EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Phenotypes

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000160818 (Gene tree)
Gene ID: 54865
Gene Symbol: GPATCH4
Alias: FLJ20249|DKFZP434F1735|GPATC4
Full Name: G-patch domain containing 4
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Minus strand
Length: 7,189 bases
Position: chr1:156,594,308-156,601,496
Accession: 25982
RBP type: canonical RBP
Summary: (G-Patch Domain Containing 4) is a Protein Coding gene. Diseases associated with GPATCH4 include Encephalopathy, Progressive, Early-Onset, With Brain Edema And/Or Leukoencephalopathy. Gene Ontology (GO) annotations related to this gene include nucleic acid binding. An important paralog of this gene is PINX1.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000412620	G-patch	PF01585.23	6.5e-09	1	1
ENSP00000357215	G-patch	PF01585.23	1.1e-08	1	1
ENSP00000396441	G-patch	PF01585.23	1.1e-08	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30352994	Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture	RIC & Jurkat	2018 Oct 23	Perez-Perri JI	DOI:10.1038/s41467-018-06557-8

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000527691	GPATCH4-213	781	-	-	- (aa)	-	-
ENST00000498756	GPATCH4-210	634	-	-	- (aa)	-	-
ENST00000494414	GPATCH4-207	740	-	-	- (aa)	-	-
ENST00000497287	GPATCH4-208	837	-	-	- (aa)	-	-
ENST00000368232	GPATCH4-201	1972	-	ENSP00000357215	370 (aa)	-	A0A0A0MRK1
ENST00000415314	GPATCH4-202	934	XM_005245287	ENSP00000412620	264 (aa)	XP_005245344	F8W895
ENST00000474904	GPATCH4-206	719	-	ENSP00000436907	143 (aa)	-	F2Z3C6
ENST00000438976	GPATCH4-203	1159	-	ENSP00000396441	375 (aa)	-	E9PAV9
ENST00000531900	GPATCH4-216	653	-	-	- (aa)	-	-
ENST00000463513	GPATCH4-204	857	-	ENSP00000436243	119 (aa)	-	E9PPY4
ENST00000506832	GPATCH4-211	1029	-	-	- (aa)	-	-
ENST00000529520	GPATCH4-214	552	-	-	- (aa)	-	-
ENST00000531129	GPATCH4-215	532	-	-	- (aa)	-	-
ENST00000473910	GPATCH4-205	2464	-	-	- (aa)	-	-
ENST00000525375	GPATCH4-212	513	-	-	- (aa)	-	-
ENST00000498641	GPATCH4-209	534	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000160818's gene model file

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000160818	Blood Vessels	8.397e-005	-

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000160818's network

* RBP PPI network refers to all genes directly bind to RBP

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000160818	GPATCH4	79	32.231	ENSG00000254093	PINX1	60	32.231

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000160818	GPATCH4	89	47.788	ENSAPOG00000008436	gpatch4	51	46.569	Acanthochromis_polyacanthus
ENSG00000160818	GPATCH4	95	91.150	ENSAMEG00000014829	GPATCH4	82	73.789	Ailuropoda_melanoleuca
ENSG00000160818	GPATCH4	87	48.113	ENSACIG00000017309	-	73	54.545	Amphilophus_citrinellus
ENSG00000160818	GPATCH4	95	100.000	ENSANAG00000035354	GPATCH4	100	90.501	Aotus_nancymaae
ENSG00000160818	GPATCH4	92	47.458	ENSACLG00000010456	gpatch4	69	47.154	Astatotilapia_calliptera
ENSG00000160818	GPATCH4	92	44.915	ENSAMXG00000034049	gpatch4	83	42.581	Astyanax_mexicanus
ENSG00000160818	GPATCH4	95	92.035	ENSBTAG00000000406	GPATCH4	85	75.214	Bos_taurus
ENSG00000160818	GPATCH4	98	86.325	ENSCJAG00000001883	-	96	87.288	Callithrix_jacchus
ENSG00000160818	GPATCH4	100	93.443	ENSCJAG00000006048	GPATCH4	100	93.443	Callithrix_jacchus
ENSG00000160818	GPATCH4	98	93.162	ENSCJAG00000031662	-	84	95.041	Callithrix_jacchus
ENSG00000160818	GPATCH4	95	87.611	ENSCAFG00000016788	GPATCH4	75	70.245	Canis_familiaris
ENSG00000160818	GPATCH4	100	83.471	ENSCAFG00020005274	-	95	83.471	Canis_lupus_dingo
ENSG00000160818	GPATCH4	99	83.898	ENSCAFG00020006707	-	96	83.898	Canis_lupus_dingo
ENSG00000160818	GPATCH4	95	91.150	ENSCHIG00000021295	GPATCH4	85	75.354	Capra_hircus
ENSG00000160818	GPATCH4	100	89.256	ENSTSYG00000026904	-	98	79.137	Carlito_syrichta
ENSG00000160818	GPATCH4	100	87.395	ENSCPOG00000013701	-	100	87.395	Cavia_porcellus
ENSG00000160818	GPATCH4	100	93.443	ENSCCAG00000036114	GPATCH4	100	93.443	Cebus_capucinus
ENSG00000160818	GPATCH4	100	97.902	ENSCATG00000042152	GPATCH4	100	97.902	Cercocebus_atys
ENSG00000160818	GPATCH4	95	92.035	ENSCLAG00000002967	-	81	70.112	Chinchilla_lanigera
ENSG00000160818	GPATCH4	95	99.115	ENSCSAG00000002161	GPATCH4	80	94.398	Chlorocebus_sabaeus
ENSG00000160818	GPATCH4	95	55.000	ENSCPBG00000025803	GPATCH4	69	53.333	Chrysemys_picta_bellii
ENSG00000160818	GPATCH4	84	44.860	ENSCING00000004717	-	70	44.318	Ciona_intestinalis
ENSG00000160818	GPATCH4	80	40.196	ENSCSAVG00000003297	-	64	41.916	Ciona_savignyi
ENSG00000160818	GPATCH4	100	98.601	ENSCANG00000030031	GPATCH4	100	98.601	Colobus_angolensis_palliatus
ENSG00000160818	GPATCH4	95	88.496	ENSCGRG00001016898	Gpatch4	84	65.634	Cricetulus_griseus_chok1gshd
ENSG00000160818	GPATCH4	95	88.496	ENSCGRG00000008399	Gpatch4	84	65.634	Cricetulus_griseus_crigri
ENSG00000160818	GPATCH4	63	56.000	ENSCSEG00000012030	gpatch4	55	44.944	Cynoglossus_semilaevis
ENSG00000160818	GPATCH4	98	46.400	ENSDARG00000091931	gpatch4	78	45.638	Danio_rerio
ENSG00000160818	GPATCH4	95	90.265	ENSDNOG00000034673	GPATCH4	78	76.353	Dasypus_novemcinctus
ENSG00000160818	GPATCH4	97	86.087	ENSDORG00000011332	-	87	79.856	Dipodomys_ordii
ENSG00000160818	GPATCH4	61	46.575	FBgn0039829	CG15561	56	35.784	Drosophila_melanogaster
ENSG00000160818	GPATCH4	95	88.496	ENSETEG00000000659	-	82	61.930	Echinops_telfairi
ENSG00000160818	GPATCH4	51	45.902	ENSEBUG00000006498	-	55	43.114	Eptatretus_burgeri
ENSG00000160818	GPATCH4	95	92.035	ENSEASG00005018284	GPATCH4	78	77.391	Equus_asinus_asinus
ENSG00000160818	GPATCH4	95	91.150	ENSECAG00000011135	GPATCH4	97	79.130	Equus_caballus
ENSG00000160818	GPATCH4	95	81.416	ENSEEUG00000003221	-	79	63.277	Erinaceus_europaeus
ENSG00000160818	GPATCH4	91	93.519	ENSFCAG00000006554	GPATCH4	95	71.268	Felis_catus
ENSG00000160818	GPATCH4	92	48.739	ENSFHEG00000003097	gpatch4	51	48.205	Fundulus_heteroclitus
ENSG00000160818	GPATCH4	87	45.455	ENSGALG00000048365	GPATCH4	51	49.730	Gallus_gallus
ENSG00000160818	GPATCH4	98	44.538	ENSGAFG00000021732	gpatch4	65	45.685	Gambusia_affinis
ENSG00000160818	GPATCH4	97	46.400	ENSGACG00000013318	gpatch4	60	48.259	Gasterosteus_aculeatus
ENSG00000160818	GPATCH4	95	56.667	ENSGAGG00000020710	GPATCH4	67	54.146	Gopherus_agassizii
ENSG00000160818	GPATCH4	100	100.000	ENSGGOG00000000753	GPATCH4	100	100.000	Gorilla_gorilla
ENSG00000160818	GPATCH4	92	47.458	ENSHBUG00000009675	gpatch4	69	47.154	Haplochromis_burtoni
ENSG00000160818	GPATCH4	99	89.831	ENSHGLG00000011346	-	94	89.831	Heterocephalus_glaber_female
ENSG00000160818	GPATCH4	98	90.598	ENSHGLG00100018277	-	97	83.803	Heterocephalus_glaber_male
ENSG00000160818	GPATCH4	98	44.538	ENSHCOG00000007016	gpatch4	56	45.596	Hippocampus_comes
ENSG00000160818	GPATCH4	98	50.806	ENSIPUG00000006348	gpatch4	65	46.154	Ictalurus_punctatus
ENSG00000160818	GPATCH4	100	89.916	ENSSTOG00000020510	GPATCH4	91	89.916	Ictidomys_tridecemlineatus
ENSG00000160818	GPATCH4	97	49.600	ENSKMAG00000015765	gpatch4	53	49.749	Kryptolebias_marmoratus
ENSG00000160818	GPATCH4	93	48.276	ENSLBEG00000009364	-	60	47.739	Labrus_bergylta
ENSG00000160818	GPATCH4	92	48.276	ENSLACG00000009700	GPATCH4	54	52.660	Latimeria_chalumnae
ENSG00000160818	GPATCH4	98	41.860	ENSLOCG00000008820	gpatch4	57	43.564	Lepisosteus_oculatus
ENSG00000160818	GPATCH4	98	65.845	ENSLAFG00000028327	-	82	62.147	Loxodonta_africana
ENSG00000160818	GPATCH4	100	97.203	ENSMFAG00000030965	GPATCH4	100	97.203	Macaca_fascicularis
ENSG00000160818	GPATCH4	100	97.902	ENSMMUG00000002624	GPATCH4	100	97.902	Macaca_mulatta
ENSG00000160818	GPATCH4	100	97.203	ENSMNEG00000028844	GPATCH4	100	97.203	Macaca_nemestrina
ENSG00000160818	GPATCH4	100	97.203	ENSMLEG00000037909	GPATCH4	100	97.203	Mandrillus_leucophaeus
ENSG00000160818	GPATCH4	92	47.458	ENSMZEG00005017452	gpatch4	53	46.602	Maylandia_zebra
ENSG00000160818	GPATCH4	96	85.965	ENSMAUG00000008406	-	93	87.500	Mesocricetus_auratus
ENSG00000160818	GPATCH4	99	74.576	ENSMICG00000038615	-	89	76.471	Microcebus_murinus
ENSG00000160818	GPATCH4	93	83.784	ENSMICG00000034025	-	96	82.456	Microcebus_murinus
ENSG00000160818	GPATCH4	91	94.444	ENSMICG00000013624	GPATCH4	100	80.851	Microcebus_murinus
ENSG00000160818	GPATCH4	82	88.776	ENSMICG00000047155	-	88	88.776	Microcebus_murinus
ENSG00000160818	GPATCH4	96	84.211	ENSMOCG00000008875	-	100	84.211	Microtus_ochrogaster
ENSG00000160818	GPATCH4	92	50.420	ENSMMOG00000017095	gpatch4	96	50.467	Mola_mola
ENSG00000160818	GPATCH4	95	62.931	ENSMODG00000014154	-	96	60.714	Monodelphis_domestica
ENSG00000160818	GPATCH4	95	63.793	ENSMODG00000016818	-	69	63.776	Monodelphis_domestica
ENSG00000160818	GPATCH4	95	86.726	MGP_CAROLIEiJ_G0025152	Gpatch4	82	82.564	Mus_caroli
ENSG00000160818	GPATCH4	95	85.841	ENSMUSG00000028069	Gpatch4	78	83.422	Mus_musculus
ENSG00000160818	GPATCH4	95	85.841	MGP_PahariEiJ_G0026595	-	82	82.564	Mus_pahari
ENSG00000160818	GPATCH4	95	85.841	MGP_SPRETEiJ_G0026093	Gpatch4	78	83.957	Mus_spretus
ENSG00000160818	GPATCH4	95	86.726	ENSMPUG00000004136	-	80	64.957	Mustela_putorius_furo
ENSG00000160818	GPATCH4	95	91.150	ENSMLUG00000009571	GPATCH4	78	74.148	Myotis_lucifugus
ENSG00000160818	GPATCH4	100	82.353	ENSNGAG00000019958	-	91	82.353	Nannospalax_galili
ENSG00000160818	GPATCH4	100	96.533	ENSNLEG00000027678	GPATCH4	100	96.533	Nomascus_leucogenys
ENSG00000160818	GPATCH4	93	65.766	ENSMEUG00000006861	-	71	57.513	Notamacropus_eugenii
ENSG00000160818	GPATCH4	95	93.805	ENSOPRG00000000586	GPATCH4	89	66.753	Ochotona_princeps
ENSG00000160818	GPATCH4	92	86.239	ENSODEG00000005222	-	95	86.239	Octodon_degus
ENSG00000160818	GPATCH4	100	91.597	ENSODEG00000010437	-	100	91.597	Octodon_degus
ENSG00000160818	GPATCH4	71	90.476	ENSODEG00000016849	-	75	92.683	Octodon_degus
ENSG00000160818	GPATCH4	92	48.305	ENSONIG00000002261	gpatch4	52	46.535	Oreochromis_niloticus
ENSG00000160818	GPATCH4	95	89.381	ENSOCUG00000025781	-	78	69.516	Oryctolagus_cuniculus
ENSG00000160818	GPATCH4	86	47.573	ENSORLG00000016102	-	94	47.573	Oryzias_latipes
ENSG00000160818	GPATCH4	92	42.500	ENSORLG00020013892	gpatch4	54	44.898	Oryzias_latipes_hni
ENSG00000160818	GPATCH4	92	42.500	ENSORLG00015019725	gpatch4	55	44.898	Oryzias_latipes_hsok
ENSG00000160818	GPATCH4	95	93.805	ENSOGAG00000006698	-	80	77.778	Otolemur_garnettii
ENSG00000160818	GPATCH4	95	91.150	ENSOARG00000006123	GPATCH4	85	76.771	Ovis_aries
ENSG00000160818	GPATCH4	100	100.000	ENSPPAG00000028364	-	100	100.000	Pan_paniscus
ENSG00000160818	GPATCH4	91	93.519	ENSPPRG00000002106	GPATCH4	99	68.633	Panthera_pardus
ENSG00000160818	GPATCH4	95	92.920	ENSPTIG00000006717	GPATCH4	100	78.912	Panthera_tigris_altaica
ENSG00000160818	GPATCH4	100	100.000	ENSPTRG00000001464	GPATCH4	100	100.000	Pan_troglodytes
ENSG00000160818	GPATCH4	100	98.601	ENSPANG00000018543	GPATCH4	100	98.601	Papio_anubis
ENSG00000160818	GPATCH4	95	54.167	ENSPSIG00000011317	GPATCH4	69	54.592	Pelodiscus_sinensis
ENSG00000160818	GPATCH4	95	43.802	ENSPMGG00000019375	-	99	38.298	Periophthalmus_magnuspinnatus
ENSG00000160818	GPATCH4	90	46.667	ENSPMAG00000009175	gpatch4	67	47.959	Petromyzon_marinus
ENSG00000160818	GPATCH4	98	43.750	ENSPFOG00000011835	gpatch4	50	45.918	Poecilia_formosa
ENSG00000160818	GPATCH4	98	41.406	ENSPLAG00000019504	gpatch4	51	45.408	Poecilia_latipinna
ENSG00000160818	GPATCH4	98	43.750	ENSPMEG00000001375	gpatch4	51	45.918	Poecilia_mexicana
ENSG00000160818	GPATCH4	98	40.625	ENSPREG00000017029	gpatch4	55	43.350	Poecilia_reticulata
ENSG00000160818	GPATCH4	95	99.115	ENSPPYG00000000711	-	80	97.207	Pongo_abelii
ENSG00000160818	GPATCH4	98	81.197	ENSPCOG00000013948	-	89	81.890	Propithecus_coquereli
ENSG00000160818	GPATCH4	95	93.805	ENSPCOG00000023130	-	100	87.838	Propithecus_coquereli
ENSG00000160818	GPATCH4	95	85.841	ENSPVAG00000007505	-	87	64.167	Pteropus_vampyrus
ENSG00000160818	GPATCH4	92	47.458	ENSPNYG00000018461	gpatch4	52	46.569	Pundamilia_nyererei
ENSG00000160818	GPATCH4	95	87.611	ENSRNOG00000018969	Gpatch4	84	67.422	Rattus_norvegicus
ENSG00000160818	GPATCH4	100	98.601	ENSRBIG00000005742	GPATCH4	100	98.601	Rhinopithecus_bieti
ENSG00000160818	GPATCH4	100	98.601	ENSRROG00000044157	GPATCH4	100	98.601	Rhinopithecus_roxellana
ENSG00000160818	GPATCH4	95	98.230	ENSSBOG00000024840	GPATCH4	80	88.089	Saimiri_boliviensis_boliviensis
ENSG00000160818	GPATCH4	95	64.655	ENSSHAG00000015436	-	70	62.051	Sarcophilus_harrisii
ENSG00000160818	GPATCH4	88	56.489	ENSSARG00000008606	-	76	53.251	Sorex_araneus
ENSG00000160818	GPATCH4	95	55.833	ENSSPUG00000002674	GPATCH4	66	54.822	Sphenodon_punctatus
ENSG00000160818	GPATCH4	95	93.805	ENSSSCG00000006481	GPATCH4	78	76.857	Sus_scrofa
ENSG00000160818	GPATCH4	95	47.967	ENSTRUG00000020638	-	88	49.194	Takifugu_rubripes
ENSG00000160818	GPATCH4	94	47.107	ENSTNIG00000005156	gpatch4	69	47.264	Tetraodon_nigroviridis
ENSG00000160818	GPATCH4	95	90.265	ENSTTRG00000001113	GPATCH4	88	76.045	Tursiops_truncatus
ENSG00000160818	GPATCH4	95	90.265	ENSUAMG00000013407	GPATCH4	79	73.504	Ursus_americanus
ENSG00000160818	GPATCH4	95	90.265	ENSUMAG00000017797	GPATCH4	79	72.934	Ursus_maritimus
ENSG00000160818	GPATCH4	99	78.814	ENSVVUG00000019904	-	96	78.814	Vulpes_vulpes
ENSG00000160818	GPATCH4	97	85.217	ENSVVUG00000006004	-	85	85.217	Vulpes_vulpes
ENSG00000160818	GPATCH4	97	47.154	ENSXETG00000020397	gpatch4	66	47.236	Xenopus_tropicalis
ENSG00000160818	GPATCH4	98	44.355	ENSXCOG00000003911	gpatch4	54	46.078	Xiphophorus_couchianus
ENSG00000160818	GPATCH4	98	42.188	ENSXMAG00000024520	gpatch4	51	44.898	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	22658674.	HDA	Function
GO:0005515	protein binding	25416956.	IPI	Function