EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

GWAS

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000160799 (Gene tree)
Gene ID: 151903
Gene Symbol: CCDC12
Alias: MGC23918
Full Name: coiled-coil domain containing 12
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 60,293 bases
Position: chr3:46,921,726-46,982,018
Accession: 28332
RBP type: canonical RBP
Summary: CCDC12 (Coiled-Coil Domain Containing 12) is a Protein Coding gene. Diseases associated with CCDC12 include Gray Platelet Syndrome. Among its related pathways are mRNA Splicing - Major Pathway.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000416263	cwf18	PF08315.12	4.2e-37	1	1
ENSP00000292314	cwf18	PF08315.12	5.4e-37	1	1
ENSP00000387490	cwf18	PF08315.12	3.6e-10	1	1
ENSP00000473887	cwf18	PF08315.12	4.8e-09	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000605875	CCDC12-213	380	-	ENSP00000473887	81 (aa)	-	S4R331
ENST00000604164	CCDC12-209	399	-	-	- (aa)	-	-
ENST00000494655	CCDC12-207	793	-	-	- (aa)	-	-
ENST00000425441	CCDC12-202	1097	-	ENSP00000416263	166 (aa)	-	Q8WUD4
ENST00000492819	CCDC12-206	853	-	-	- (aa)	-	-
ENST00000603885	CCDC12-208	560	-	-	- (aa)	-	-
ENST00000605358	CCDC12-212	402	NR_102269	-	- (aa)	-	-
ENST00000488069	CCDC12-205	897	-	-	- (aa)	-	-
ENST00000292314	CCDC12-201	1017	XM_011533396	ENSP00000292314	179 (aa)	XP_011531698	J3KR35
ENST00000604367	CCDC12-211	2412	-	-	- (aa)	-	-
ENST00000460035	CCDC12-204	572	-	-	- (aa)	-	-
ENST00000446836	CCDC12-203	412	-	ENSP00000387490	89 (aa)	-	C9JUN5
ENST00000604181	CCDC12-210	550	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000160799's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa03040	Spliceosome	KEGG

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000160799	rs7628747	3	46960500	?	White blood cell count	29403010	[0.018-0.035] unit increase novel	0.02648	EFO_0004308
ENSG00000160799	rs189587938	3	46943013	G	Eotaxin levels	27989323	[0.21-0.47] SD units decrease	0.3374	EFO_0008122
ENSG00000160799	rs13092573	3	46947071	?	White blood cell count	30595370			EFO_0004308
ENSG00000160799	rs78580841	3	46944962	T	Chronotype	30696823		1.0433117	EFO_0008328

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000160799's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000160799	CCDC12	96	70.370	ENSAPOG00000014426	ccdc12	58	70.807	Acanthochromis_polyacanthus
ENSG00000160799	CCDC12	100	92.771	ENSAMEG00000012658	CCDC12	100	92.771	Ailuropoda_melanoleuca
ENSG00000160799	CCDC12	72	74.167	ENSACIG00000022676	-	81	75.439	Amphilophus_citrinellus
ENSG00000160799	CCDC12	68	75.221	ENSACIG00000015192	ccdc12	80	75.221	Amphilophus_citrinellus
ENSG00000160799	CCDC12	96	70.807	ENSAOCG00000024127	ccdc12	95	70.807	Amphiprion_ocellaris
ENSG00000160799	CCDC12	96	70.370	ENSAPEG00000009155	ccdc12	84	70.807	Amphiprion_percula
ENSG00000160799	CCDC12	81	69.630	ENSATEG00000004807	ccdc12	100	69.630	Anabas_testudineus
ENSG00000160799	CCDC12	81	72.794	ENSAPLG00000005482	CCDC12	99	72.794	Anas_platyrhynchos
ENSG00000160799	CCDC12	98	73.810	ENSACAG00000004727	CCDC12	90	71.591	Anolis_carolinensis
ENSG00000160799	CCDC12	81	98.507	ENSANAG00000024483	CCDC12	100	98.507	Aotus_nancymaae
ENSG00000160799	CCDC12	96	69.136	ENSACLG00000005356	ccdc12	98	69.136	Astatotilapia_calliptera
ENSG00000160799	CCDC12	87	61.905	ENSACLG00000012742	-	92	61.905	Astatotilapia_calliptera
ENSG00000160799	CCDC12	95	69.325	ENSAMXG00000016319	ccdc12	98	69.325	Astyanax_mexicanus
ENSG00000160799	CCDC12	100	94.382	ENSBTAG00000011311	CCDC12	100	91.667	Bos_taurus
ENSG00000160799	CCDC12	86	38.514	WBGene00022092	Y69A2AR.21	92	37.500	Caenorhabditis_elegans
ENSG00000160799	CCDC12	100	97.590	ENSCJAG00000002280	CCDC12	100	97.590	Callithrix_jacchus
ENSG00000160799	CCDC12	100	94.382	ENSCAFG00000013588	CCDC12	100	93.976	Canis_familiaris
ENSG00000160799	CCDC12	100	94.382	ENSCAFG00020014024	CCDC12	99	90.449	Canis_lupus_dingo
ENSG00000160799	CCDC12	100	93.258	ENSCHIG00000014512	CCDC12	100	91.071	Capra_hircus
ENSG00000160799	CCDC12	100	93.373	ENSTSYG00000032837	CCDC12	100	93.373	Carlito_syrichta
ENSG00000160799	CCDC12	81	73.881	ENSCAPG00000007935	CCDC12	100	73.881	Cavia_aperea
ENSG00000160799	CCDC12	100	93.373	ENSCPOG00000032515	CCDC12	100	93.373	Cavia_porcellus
ENSG00000160799	CCDC12	100	97.590	ENSCCAG00000020126	CCDC12	100	96.648	Cebus_capucinus
ENSG00000160799	CCDC12	100	81.967	ENSCATG00000033681	CCDC12	100	81.967	Cercocebus_atys
ENSG00000160799	CCDC12	100	95.506	ENSCLAG00000016013	CCDC12	100	95.181	Chinchilla_lanigera
ENSG00000160799	CCDC12	100	100.000	ENSCSAG00000016154	CCDC12	100	97.765	Chlorocebus_sabaeus
ENSG00000160799	CCDC12	99	75.301	ENSCPBG00000015804	CCDC12	81	74.118	Chrysemys_picta_bellii
ENSG00000160799	CCDC12	93	44.706	ENSCING00000005261	-	81	52.482	Ciona_intestinalis
ENSG00000160799	CCDC12	100	100.000	ENSCANG00000020857	CCDC12	100	97.765	Colobus_angolensis_palliatus
ENSG00000160799	CCDC12	100	90.964	ENSCGRG00001000459	Ccdc12	100	90.964	Cricetulus_griseus_chok1gshd
ENSG00000160799	CCDC12	100	90.964	ENSCGRG00000012816	Ccdc12	100	90.964	Cricetulus_griseus_crigri
ENSG00000160799	CCDC12	91	69.935	ENSCSEG00000004543	ccdc12	93	69.935	Cynoglossus_semilaevis
ENSG00000160799	CCDC12	76	72.222	ENSCVAG00000011342	ccdc12	100	69.630	Cyprinodon_variegatus
ENSG00000160799	CCDC12	96	66.875	ENSDARG00000023003	ccdc12	98	66.875	Danio_rerio
ENSG00000160799	CCDC12	100	86.420	ENSDNOG00000048173	-	100	78.723	Dasypus_novemcinctus
ENSG00000160799	CCDC12	100	92.169	ENSDORG00000016567	-	100	92.169	Dipodomys_ordii
ENSG00000160799	CCDC12	100	83.146	ENSDORG00000024399	-	100	81.325	Dipodomys_ordii
ENSG00000160799	CCDC12	92	45.098	FBgn0039732	CG15525	88	44.444	Drosophila_melanogaster
ENSG00000160799	CCDC12	100	89.888	ENSETEG00000000030	CCDC12	100	92.035	Echinops_telfairi
ENSG00000160799	CCDC12	98	61.963	ENSEBUG00000005674	ccdc12	98	62.264	Eptatretus_burgeri
ENSG00000160799	CCDC12	100	93.976	ENSEASG00005008148	-	70	94.083	Equus_asinus_asinus
ENSG00000160799	CCDC12	100	93.258	ENSECAG00000008649	CCDC12	100	88.554	Equus_caballus
ENSG00000160799	CCDC12	96	69.753	ENSELUG00000024105	ccdc12	98	69.753	Esox_lucius
ENSG00000160799	CCDC12	100	94.578	ENSFCAG00000015474	CCDC12	100	94.578	Felis_catus
ENSG00000160799	CCDC12	94	65.409	ENSFALG00000001895	CCDC12	98	64.780	Ficedula_albicollis
ENSG00000160799	CCDC12	99	94.512	ENSFDAG00000002549	CCDC12	99	94.512	Fukomys_damarensis
ENSG00000160799	CCDC12	96	69.753	ENSFHEG00000016247	ccdc12	91	69.753	Fundulus_heteroclitus
ENSG00000160799	CCDC12	92	60.784	ENSGMOG00000016901	ccdc12	94	60.784	Gadus_morhua
ENSG00000160799	CCDC12	87	71.034	ENSGAFG00000006762	ccdc12	98	68.323	Gambusia_affinis
ENSG00000160799	CCDC12	91	69.079	ENSGACG00000008629	ccdc12	98	67.081	Gasterosteus_aculeatus
ENSG00000160799	CCDC12	99	76.506	ENSGAGG00000019688	CCDC12	98	76.506	Gopherus_agassizii
ENSG00000160799	CCDC12	100	100.000	ENSGGOG00000009012	CCDC12	100	100.000	Gorilla_gorilla
ENSG00000160799	CCDC12	96	69.753	ENSHBUG00000016447	ccdc12	98	69.753	Haplochromis_burtoni
ENSG00000160799	CCDC12	100	93.373	ENSHGLG00000014058	CCDC12	100	93.373	Heterocephalus_glaber_female
ENSG00000160799	CCDC12	100	93.373	ENSHGLG00100005918	CCDC12	100	93.373	Heterocephalus_glaber_male
ENSG00000160799	CCDC12	95	67.284	ENSHCOG00000015164	ccdc12	98	67.284	Hippocampus_comes
ENSG00000160799	CCDC12	96	66.667	ENSIPUG00000001310	Ccdc12	98	66.667	Ictalurus_punctatus
ENSG00000160799	CCDC12	100	93.373	ENSSTOG00000003085	CCDC12	100	93.373	Ictidomys_tridecemlineatus
ENSG00000160799	CCDC12	100	94.382	ENSJJAG00000014918	Ccdc12	100	90.964	Jaculus_jaculus
ENSG00000160799	CCDC12	91	68.831	ENSKMAG00000013891	ccdc12	98	66.871	Kryptolebias_marmoratus
ENSG00000160799	CCDC12	91	71.523	ENSLBEG00000024714	ccdc12	85	69.375	Labrus_bergylta
ENSG00000160799	CCDC12	96	74.375	ENSLOCG00000005683	ccdc12	95	71.264	Lepisosteus_oculatus
ENSG00000160799	CCDC12	98	86.503	ENSLAFG00000027745	-	100	86.503	Loxodonta_africana
ENSG00000160799	CCDC12	67	93.750	ENSLAFG00000022573	-	98	93.750	Loxodonta_africana
ENSG00000160799	CCDC12	100	98.876	ENSMFAG00000002976	CCDC12	100	97.207	Macaca_fascicularis
ENSG00000160799	CCDC12	100	98.876	ENSMMUG00000019810	CCDC12	100	97.207	Macaca_mulatta
ENSG00000160799	CCDC12	100	98.876	ENSMNEG00000035785	CCDC12	100	97.207	Macaca_nemestrina
ENSG00000160799	CCDC12	100	100.000	ENSMLEG00000038060	CCDC12	100	97.765	Mandrillus_leucophaeus
ENSG00000160799	CCDC12	87	72.603	ENSMAMG00000012165	ccdc12	98	69.136	Mastacembelus_armatus
ENSG00000160799	CCDC12	87	62.585	ENSMZEG00005019013	-	92	62.585	Maylandia_zebra
ENSG00000160799	CCDC12	96	69.753	ENSMZEG00005014728	ccdc12	98	69.753	Maylandia_zebra
ENSG00000160799	CCDC12	80	71.642	ENSMGAG00000002815	CCDC12	98	66.092	Meleagris_gallopavo
ENSG00000160799	CCDC12	100	90.361	ENSMAUG00000008879	Ccdc12	100	90.361	Mesocricetus_auratus
ENSG00000160799	CCDC12	100	94.444	ENSMICG00000032886	CCDC12	100	94.012	Microcebus_murinus
ENSG00000160799	CCDC12	100	90.964	ENSMOCG00000004483	Ccdc12	100	90.964	Microtus_ochrogaster
ENSG00000160799	CCDC12	62	75.728	ENSMMOG00000001860	ccdc12	71	75.728	Mola_mola
ENSG00000160799	CCDC12	100	66.467	ENSMODG00000025021	-	100	66.467	Monodelphis_domestica
ENSG00000160799	CCDC12	100	79.762	ENSMODG00000013967	-	100	80.357	Monodelphis_domestica
ENSG00000160799	CCDC12	100	66.467	ENSMODG00000022615	-	100	66.467	Monodelphis_domestica
ENSG00000160799	CCDC12	96	68.519	ENSMALG00000011850	ccdc12	98	68.519	Monopterus_albus
ENSG00000160799	CCDC12	100	90.361	MGP_CAROLIEiJ_G0032737	-	100	90.361	Mus_caroli
ENSG00000160799	CCDC12	100	90.361	ENSMUSG00000019659	Ccdc12	100	90.361	Mus_musculus
ENSG00000160799	CCDC12	100	90.361	MGP_PahariEiJ_G0015604	Ccdc12	100	90.361	Mus_pahari
ENSG00000160799	CCDC12	100	90.964	MGP_SPRETEiJ_G0033885	Ccdc12	100	90.964	Mus_spretus
ENSG00000160799	CCDC12	100	87.952	ENSMLUG00000009547	CCDC12	100	87.952	Myotis_lucifugus
ENSG00000160799	CCDC12	100	91.566	ENSNGAG00000004149	Ccdc12	100	91.566	Nannospalax_galili
ENSG00000160799	CCDC12	96	63.522	ENSNBRG00000015275	ccdc12	98	63.125	Neolamprologus_brichardi
ENSG00000160799	CCDC12	100	96.988	ENSNLEG00000006219	CCDC12	100	96.988	Nomascus_leucogenys
ENSG00000160799	CCDC12	100	85.393	ENSOPRG00000005086	CCDC12	99	84.146	Ochotona_princeps
ENSG00000160799	CCDC12	100	94.382	ENSODEG00000012202	CCDC12	100	93.976	Octodon_degus
ENSG00000160799	CCDC12	96	69.753	ENSONIG00000003061	ccdc12	98	69.753	Oreochromis_niloticus
ENSG00000160799	CCDC12	80	76.119	ENSOANG00000004263	-	100	76.119	Ornithorhynchus_anatinus
ENSG00000160799	CCDC12	100	92.169	ENSOCUG00000012431	CCDC12	86	91.667	Oryctolagus_cuniculus
ENSG00000160799	CCDC12	91	69.481	ENSORLG00000008126	ccdc12	93	69.481	Oryzias_latipes
ENSG00000160799	CCDC12	91	70.395	ENSORLG00020013927	ccdc12	98	68.323	Oryzias_latipes_hni
ENSG00000160799	CCDC12	91	70.395	ENSORLG00015020115	ccdc12	98	68.323	Oryzias_latipes_hsok
ENSG00000160799	CCDC12	96	68.750	ENSOMEG00000022304	ccdc12	98	68.750	Oryzias_melastigma
ENSG00000160799	CCDC12	96	68.750	ENSOMEG00000014082	ccdc12	98	68.750	Oryzias_melastigma
ENSG00000160799	CCDC12	67	96.429	ENSOGAG00000016807	CCDC12	100	96.429	Otolemur_garnettii
ENSG00000160799	CCDC12	81	89.051	ENSOARG00000006426	CCDC12	100	90.511	Ovis_aries
ENSG00000160799	CCDC12	100	99.441	ENSPPAG00000028782	CCDC12	100	99.441	Pan_paniscus
ENSG00000160799	CCDC12	100	94.578	ENSPPRG00000013547	CCDC12	100	94.578	Panthera_pardus
ENSG00000160799	CCDC12	100	94.578	ENSPTIG00000014875	CCDC12	99	92.486	Panthera_tigris_altaica
ENSG00000160799	CCDC12	100	100.000	ENSPTRG00000014862	CCDC12	100	100.000	Pan_troglodytes
ENSG00000160799	CCDC12	100	100.000	ENSPANG00000017485	CCDC12	98	98.256	Papio_anubis
ENSG00000160799	CCDC12	96	69.565	ENSPKIG00000019130	ccdc12	98	71.429	Paramormyrops_kingsleyae
ENSG00000160799	CCDC12	67	82.143	ENSPSIG00000010867	CCDC12	100	82.143	Pelodiscus_sinensis
ENSG00000160799	CCDC12	96	68.519	ENSPMGG00000012211	ccdc12	98	68.519	Periophthalmus_magnuspinnatus
ENSG00000160799	CCDC12	100	90.964	ENSPEMG00000022196	-	100	90.964	Peromyscus_maniculatus_bairdii
ENSG00000160799	CCDC12	100	71.856	ENSPEMG00000001376	-	100	71.856	Peromyscus_maniculatus_bairdii
ENSG00000160799	CCDC12	94	66.879	ENSPMAG00000000005	ccdc12	98	64.286	Petromyzon_marinus
ENSG00000160799	CCDC12	100	82.022	ENSPCIG00000025941	CCDC12	95	86.275	Phascolarctos_cinereus
ENSG00000160799	CCDC12	84	73.050	ENSPFOG00000000343	ccdc12	98	69.753	Poecilia_formosa
ENSG00000160799	CCDC12	91	70.395	ENSPLAG00000019010	ccdc12	98	68.323	Poecilia_latipinna
ENSG00000160799	CCDC12	84	73.050	ENSPMEG00000022371	ccdc12	84	66.279	Poecilia_mexicana
ENSG00000160799	CCDC12	91	71.242	ENSPREG00000020932	ccdc12	84	65.698	Poecilia_reticulata
ENSG00000160799	CCDC12	100	100.000	ENSPPYG00000013924	CCDC12	89	98.883	Pongo_abelii
ENSG00000160799	CCDC12	100	92.814	ENSPCAG00000005800	CCDC12	100	93.413	Procavia_capensis
ENSG00000160799	CCDC12	100	93.333	ENSPCOG00000018682	CCDC12	100	91.111	Propithecus_coquereli
ENSG00000160799	CCDC12	100	92.169	ENSPVAG00000004204	CCDC12	100	92.169	Pteropus_vampyrus
ENSG00000160799	CCDC12	96	69.753	ENSPNYG00000016295	ccdc12	98	69.753	Pundamilia_nyererei
ENSG00000160799	CCDC12	96	53.704	ENSPNAG00000028558	ccdc12	90	76.786	Pygocentrus_nattereri
ENSG00000160799	CCDC12	100	90.361	ENSRNOG00000020946	Ccdc12	100	90.361	Rattus_norvegicus
ENSG00000160799	CCDC12	100	100.000	ENSRBIG00000039910	CCDC12	100	98.324	Rhinopithecus_bieti
ENSG00000160799	CCDC12	100	100.000	ENSRROG00000039721	CCDC12	100	98.795	Rhinopithecus_roxellana
ENSG00000160799	CCDC12	100	97.590	ENSSBOG00000035443	CCDC12	100	96.648	Saimiri_boliviensis_boliviensis
ENSG00000160799	CCDC12	100	80.899	ENSSHAG00000003265	-	95	83.660	Sarcophilus_harrisii
ENSG00000160799	CCDC12	100	70.238	ENSSFOG00015001307	ccdc12	100	70.238	Scleropages_formosus
ENSG00000160799	CCDC12	96	70.370	ENSSMAG00000019856	ccdc12	98	70.370	Scophthalmus_maximus
ENSG00000160799	CCDC12	89	71.141	ENSSDUG00000006549	ccdc12	96	68.987	Seriola_dumerili
ENSG00000160799	CCDC12	96	69.136	ENSSLDG00000015956	ccdc12	98	69.136	Seriola_lalandi_dorsalis
ENSG00000160799	CCDC12	58	92.188	ENSSARG00000004686	-	58	92.188	Sorex_araneus
ENSG00000160799	CCDC12	98	64.045	ENSSPUG00000013054	CCDC12	91	51.351	Sphenodon_punctatus
ENSG00000160799	CCDC12	96	69.753	ENSSPAG00000007010	ccdc12	98	69.753	Stegastes_partitus
ENSG00000160799	CCDC12	100	94.382	ENSSSCG00000011329	-	100	93.976	Sus_scrofa
ENSG00000160799	CCDC12	93	51.299	ENSSSCG00000007882	-	97	50.649	Sus_scrofa
ENSG00000160799	CCDC12	99	64.045	ENSTGUG00000000186	CCDC12	97	67.213	Taeniopygia_guttata
ENSG00000160799	CCDC12	90	66.000	ENSTRUG00000014023	ccdc12	83	64.151	Takifugu_rubripes
ENSG00000160799	CCDC12	96	69.182	ENSTNIG00000018407	ccdc12	96	69.182	Tetraodon_nigroviridis
ENSG00000160799	CCDC12	100	88.889	ENSTBEG00000000048	CCDC12	100	66.467	Tupaia_belangeri
ENSG00000160799	CCDC12	100	83.333	ENSTTRG00000015854	CCDC12	100	83.333	Tursiops_truncatus
ENSG00000160799	CCDC12	100	94.382	ENSUAMG00000025548	CCDC12	97	95.000	Ursus_americanus
ENSG00000160799	CCDC12	100	94.382	ENSUMAG00000004346	CCDC12	100	93.976	Ursus_maritimus
ENSG00000160799	CCDC12	100	70.787	ENSVPAG00000000070	-	100	76.106	Vicugna_pacos
ENSG00000160799	CCDC12	100	94.382	ENSVVUG00000004582	CCDC12	100	93.976	Vulpes_vulpes
ENSG00000160799	CCDC12	80	77.444	ENSXETG00000013123	ccdc12	98	76.692	Xenopus_tropicalis
ENSG00000160799	CCDC12	91	70.395	ENSXCOG00000019741	ccdc12	98	68.323	Xiphophorus_couchianus
ENSG00000160799	CCDC12	91	70.395	ENSXMAG00000014098	ccdc12	84	64.912	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	20562859.22365833.	IPI	Function