EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000158545 (Gene tree)
Gene ID
124245
Gene Symbol
ZC3H18
Alias
NHN1
Full Name
zinc finger CCCH-type containing 18
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
61,588 bases
Position
chr16:88,570,379-88,631,966
Accession
25091
RBP type
canonical RBP
Summary
(Zinc Finger CCCH-Type Containing 18) is a Protein Coding gene. An important paralog of this gene is PPP1R10.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000455260zf-CCCHPF00642.240.0002311
ENSP00000455083zf-CCCHPF00642.240.0002911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000566317ZC3H18-207628--- (aa)--
ENST00000566496ZC3H18-2081949--- (aa)--
ENST00000566660ZC3H18-209583--- (aa)--
ENST00000563382ZC3H18-203541--- (aa)--
ENST00000564161ZC3H18-2044654--- (aa)--
ENST00000301011ZC3H18-2013729XM_011522865ENSP00000301011953 (aa)XP_011521167Q86VM9
ENST00000568072ZC3H18-211444--- (aa)--
ENST00000565583ZC3H18-2061068-ENSP00000456241196 (aa)-H3BRH3
ENST00000564341ZC3H18-205387-ENSP0000045633475 (aa)-H3BRN6
ENST00000569435ZC3H18-212694-ENSP00000455260197 (aa)-H3BPD0
ENST00000567085ZC3H18-210712-ENSP00000455083238 (aa)-H3BP01
ENST00000452588ZC3H18-2023211XM_011522863ENSP00000416951977 (aa)XP_011521165E7ERS3
Gene Model
Click here to download ENSG00000158545's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000158545rs1174634961688604051?Hair color30595370EFO_0007822
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000158545's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000158545ZC3H188069.231ENSLOCG00000002443zc3h185553.712Lepisosteus_oculatus
ENSG00000158545ZC3H189696.154ENSPTIG00000007787ZC3H186494.340Panthera_tigris_altaica
ENSG00000158545ZC3H187980.392ENSPKIG00000003664zc3h187358.015Paramormyrops_kingsleyae
ENSG00000158545ZC3H186367.785ENSPMGG00000010466-8246.799Periophthalmus_magnuspinnatus
ENSG00000158545ZC3H188680.392ENSSFOG00015022688zc3h185851.201Scleropages_formosus
ENSG00000158545ZC3H189594.286ENSSPUG00000007367-9473.253Sphenodon_punctatus
ENSG00000158545ZC3H189492.381ENSTGUG00000007717ZC3H189273.250Taeniopygia_guttata
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding21044950.23793891.27871484.IPIFunction
GO:0016607nuclear speck-IDAComponent
GO:0032991protein-containing complex23793891.IDAComponent
GO:0046872metal ion binding-IEAFunction

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