EuRBPDB

Description

Ensembl ID: ENSG00000162408 (Gene tree)
Gene ID: 79707
Gene Symbol: NOL9
Alias: FLJ23323|NET6|Grc3
Full Name: nucleolar protein 9
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 33,252 bases
Position: chr1:6,521,347-6,554,598
Accession: 26265
RBP type: non-canonical RBP
Summary: (Nucleolar Protein 9) is a Protein Coding gene. Among its related pathways are Gene Expression and rRNA processing in the nucleus and cytosol. Gene Ontology (GO) annotations related to this gene include RNA binding and polynucleotide 5'-hydroxyl-kinase activity. An important paralog of this gene is CLP1.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30352994	Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture	RIC & Jurkat	2018 Oct 23	Perez-Perri JI	DOI:10.1038/s41467-018-06557-8

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000464665	NOL9-205	731	-	-	- (aa)	-	-
ENST00000462798	NOL9-203	638	-	-	- (aa)	-	-
ENST00000460777	NOL9-202	536	-	-	- (aa)	-	-
ENST00000464383	NOL9-204	835	-	-	- (aa)	-	-
ENST00000377705	NOL9-201	6649	XM_005263493	ENSP00000366934	702 (aa)	XP_005263550	Q5SY16

Gene Model

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000162408	rs9793308	1	6544525	G	Macrophage inflammatory protein 1b levels	27989323	[0.049-0.118] SD units decrease	0.0835	EFO_0008219

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000448	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000460	maturation of 5.8S rRNA	21063389.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	25416956.28330616.	IPI	Function
GO:0005524	ATP binding	21063389.	TAS	Function
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005730	nucleolus	-	IDA	Component
GO:0005730	nucleolus	21063389.	TAS	Component
GO:0006364	rRNA processing	-	TAS	Process
GO:0016020	membrane	19946888.	HDA	Component
GO:0016310	phosphorylation	-	IEA	Process
GO:0045111	intermediate filament cytoskeleton	-	IDA	Component
GO:0051731	polynucleotide 5'-hydroxyl-kinase activity	21063389.	IDA	Function