EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • PRI
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000156502 (Gene tree)
Gene ID
6832
Gene Symbol
SUPV3L1
Alias
SUV3
Full Name
Suv3 like RNA helicase
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
28,896 bases
Position
chr10:69,180,204-69,209,099
Accession
11471
RBP type
canonical RBP
Summary
(Suv3 Like RNA Helicase) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include RNA binding.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000352678SUV3_CPF12513.85.4e-1611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Protein-RNA interaction(RNA-Binding Site)
Click here to download all RNA binding sites
Click here to download all RNA binding sites

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
29311576Structural analysis of mtEXO mitochondrial RNA degradosome reveals tight coupling of nuclease and helicase components.Nat Commun2018 Jan 8Razew Mdoi: 10.1038/s41467-017-02570-5.
19509288Human mitochondrial SUV3 and polynucleotide phosphorylase form a 330-kDa heteropentamer to cooperatively degrade double-stranded RNA with a 3'-to-5' directionality.J Biol Chem2009 Jul 31Wang DDdoi: 10.1074/jbc.M109.009605
24770417Helicase SUV3, polynucleotide phosphorylase, and mitochondrial polyadenylation polymerase form a transient complex to modulate mitochondrial mRNA polyadenylated tail lengths in response to energetic changes.J Biol Chem2014 Jun 13Wang DDdoi: 10.1074/jbc.M113.536540
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000471069SUPV3L1-2032392--- (aa)--
ENST00000486661SUPV3L1-206518--- (aa)--
ENST00000422378SUPV3L1-202794-ENSP00000409072263 (aa)-B1AR60
ENST00000483572SUPV3L1-2051025--- (aa)--
ENST00000497254SUPV3L1-207666--- (aa)--
ENST00000478227SUPV3L1-204597--- (aa)--
ENST00000359655SUPV3L1-2012484-ENSP00000352678786 (aa)-Q8IYB8
Gene Model
Click here to download ENSG00000156502's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000156502Platelet Function Tests3.7200000E-006-
ENSG00000156502Cytokines1E-922610502
ENSG00000156502Vaccine Potency1E-922610502
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000156502's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000156502SUPV3L19072.254ENSAPOG00000012040supv3l110067.298Acanthochromis_polyacanthus
ENSG00000156502SUPV3L110095.349ENSAMEG00000017957SUPV3L110089.620Ailuropoda_melanoleuca
ENSG00000156502SUPV3L18172.812ENSACIG00000006824supv3l110071.818Amphilophus_citrinellus
ENSG00000156502SUPV3L17984.884ENSAOCG00000022898supv3l19570.227Amphiprion_ocellaris
ENSG00000156502SUPV3L17984.884ENSAPEG00000006805supv3l19570.227Amphiprion_percula
ENSG00000156502SUPV3L19966.247ENSATEG00000021682supv3l19269.494Anabas_testudineus
ENSG00000156502SUPV3L18871.049ENSAPLG00000012258SUPV3L110071.049Anas_platyrhynchos
ENSG00000156502SUPV3L19173.333ENSACAG00000009685SUPV3L19970.101Anolis_carolinensis
ENSG00000156502SUPV3L110094.155ENSANAG00000022155SUPV3L110094.155Aotus_nancymaae
ENSG00000156502SUPV3L19073.277ENSACLG00000008303supv3l19272.207Astatotilapia_calliptera
ENSG00000156502SUPV3L18283.626ENSAMXG00000009658supv3l19769.754Astyanax_mexicanus
ENSG00000156502SUPV3L16265.432WBGene00007444C08F8.29945.119Caenorhabditis_elegans
ENSG00000156502SUPV3L110093.393ENSCJAG00000012937SUPV3L110093.393Callithrix_jacchus
ENSG00000156502SUPV3L110090.482ENSCAFG00000013839SUPV3L19390.609Canis_familiaris
ENSG00000156502SUPV3L18391.908ENSCAFG00020025942SUPV3L110091.908Canis_lupus_dingo
ENSG00000156502SUPV3L110089.962ENSCHIG00000000074SUPV3L110089.962Capra_hircus
ENSG00000156502SUPV3L110090.863ENSTSYG00000012845SUPV3L110090.863Carlito_syrichta
ENSG00000156502SUPV3L110088.310ENSCPOG00000010044SUPV3L110088.310Cavia_porcellus
ENSG00000156502SUPV3L110090.470ENSCCAG00000033975SUPV3L110090.470Cebus_capucinus
ENSG00000156502SUPV3L110098.256ENSCATG00000030043SUPV3L110090.343Cercocebus_atys
ENSG00000156502SUPV3L110088.945ENSCLAG00000010181SUPV3L110088.945Chinchilla_lanigera
ENSG00000156502SUPV3L110097.078ENSCSAG00000007811SUPV3L110097.078Chlorocebus_sabaeus
ENSG00000156502SUPV3L110083.333ENSCHOG00000008008SUPV3L19987.933Choloepus_hoffmanni
ENSG00000156502SUPV3L18673.167ENSCPBG00000000660SUPV3L19874.328Chrysemys_picta_bellii
ENSG00000156502SUPV3L16955.249ENSCING00000008091-8944.178Ciona_intestinalis
ENSG00000156502SUPV3L110097.459ENSCANG00000036962SUPV3L110097.459Colobus_angolensis_palliatus
ENSG00000156502SUPV3L110093.605ENSCGRG00001020865Supv3l110086.531Cricetulus_griseus_chok1gshd
ENSG00000156502SUPV3L110093.605ENSCGRG00000014899Supv3l110086.531Cricetulus_griseus_crigri
ENSG00000156502SUPV3L19566.710ENSCSEG00000014061supv3l19268.349Cynoglossus_semilaevis
ENSG00000156502SUPV3L19272.122ENSCVAG00000009948supv3l19371.683Cyprinodon_variegatus
ENSG00000156502SUPV3L19271.468ENSDARG00000077728supv3l19271.468Danio_rerio
ENSG00000156502SUPV3L110089.327ENSDNOG00000004855SUPV3L110089.327Dasypus_novemcinctus
ENSG00000156502SUPV3L110095.349ENSDORG00000016650Supv3l110087.039Dipodomys_ordii
ENSG00000156502SUPV3L19159.384FBgn0037232Suv39159.384Drosophila_melanogaster
ENSG00000156502SUPV3L19065.084ENSEBUG00000010807supv3l18365.954Eptatretus_burgeri
ENSG00000156502SUPV3L110091.105ENSEASG00005015607SUPV3L110090.978Equus_asinus_asinus
ENSG00000156502SUPV3L110090.978ENSECAG00000016297SUPV3L110090.851Equus_caballus
ENSG00000156502SUPV3L110077.320ENSEEUG00000007717SUPV3L110071.574Erinaceus_europaeus
ENSG00000156502SUPV3L18585.465ENSELUG00000018676supv3l19272.414Esox_lucius
ENSG00000156502SUPV3L110090.368ENSFCAG00000004921SUPV3L110090.494Felis_catus
ENSG00000156502SUPV3L18871.130ENSFALG00000013094SUPV3L19971.130Ficedula_albicollis
ENSG00000156502SUPV3L110086.404ENSFDAG00000011147SUPV3L110086.404Fukomys_damarensis
ENSG00000156502SUPV3L19270.588ENSFHEG00000011288supv3l19270.588Fundulus_heteroclitus
ENSG00000156502SUPV3L17975.884ENSGMOG00000012387supv3l19375.879Gadus_morhua
ENSG00000156502SUPV3L17987.209ENSGALG00000004197SUPV3L19470.400Gallus_gallus
ENSG00000156502SUPV3L18176.682ENSGAFG00000003909supv3l19074.886Gambusia_affinis
ENSG00000156502SUPV3L19170.851ENSGACG00000016077supv3l19470.096Gasterosteus_aculeatus
ENSG00000156502SUPV3L19789.535ENSGAGG00000015564SUPV3L110073.938Gopherus_agassizii
ENSG00000156502SUPV3L110099.873ENSGGOG00000005325SUPV3L110099.873Gorilla_gorilla
ENSG00000156502SUPV3L19073.136ENSHBUG00000017736supv3l19272.071Haplochromis_burtoni
ENSG00000156502SUPV3L110087.310ENSHGLG00000014418SUPV3L110087.310Heterocephalus_glaber_female
ENSG00000156502SUPV3L110087.310ENSHGLG00100005752SUPV3L110087.310Heterocephalus_glaber_male
ENSG00000156502SUPV3L17984.302ENSHCOG00000013962supv3l19269.986Hippocampus_comes
ENSG00000156502SUPV3L19273.204ENSIPUG00000015765supv3l19373.204Ictalurus_punctatus
ENSG00000156502SUPV3L110095.930ENSSTOG00000000503SUPV3L19989.962Ictidomys_tridecemlineatus
ENSG00000156502SUPV3L19993.023ENSJJAG00000012919Supv3l110083.375Jaculus_jaculus
ENSG00000156502SUPV3L19170.350ENSKMAG00000020644supv3l19369.918Kryptolebias_marmoratus
ENSG00000156502SUPV3L110082.558ENSLBEG00000009091supv3l19966.834Labrus_bergylta
ENSG00000156502SUPV3L18864.460ENSLACG00000008028SUPV3L110064.460Latimeria_chalumnae
ENSG00000156502SUPV3L19270.643ENSLOCG00000009159supv3l19270.916Lepisosteus_oculatus
ENSG00000156502SUPV3L110089.835ENSLAFG00000000889SUPV3L110089.835Loxodonta_africana
ENSG00000156502SUPV3L110097.459ENSMFAG00000003566SUPV3L110097.459Macaca_fascicularis
ENSG00000156502SUPV3L110097.332ENSMNEG00000016010SUPV3L110097.332Macaca_nemestrina
ENSG00000156502SUPV3L110096.823ENSMLEG00000028551SUPV3L110096.823Mandrillus_leucophaeus
ENSG00000156502SUPV3L18983.721ENSMAMG00000020254supv3l19271.332Mastacembelus_armatus
ENSG00000156502SUPV3L19072.996ENSMZEG00005011568supv3l19271.935Maylandia_zebra
ENSG00000156502SUPV3L18870.124ENSMGAG00000004251SUPV3L19970.124Meleagris_gallopavo
ENSG00000156502SUPV3L110087.166ENSMAUG00000005895Supv3l110086.531Mesocricetus_auratus
ENSG00000156502SUPV3L110090.851ENSMICG00000014955SUPV3L110090.851Microcebus_murinus
ENSG00000156502SUPV3L110087.326ENSMOCG00000013772Supv3l110087.452Microtus_ochrogaster
ENSG00000156502SUPV3L18572.917ENSMMOG00000015898supv3l19971.102Mola_mola
ENSG00000156502SUPV3L19882.474ENSMODG00000010700SUPV3L19878.400Monodelphis_domestica
ENSG00000156502SUPV3L19263.536ENSMALG00000005447supv3l19562.838Monopterus_albus
ENSG00000156502SUPV3L110087.166MGP_CAROLIEiJ_G0015383Supv3l110087.039Mus_caroli
ENSG00000156502SUPV3L110087.039ENSMUSG00000020079Supv3l110086.912Mus_musculus
ENSG00000156502SUPV3L110085.859MGP_PahariEiJ_G0030799Supv3l110077.255Mus_pahari
ENSG00000156502SUPV3L110087.675MGP_SPRETEiJ_G0016195Supv3l110087.675Mus_spretus
ENSG00000156502SUPV3L110091.667ENSMPUG00000004499SUPV3L110089.295Mustela_putorius_furo
ENSG00000156502SUPV3L16180.167ENSMLUG00000024349-10080.167Myotis_lucifugus
ENSG00000156502SUPV3L110089.581ENSMLUG00000012664-10089.581Myotis_lucifugus
ENSG00000156502SUPV3L110086.456ENSNGAG00000001563Supv3l110086.709Nannospalax_galili
ENSG00000156502SUPV3L19898.309ENSNLEG00000011521SUPV3L19998.309Nomascus_leucogenys
ENSG00000156502SUPV3L19882.828ENSMEUG00000009010SUPV3L19978.846Notamacropus_eugenii
ENSG00000156502SUPV3L110093.605ENSOPRG00000001705SUPV3L110080.559Ochotona_princeps
ENSG00000156502SUPV3L110087.294ENSODEG00000014392SUPV3L110087.294Octodon_degus
ENSG00000156502SUPV3L18878.286ENSOANG00000008886SUPV3L19978.286Ornithorhynchus_anatinus
ENSG00000156502SUPV3L110090.470ENSOCUG00000004933SUPV3L110090.470Oryctolagus_cuniculus
ENSG00000156502SUPV3L19271.724ENSORLG00000010240supv3l19771.777Oryzias_latipes
ENSG00000156502SUPV3L19271.586ENSORLG00020004189supv3l19371.311Oryzias_latipes_hni
ENSG00000156502SUPV3L18182.558ENSORLG00015002310supv3l19271.253Oryzias_latipes_hsok
ENSG00000156502SUPV3L19469.179ENSOMEG00000004719supv3l19370.492Oryzias_melastigma
ENSG00000156502SUPV3L110089.454ENSOGAG00000005905SUPV3L110089.454Otolemur_garnettii
ENSG00000156502SUPV3L18390.992ENSOARG00000005389SUPV3L110090.992Ovis_aries
ENSG00000156502SUPV3L110099.746ENSPPAG00000034596SUPV3L110099.746Pan_paniscus
ENSG00000156502SUPV3L110090.482ENSPPRG00000004832SUPV3L110090.609Panthera_pardus
ENSG00000156502SUPV3L110090.228ENSPTIG00000004317SUPV3L110090.355Panthera_tigris_altaica
ENSG00000156502SUPV3L110099.746ENSPTRG00000002568SUPV3L110099.746Pan_troglodytes
ENSG00000156502SUPV3L110095.699ENSPANG00000022168SUPV3L110092.122Papio_anubis
ENSG00000156502SUPV3L18972.350ENSPKIG00000014484supv3l19270.759Paramormyrops_kingsleyae
ENSG00000156502SUPV3L19789.535ENSPSIG00000017997SUPV3L110074.644Pelodiscus_sinensis
ENSG00000156502SUPV3L19068.220ENSPMGG00000001235supv3l19967.308Periophthalmus_magnuspinnatus
ENSG00000156502SUPV3L110086.709ENSPEMG00000016292-10087.089Peromyscus_maniculatus_bairdii
ENSG00000156502SUPV3L110083.505ENSPCIG00000015440SUPV3L19976.730Phascolarctos_cinereus
ENSG00000156502SUPV3L19272.238ENSPFOG00000015968supv3l18873.609Poecilia_formosa
ENSG00000156502SUPV3L18784.302ENSPLAG00000012582supv3l19271.175Poecilia_latipinna
ENSG00000156502SUPV3L18777.157ENSPMEG00000015003supv3l18873.324Poecilia_mexicana
ENSG00000156502SUPV3L19477.157ENSPREG00000014702supv3l19769.816Poecilia_reticulata
ENSG00000156502SUPV3L110098.982ENSPPYG00000002385SUPV3L110098.982Pongo_abelii
ENSG00000156502SUPV3L19686.598ENSPCOG00000021435SUPV3L19685.714Propithecus_coquereli
ENSG00000156502SUPV3L110084.264ENSPVAG00000009536SUPV3L19189.744Pteropus_vampyrus
ENSG00000156502SUPV3L19271.819ENSPNYG00000015894supv3l19271.819Pundamilia_nyererei
ENSG00000156502SUPV3L19571.580ENSPNAG00000018698supv3l19970.596Pygocentrus_nattereri
ENSG00000156502SUPV3L19784.646ENSRNOG00000000392Supv3l19988.506Rattus_norvegicus
ENSG00000156502SUPV3L110097.205ENSRROG00000000787SUPV3L110097.205Rhinopithecus_roxellana
ENSG00000156502SUPV3L16846.448YPL029WSUV37435.501Saccharomyces_cerevisiae
ENSG00000156502SUPV3L110093.647ENSSBOG00000033775SUPV3L110093.647Saimiri_boliviensis_boliviensis
ENSG00000156502SUPV3L110089.535ENSSHAG00000000910SUPV3L18776.738Sarcophilus_harrisii
ENSG00000156502SUPV3L18872.845ENSSFOG00015014751supv3l19972.845Scleropages_formosus
ENSG00000156502SUPV3L19269.284ENSSMAG00000004035supv3l19369.284Scophthalmus_maximus
ENSG00000156502SUPV3L19668.840ENSSDUG00000021594supv3l19270.902Seriola_dumerili
ENSG00000156502SUPV3L110076.000ENSSLDG00000025671supv3l19271.038Seriola_lalandi_dorsalis
ENSG00000156502SUPV3L19371.561ENSSPUG00000004216SUPV3L19472.102Sphenodon_punctatus
ENSG00000156502SUPV3L19071.610ENSSPAG00000012762supv3l19270.937Stegastes_partitus
ENSG00000156502SUPV3L18392.214ENSSSCG00000010251SUPV3L110092.214Sus_scrofa
ENSG00000156502SUPV3L17780.165ENSTGUG00000003907SUPV3L110080.165Taeniopygia_guttata
ENSG00000156502SUPV3L110085.465ENSTRUG00000001882supv3l110067.762Takifugu_rubripes
ENSG00000156502SUPV3L110076.884ENSTNIG00000013794supv3l110066.252Tetraodon_nigroviridis
ENSG00000156502SUPV3L18581.913ENSTBEG00000015538SUPV3L110081.913Tupaia_belangeri
ENSG00000156502SUPV3L110095.349ENSUAMG00000018007SUPV3L110089.394Ursus_americanus
ENSG00000156502SUPV3L18391.020ENSUMAG00000007773SUPV3L110091.020Ursus_maritimus
ENSG00000156502SUPV3L110090.127ENSVVUG00000020506SUPV3L19390.127Vulpes_vulpes
ENSG00000156502SUPV3L19270.068ENSXETG00000008852supv3l19970.082Xenopus_tropicalis
ENSG00000156502SUPV3L19370.963ENSXCOG00000012026supv3l19271.644Xiphophorus_couchianus
ENSG00000156502SUPV3L19270.959ENSXMAG00000014547supv3l19571.507Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000958mitochondrial mRNA catabolic process19864255.IMPProcess
GO:0000962positive regulation of mitochondrial RNA catabolic process19509288.IDAProcess
GO:0000962positive regulation of mitochondrial RNA catabolic process19864255.IMPProcess
GO:0000965mitochondrial RNA 3'-end processing21873635.IBAProcess
GO:0000965mitochondrial RNA 3'-end processing19864255.IMPProcess
GO:0003677DNA binding12466530.IMPFunction
GO:0003678DNA helicase activity12466530.IMPFunction
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003725double-stranded RNA binding19509288.IDAFunction
GO:0004004ATP-dependent RNA helicase activity21873635.IBAFunction
GO:0004004ATP-dependent RNA helicase activity19509288.IDAFunction
GO:0004386helicase activity9925937.TASFunction
GO:0005515protein binding17961633.25416956.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus17352692.IDAComponent
GO:0005739mitochondrion17352692.19864255.IDAComponent
GO:0005759mitochondrial matrix12466530.IDAComponent
GO:0006310DNA recombination17961633.IMPProcess
GO:0006401RNA catabolic process21873635.IBAProcess
GO:0006401RNA catabolic process18678873.IMPProcess
GO:0030307positive regulation of cell growth19864255.IMPProcess
GO:0032508DNA duplex unwinding12466530.IMPProcess
GO:00344583'-5' RNA helicase activity19509288.IDAFunction
GO:0035945mitochondrial ncRNA surveillance19864255.IMPProcess
GO:0035946mitochondrial mRNA surveillance19864255.IMPProcess
GO:0042645mitochondrial nucleoid18063578.IDAComponent
GO:0042803protein homodimerization activity19509288.IPIFunction
GO:0043066negative regulation of apoptotic process17352692.IMPProcess
GO:0045025mitochondrial degradosome21873635.IBAComponent
GO:0045025mitochondrial degradosome19509288.IDAComponent
GO:0070584mitochondrion morphogenesis19864255.IMPProcess
GO:0070827chromatin maintenance17352692.IMPProcess
GO:2000827mitochondrial RNA surveillance19864255.IMPProcess

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