EuRBPDB

Description

Ensembl ID: ENSG00000161618 (Gene tree)
Gene ID: 126133
Gene Symbol: ALDH16A1
Alias: MGC10204
Full Name: aldehyde dehydrogenase 16 family member A1
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 17,882 bases
Position: chr19:49,453,169-49,471,050
Accession: 28114
RBP type: non-canonical RBP
Summary: This gene encodes a member of the aldehyde dehydrogenase superfamily. The family members act on aldehyde substrates and use nicotinamide adenine dinucleotide phosphate (NADP) as a cofactor. This gene is conserved in chimpanzee, dog, cow, mouse, rat, and zebrafish. The protein encoded by this gene interacts with maspardin, a protein that when truncated is responsible for Mast syndrome. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2010]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000455361	ALDH16A1-202	2470	-	ENSP00000410142	751 (aa)	-	Q8IZ83
ENST00000598015	ALDH16A1-206	287	-	-	- (aa)	-	-
ENST00000593417	ALDH16A1-204	2343	-	ENSP00000470160	103 (aa)	-	M0QYY1
ENST00000293350	ALDH16A1-201	3153	XM_011526441	ENSP00000293350	802 (aa)	XP_011524743	Q8IZ83
ENST00000600265	ALDH16A1-208	819	-	ENSP00000469507	163 (aa)	-	M0QY06
ENST00000540132	ALDH16A1-203	2174	-	ENSP00000445088	639 (aa)	-	F5H4B6
ENST00000594549	ALDH16A1-205	681	-	-	- (aa)	-	-
ENST00000599652	ALDH16A1-207	3995	-	-	- (aa)	-	-

Gene Model

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000161618	rs2293010	19	49464815	?	Serum total protein level	29403010	[0.055-0.1] unit increase novel	0.07759538	EFO_0007937

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0016020	membrane	19946888.	HDA	Component
GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	-	IEA	Function
GO:0055114	oxidation-reduction process	-	IEA	Process