM4510098.945ENSPCOG00000021526RBM4510098.945Propithecus_coquereli
ENSG00000155636RBM4510097.679ENSPVAG00000010390RBM4510097.679Pteropus_vampyrus
ENSG00000155636RBM459962.687ENSPNYG00000010755rbm4510054.082Pundamilia_nyererei
ENSG00000155636RBM459963.768ENSPNAG00000021750rbm459863.478Pygocentrus_nattereri
ENSG00000155636RBM4510092.017ENSRNOG00000010595Rbm4510092.017Rattus_norvegicus
ENSG00000155636RBM4510099.367ENSRBIG00000033680RBM4510099.367Rhinopithecus_bieti
ENSG00000155636RBM4510099.367ENSRROG00000031398RBM4510099.367Rhinopithecus_roxellana
ENSG00000155636RBM4510099.578ENSSBOG00000005469RBM4510099.578Saimiri_boliviensis_boliviensis
ENSG00000155636RBM459991.971ENSSHAG00000005667RBM4510092.084Sarcophilus_harrisii
ENSG00000155636RBM459966.418ENSSFOG00015012262rbm459963.812Scleropages_formosus
ENSG00000155636RBM458856.132ENSSMAG00000001822rbm459456.132Scophthalmus_maximus
ENSG00000155636RBM459960.741ENSSDUG00000014461rbm459858.442Seriola_dumerili
ENSG00000155636RBM459960.741ENSSLDG00000017621rbm459858.442Seriola_lalandi_dorsalis
ENSG00000155636RBM459995.522ENSSARG00000001516RBM4510081.132Sorex_araneus
ENSG00000155636RBM458684.127ENSSPUG00000005740RBM459164.894Sphenodon_punctatus
ENSG00000155636RBM459960.741ENSSPAG00000023188rbm459957.143Stegastes_partitus
ENSG00000155636RBM4510097.046ENSSSCG00000015996RBM4510098.413Sus_scrofa
ENSG00000155636RBM459670.870ENSTGUG00000009116-9769.102Taeniopygia_guttata
ENSG00000155636RBM456271.861ENSTGUG00000015654-10071.861Taeniopygia_guttata
ENSG00000155636RBM459958.955ENSTRUG00000005485rbm459958.606Takifugu_rubripes
ENSG00000155636RBM458867.188ENSTNIG00000009859rbm459854.371Tetraodon_nigroviridis
ENSG00000155636RBM456787.209ENSTBEG00000014236-10087.891Tupaia_belangeri
ENSG00000155636RBM459997.015ENSTTRG00000007653RBM4510088.397Tursiops_truncatus
ENSG00000155636RBM4510098.101ENSUAMG00000012989RBM4510098.101Ursus_americanus
ENSG00000155636RBM459997.015ENSUMAG00000016503RBM4510094.726Ursus_maritimus
ENSG00000155636RBM457297.059ENSVPAG00000001558RBM4510097.059Vicugna_pacos
ENSG00000155636RBM4510097.679ENSVVUG00000010078RBM4510097.679Vulpes_vulpes
ENSG00000155636RBM458881.250ENSXETG00000015007rbm459967.081Xenopus_tropicalis
ENSG00000155636RBM459962.687ENSXCOG00000014247rbm459856.550Xiphophorus_couchianus
ENSG00000155636RBM459962.687ENSXMAG00000026302rbm459858.043Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding12220514.IDAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005515protein binding25416956.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus12220514.IDAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm12220514.IDAComponent
GO:0007399nervous system development-ISSProcess
GO:0030154cell differentiation-IEAProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent

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