EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000159082 (Gene tree)
Gene ID
8867
Gene Symbol
SYNJ1
Alias
INPP5G|PARK20
Full Name
synaptojanin 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
99,290 bases
Position
chr21:32,628,759-32,728,048
Accession
11503
RBP type
canonical RBP
Summary
This gene encodes a phosphoinositide phosphatase that regulates levels of membrane phosphatidylinositol-4,5-bisphosphate. As such, expression of this enzyme may affect synaptic transmission and membrane trafficking. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000371931Exo_endo_phosPF03372.232.8e-1411
ENSP00000349903Exo_endo_phosPF03372.233e-1411
ENSP00000371939Exo_endo_phosPF03372.233.2e-1411
ENSP00000487560Exo_endo_phosPF03372.234e-1411
ENSP00000409667Exo_endo_phosPF03372.234.4e-1411
ENSP00000413649Exo_endo_phosPF03372.237.8e-0711
ENSP00000371931DUF1866PF08952.111.5e-5911
ENSP00000349903DUF1866PF08952.111.5e-5911
ENSP00000487560DUF1866PF08952.111.6e-5911
ENSP00000371939DUF1866PF08952.111.6e-5911
ENSP00000409667DUF1866PF08952.111.7e-5911
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000467445SYNJ1-210977--- (aa)--
ENST00000438952SYNJ1-2073604-ENSP00000388869187 (aa)-H7BZC2
ENST00000433931SYNJ1-2064852XM_017028495ENSP000004096671612 (aa)XP_016883984J3KQV8
ENST00000464778SYNJ1-209578--- (aa)--
ENST00000456084SYNJ1-208583-ENSP00000412707178 (aa)-C9J1Z6
ENST00000630077SYNJ1-2116898XM_017028496ENSP000004875601526 (aa)XP_016883985A0A0D9SGJ6
ENST00000429236SYNJ1-2052212-ENSP00000413649695 (aa)-C9JW66
ENST00000382491SYNJ1-2026958XM_017028504ENSP000003719311264 (aa)XP_016883993J3KPK1
ENST00000357345SYNJ1-2017059XM_017028494ENSP000003499031295 (aa)XP_016883983O43426
ENST00000418301SYNJ1-204422-ENSP00000387868131 (aa)-H7BZ56
ENST00000382499SYNJ1-2037094-ENSP000003719391350 (aa)-C9JFZ1
Gene Model
Click here to download ENSG00000159082's gene model file
Pathways
Pathway IDPathway NameSource
hsa00562Inositol phosphate metabolismKEGG
hsa01100Metabolic pathwaysKEGG
hsa04070Phosphatidylinositol signaling systemKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000159082Alzheimer Disease3E-926830138
ENSG00000159082Age of Onset3E-926830138
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000159082rs1479912902132716160TAlzheimer disease and age of onset26830138unit decrease5.943EFO_0000249|EFO_0004847
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000159082's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000159082SYNJ110083.931ENSAPOG00000002809synj19869.668Acanthochromis_polyacanthus
ENSG00000159082SYNJ110099.438ENSAMEG00000015028SYNJ110093.432Ailuropoda_melanoleuca
ENSG00000159082SYNJ110082.022ENSACIG00000008857synj19568.866Amphilophus_citrinellus
ENSG00000159082SYNJ110083.644ENSAOCG00000009835synj110068.198Amphiprion_ocellaris
ENSG00000159082SYNJ110083.644ENSAPEG00000021010synj18766.735Amphiprion_percula
ENSG00000159082SYNJ110082.783ENSATEG00000002306synj18766.190Anabas_testudineus
ENSG00000159082SYNJ110092.068ENSAPLG00000011832SYNJ110079.195Anas_platyrhynchos
ENSG00000159082SYNJ110091.038ENSACAG00000003006-10083.954Anolis_carolinensis
ENSG00000159082SYNJ1100100.000ENSANAG00000027325SYNJ110098.997Aotus_nancymaae
ENSG00000159082SYNJ110082.783ENSACLG00000002255synj110069.350Astatotilapia_calliptera
ENSG00000159082SYNJ110083.381ENSAMXG00000008208synj19563.514Astyanax_mexicanus
ENSG00000159082SYNJ110098.129ENSBTAG00000003063SYNJ110093.707Bos_taurus
ENSG00000159082SYNJ1100100.000ENSCJAG00000009187SYNJ110098.997Callithrix_jacchus
ENSG00000159082SYNJ110098.876ENSCAFG00000009041SYNJ19994.687Canis_familiaris
ENSG00000159082SYNJ110099.137ENSCAFG00020025776SYNJ110092.736Canis_lupus_dingo
ENSG00000159082SYNJ110098.129ENSCHIG00000005095SYNJ110090.451Capra_hircus
ENSG00000159082SYNJ110099.438ENSTSYG00000014541SYNJ110096.757Carlito_syrichta
ENSG00000159082SYNJ18988.357ENSCAPG00000014483SYNJ19981.363Cavia_aperea
ENSG00000159082SYNJ110098.273ENSCPOG00000012182SYNJ110094.737Cavia_porcellus
ENSG00000159082SYNJ1100100.000ENSCCAG00000020825SYNJ110098.843Cebus_capucinus
ENSG00000159082SYNJ1100100.000ENSCATG00000033891SYNJ110099.209Cercocebus_atys
ENSG00000159082SYNJ19998.413ENSCLAG00000009796SYNJ110098.413Chinchilla_lanigera
ENSG00000159082SYNJ1100100.000ENSCSAG00000009654SYNJ110099.161Chlorocebus_sabaeus
ENSG00000159082SYNJ183100.000ENSCHOG00000012390SYNJ18792.508Choloepus_hoffmanni
ENSG00000159082SYNJ110093.237ENSCPBG00000006402SYNJ110086.552Chrysemys_picta_bellii
ENSG00000159082SYNJ1100100.000ENSCANG00000031359SYNJ110099.305Colobus_angolensis_palliatus
ENSG00000159082SYNJ110096.835ENSCGRG00001010861Synj110093.745Cricetulus_griseus_chok1gshd
ENSG00000159082SYNJ110096.067ENSCGRG00000015749Synj110096.825Cricetulus_griseus_crigri
ENSG00000159082SYNJ110081.560ENSCSEG00000019614synj19971.172Cynoglossus_semilaevis
ENSG00000159082SYNJ110080.337ENSCVAG00000019250synj110066.594Cyprinodon_variegatus
ENSG00000159082SYNJ110082.270ENSDARG00000025011synj110071.589Danio_rerio
ENSG00000159082SYNJ110097.753ENSDNOG00000010732SYNJ19987.036Dasypus_novemcinctus
ENSG00000159082SYNJ19998.124ENSDORG00000014735-10098.124Dipodomys_ordii
ENSG00000159082SYNJ18694.872ENSETEG00000018674SYNJ17995.652Echinops_telfairi
ENSG00000159082SYNJ110098.849ENSEASG00005006287SYNJ19895.807Equus_asinus_asinus
ENSG00000159082SYNJ110098.705ENSECAG00000004829SYNJ110095.332Equus_caballus
ENSG00000159082SYNJ183100.000ENSEEUG00000005150SYNJ19589.681Erinaceus_europaeus
ENSG00000159082SYNJ110082.209ENSELUG00000009731synj19067.713Esox_lucius
ENSG00000159082SYNJ110098.993ENSFCAG00000012498SYNJ110095.378Felis_catus
ENSG00000159082SYNJ17476.711ENSFALG00000004680SYNJ110071.577Ficedula_albicollis
ENSG00000159082SYNJ110097.753ENSFDAG00000016818SYNJ110098.413Fukomys_damarensis
ENSG00000159082SYNJ110081.844ENSFHEG00000017689synj18964.040Fundulus_heteroclitus
ENSG00000159082SYNJ110078.652ENSGMOG00000014852synj17773.013Gadus_morhua
ENSG00000159082SYNJ110093.381ENSGALG00000034317SYNJ110079.922Gallus_gallus
ENSG00000159082SYNJ110082.927ENSGAFG00000019466synj18965.959Gambusia_affinis
ENSG00000159082SYNJ110082.022ENSGACG00000020575synj19365.800Gasterosteus_aculeatus
ENSG00000159082SYNJ110093.525ENSGAGG00000022523SYNJ110085.435Gopherus_agassizii
ENSG00000159082SYNJ1100100.000ENSGGOG00000015945SYNJ110099.525Gorilla_gorilla
ENSG00000159082SYNJ110081.418ENSHBUG00000007774synj110069.350Haplochromis_burtoni
ENSG00000159082SYNJ19998.413ENSHGLG00000006420SYNJ110098.413Heterocephalus_glaber_female
ENSG00000159082SYNJ19998.413ENSHGLG00100012591SYNJ110098.413Heterocephalus_glaber_male
ENSG00000159082SYNJ110082.022ENSHCOG00000012774synj19666.143Hippocampus_comes
ENSG00000159082SYNJ110083.214ENSIPUG00000010691SYNJ19662.759Ictalurus_punctatus
ENSG00000159082SYNJ110098.273ENSSTOG00000015806SYNJ110096.415Ictidomys_tridecemlineatus
ENSG00000159082SYNJ19888.066ENSJJAG00000020168Synj110085.660Jaculus_jaculus
ENSG00000159082SYNJ110082.640ENSKMAG00000004221synj19473.303Kryptolebias_marmoratus
ENSG00000159082SYNJ110081.871ENSLBEG00000015081synj19567.331Labrus_bergylta
ENSG00000159082SYNJ110087.640ENSLACG00000005928SYNJ19869.736Latimeria_chalumnae
ENSG00000159082SYNJ110084.681ENSLOCG00000009230synj110070.125Lepisosteus_oculatus
ENSG00000159082SYNJ110097.191ENSLAFG00000011806SYNJ19990.076Loxodonta_africana
ENSG00000159082SYNJ19898.419ENSMFAG00000018883SYNJ19998.439Macaca_fascicularis
ENSG00000159082SYNJ1100100.000ENSMMUG00000004624SYNJ110099.011Macaca_mulatta
ENSG00000159082SYNJ1100100.000ENSMNEG00000040077SYNJ110098.102Macaca_nemestrina
ENSG00000159082SYNJ1100100.000ENSMLEG00000037029SYNJ110099.305Mandrillus_leucophaeus
ENSG00000159082SYNJ110083.357ENSMAMG00000013404synj18965.707Mastacembelus_armatus
ENSG00000159082SYNJ110082.783ENSMZEG00005024358synj110069.888Maylandia_zebra
ENSG00000159082SYNJ110089.986ENSMGAG00000014522SYNJ110079.397Meleagris_gallopavo
ENSG00000159082SYNJ19996.537ENSMAUG00000009743Synj110096.537Mesocricetus_auratus
ENSG00000159082SYNJ1100100.000ENSMICG00000034953SYNJ110097.389Microcebus_murinus
ENSG00000159082SYNJ110082.037ENSMMOG00000010203synj19967.345Mola_mola
ENSG00000159082SYNJ110086.913ENSMODG00000021073SYNJ110080.851Monodelphis_domestica
ENSG00000159082SYNJ110083.214ENSMALG00000014015synj18865.608Monopterus_albus
ENSG00000159082SYNJ19997.403MGP_CAROLIEiJ_G0020951Synj110097.403Mus_caroli
ENSG00000159082SYNJ110097.191ENSMUSG00000022973Synj110097.691Mus_musculus
ENSG00000159082SYNJ19997.691MGP_PahariEiJ_G0016656Synj110097.691Mus_pahari
ENSG00000159082SYNJ110097.191MGP_SPRETEiJ_G0021857Synj110097.691Mus_spretus
ENSG00000159082SYNJ110098.876ENSMPUG00000001153SYNJ110091.783Mustela_putorius_furo
ENSG00000159082SYNJ19495.115ENSMLUG00000026584-10094.963Myotis_lucifugus
ENSG00000159082SYNJ19966.667ENSMLUG00000005764-10076.063Myotis_lucifugus
ENSG00000159082SYNJ19997.547ENSNGAG00000000453Synj110097.547Nannospalax_galili
ENSG00000159082SYNJ110082.927ENSNBRG00000011936synj19560.582Neolamprologus_brichardi
ENSG00000159082SYNJ19998.473ENSNLEG00000003734SYNJ110098.737Nomascus_leucogenys
ENSG00000159082SYNJ18980.342ENSMEUG00000004158-7877.533Notamacropus_eugenii
ENSG00000159082SYNJ110096.067ENSOPRG00000013602SYNJ19393.659Ochotona_princeps
ENSG00000159082SYNJ19998.124ENSODEG00000002409-10098.124Octodon_degus
ENSG00000159082SYNJ110081.844ENSONIG00000004667synj110067.733Oreochromis_niloticus
ENSG00000159082SYNJ19492.136ENSOANG00000006929SYNJ19778.402Ornithorhynchus_anatinus
ENSG00000159082SYNJ110097.753ENSOCUG00000001420SYNJ110088.403Oryctolagus_cuniculus
ENSG00000159082SYNJ110081.779ENSORLG00000004320synj110068.672Oryzias_latipes
ENSG00000159082SYNJ110080.337ENSORLG00020011994synj19766.440Oryzias_latipes_hni
ENSG00000159082SYNJ110081.923ENSORLG00015018077synj19561.529Oryzias_latipes_hsok
ENSG00000159082SYNJ110082.496ENSOMEG00000014322synj19966.989Oryzias_melastigma
ENSG00000159082SYNJ110098.315ENSOGAG00000006010SYNJ110090.388Otolemur_garnettii
ENSG00000159082SYNJ110097.191ENSOARG00000013414SYNJ110088.561Ovis_aries
ENSG00000159082SYNJ1100100.000ENSPPAG00000026784SYNJ110099.926Pan_paniscus
ENSG00000159082SYNJ110099.137ENSPPRG00000023469SYNJ110095.378Panthera_pardus
ENSG00000159082SYNJ110098.993ENSPTIG00000007930SYNJ110095.300Panthera_tigris_altaica
ENSG00000159082SYNJ1100100.000ENSPTRG00000023787SYNJ110099.923Pan_troglodytes
ENSG00000159082SYNJ1100100.000ENSPTRG00000048135-10099.921Pan_troglodytes
ENSG00000159082SYNJ1100100.000ENSPANG00000022531SYNJ110099.314Papio_anubis
ENSG00000159082SYNJ110084.505ENSPKIG00000022603synj19576.975Paramormyrops_kingsleyae
ENSG00000159082SYNJ110082.783ENSPMGG00000016831synj19375.453Periophthalmus_magnuspinnatus
ENSG00000159082SYNJ110096.629ENSPEMG00000018767Synj110096.970Peromyscus_maniculatus_bairdii
ENSG00000159082SYNJ110064.366ENSPMAG00000002887synj19653.569Petromyzon_marinus
ENSG00000159082SYNJ110093.957ENSPCIG00000016372SYNJ110087.197Phascolarctos_cinereus
ENSG00000159082SYNJ110082.022ENSPFOG00000016886synj110067.078Poecilia_formosa
ENSG00000159082SYNJ110082.783ENSPLAG00000017559synj110065.385Poecilia_latipinna
ENSG00000159082SYNJ110082.353ENSPMEG00000007643synj18965.646Poecilia_mexicana
ENSG00000159082SYNJ110082.927ENSPREG00000012412synj19967.713Poecilia_reticulata
ENSG00000159082SYNJ1100100.000ENSPPYG00000011365SYNJ19898.908Pongo_abelii
ENSG00000159082SYNJ18994.286ENSPCAG00000009906SYNJ18994.286Procavia_capensis
ENSG00000159082SYNJ110098.876ENSPCOG00000024841SYNJ19991.874Propithecus_coquereli
ENSG00000159082SYNJ110097.753ENSPVAG00000000892SYNJ110087.492Pteropus_vampyrus
ENSG00000159082SYNJ110082.783ENSPNYG00000022989synj110067.336Pundamilia_nyererei
ENSG00000159082SYNJ110083.070ENSPNAG00000021119synj19276.455Pygocentrus_nattereri
ENSG00000159082SYNJ110097.191ENSRNOG00000002051Synj110093.900Rattus_norvegicus
ENSG00000159082SYNJ110099.712ENSRBIG00000034477SYNJ110099.151Rhinopithecus_bieti
ENSG00000159082SYNJ1100100.000ENSRROG00000039256SYNJ110099.305Rhinopithecus_roxellana
ENSG00000159082SYNJ1100100.000ENSSBOG00000021001SYNJ110098.765Saimiri_boliviensis_boliviensis
ENSG00000159082SYNJ110093.525ENSSHAG00000008538SYNJ19978.715Sarcophilus_harrisii
ENSG00000159082SYNJ110083.501ENSSFOG00015006095synj19565.217Scleropages_formosus
ENSG00000159082SYNJ110082.783ENSSMAG00000018066synj19569.296Scophthalmus_maximus
ENSG00000159082SYNJ110083.214ENSSDUG00000013058synj18866.394Seriola_dumerili
ENSG00000159082SYNJ110082.783ENSSLDG00000021406synj19671.173Seriola_lalandi_dorsalis
ENSG00000159082SYNJ19976.923ENSSARG00000009490SYNJ17597.368Sorex_araneus
ENSG00000159082SYNJ110093.957ENSSPUG00000012552SYNJ110078.585Sphenodon_punctatus
ENSG00000159082SYNJ110083.501ENSSPAG00000017029synj19566.992Stegastes_partitus
ENSG00000159082SYNJ18983.333ENSSPAG00000006812SYNJ18765.404Stegastes_partitus
ENSG00000159082SYNJ110098.849ENSSSCG00000012035SYNJ110094.091Sus_scrofa
ENSG00000159082SYNJ110091.243ENSTGUG00000013445SYNJ110077.925Taeniopygia_guttata
ENSG00000159082SYNJ110082.584ENSTRUG00000006907synj19768.113Takifugu_rubripes
ENSG00000159082SYNJ110082.022ENSTNIG00000009940synj110065.598Tetraodon_nigroviridis
ENSG00000159082SYNJ110099.438ENSTBEG00000016298SYNJ19287.549Tupaia_belangeri
ENSG00000159082SYNJ110097.191ENSTTRG00000002222SYNJ110082.323Tursiops_truncatus
ENSG00000159082SYNJ110099.438ENSUAMG00000018606SYNJ19998.013Ursus_americanus
ENSG00000159082SYNJ110099.438ENSUMAG00000018419SYNJ19998.013Ursus_maritimus
ENSG00000159082SYNJ187100.000ENSVPAG00000001241SYNJ187100.000Vicugna_pacos
ENSG00000159082SYNJ110099.438ENSVVUG00000023125SYNJ110095.576Vulpes_vulpes
ENSG00000159082SYNJ110085.028ENSXETG00000009899synj110068.727Xenopus_tropicalis
ENSG00000159082SYNJ110081.702ENSXCOG00000011896synj19968.130Xiphophorus_couchianus
ENSG00000159082SYNJ110082.022ENSXMAG00000017524synj110068.510Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction
GO:0004438phosphatidylinositol-3-phosphatase activity18093523.IDAFunction
GO:0004439phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity21873635.IBAFunction
GO:0004439phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity18093523.IDAFunction
GO:0004439phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity18591654.IMPFunction
GO:0004439phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity-ISSFunction
GO:0004439phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity-TASFunction
GO:0005829cytosol-TASComponent
GO:0005874microtubule9428629.ISSComponent
GO:0006661phosphatidylinositol biosynthetic process-TASProcess
GO:0006836neurotransmitter transport-ISSProcess
GO:0007420brain development21873635.IBAProcess
GO:0007612learning21873635.IBAProcess
GO:0007612learning18591654.IMPProcess
GO:0012506vesicle membrane-ISSComponent
GO:0016082synaptic vesicle priming-ISSProcess
GO:0016191synaptic vesicle uncoating-ISSProcess
GO:0017124SH3 domain binding21873635.IBAFunction
GO:0030117membrane coat-ISSComponent
GO:0030132clathrin coat of coated pit9428629.ISSComponent
GO:0034595phosphatidylinositol phosphate 5-phosphatase activity-ISSFunction
GO:0043195terminal bouton-ISSComponent
GO:0043647inositol phosphate metabolic process-TASProcess
GO:0043812phosphatidylinositol-4-phosphate phosphatase activity18093523.IDAFunction
GO:0046488phosphatidylinositol metabolic process-ISSProcess
GO:0046855inositol phosphate dephosphorylation21873635.IBAProcess
GO:0046855inositol phosphate dephosphorylation-ISSProcess
GO:0046856phosphatidylinositol dephosphorylation21873635.IBAProcess
GO:0046856phosphatidylinositol dephosphorylation18093523.IDAProcess
GO:0046856phosphatidylinositol dephosphorylation18591654.IMPProcess
GO:0046856phosphatidylinositol dephosphorylation-ISSProcess
GO:0048471perinuclear region of cytoplasm21873635.IBAComponent
GO:0048471perinuclear region of cytoplasm-ISSComponent
GO:0048488synaptic vesicle endocytosis21873635.IBAProcess
GO:0048488synaptic vesicle endocytosis18093523.IGIProcess
GO:0048488synaptic vesicle endocytosis-ISSProcess
GO:0048489synaptic vesicle transport-ISSProcess
GO:0061024membrane organization-TASProcess
GO:0097060synaptic membrane9428629.ISSComponent
GO:0098793presynapse21873635.IBAComponent
GO:0098793presynapse18093523.IDAComponent
GO:1904980positive regulation of endosome organization22511594.IMPProcess

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