EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000163319 (Gene tree)
Gene ID
51023
Gene Symbol
MRPS18C
Alias
MRPS18-1|CGI-134|FLJ11146|FLJ22967
Full Name
mitochondrial ribosomal protein S18C
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
13,804 bases
Position
chr4:83,455,932-83,469,735
Accession
16633
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S18P family. The encoded protein is one of three that has significant sequence similarity to bacterial S18 proteins. The primary sequences of the three human mitochondrial S18 proteins are no more closely related to each other than they are to the prokaryotic S18 proteins. Pseudogenes corresponding to this gene are found on chromosomes 8p, 12p, 15q, and 22q. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000295491Ribosomal_S18PF01084.202.1e-2211
ENSP00000427014Ribosomal_S18PF01084.209.3e-1711
ENSP00000427169Ribosomal_S18PF01084.209.6e-1711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000507019MRPS18C-204666-ENSP00000427169114 (aa)-D6RCM2
ENST00000512375MRPS18C-2082482--- (aa)--
ENST00000509571MRPS18C-206442--- (aa)--
ENST00000507349MRPS18C-205350-ENSP0000042693068 (aa)-D6RE70
ENST00000505719MRPS18C-203490-ENSP0000042526892 (aa)-H0Y9W2
ENST00000514581MRPS18C-209301--- (aa)--
ENST00000505525MRPS18C-202442--- (aa)--
ENST00000509970MRPS18C-207855-ENSP00000427014113 (aa)-H0YAG5
ENST00000295491MRPS18C-2011643-ENSP00000295491142 (aa)-Q9Y3D5
Gene Model
Click here to download ENSG00000163319's gene model file
Pathways
Pathway IDPathway NameSource
hsa03010RibosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000163319Extraversion (Psychology)3.601e-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000163319's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000163319MRPS18C10079.577ENSAMEG00000004915MRPS18C10079.577Ailuropoda_melanoleuca
ENSG00000163319MRPS18C10081.944ENSANAG00000028055-10081.944Aotus_nancymaae
ENSG00000163319MRPS18C9981.513ENSANAG00000025323-9481.513Aotus_nancymaae
ENSG00000163319MRPS18C10071.930ENSBTAG00000049836-10071.930Bos_taurus
ENSG00000163319MRPS18C10081.250ENSBTAG00000018155MRPS18C10081.250Bos_taurus
ENSG00000163319MRPS18C10093.103ENSCJAG00000042247MRPS18C10093.103Callithrix_jacchus
ENSG00000163319MRPS18C10082.639ENSCAFG00020010491MRPS18C10082.639Canis_lupus_dingo
ENSG00000163319MRPS18C10073.239ENSCHIG00000022740-10073.239Capra_hircus
ENSG00000163319MRPS18C9967.606ENSCHIG00000018805-9967.606Capra_hircus
ENSG00000163319MRPS18C8365.385ENSCHIG00000019359-9869.444Capra_hircus
ENSG00000163319MRPS18C9183.206ENSCHIG00000004461-9183.206Capra_hircus
ENSG00000163319MRPS18C10067.544ENSCHIG00000016551-10067.544Capra_hircus
ENSG00000163319MRPS18C10085.417ENSTSYG00000012924MRPS18C10085.417Carlito_syrichta
ENSG00000163319MRPS18C10084.028ENSCPOG00000009198MRPS18C10084.028Cavia_porcellus
ENSG00000163319MRPS18C9981.560ENSCCAG00000025155-9581.560Cebus_capucinus
ENSG00000163319MRPS18C10093.103ENSCCAG00000026577-10093.103Cebus_capucinus
ENSG00000163319MRPS18C10090.972ENSCCAG00000019347-10090.972Cebus_capucinus
ENSG00000163319MRPS18C10080.556ENSCCAG00000028283-10080.556Cebus_capucinus
ENSG00000163319MRPS18C10095.690ENSCATG00000040697MRPS18C10095.690Cercocebus_atys
ENSG00000163319MRPS18C10085.417ENSCLAG00000017397-10085.417Chinchilla_lanigera
ENSG00000163319MRPS18C10083.562ENSCLAG00000008205-10083.562Chinchilla_lanigera
ENSG00000163319MRPS18C10079.167ENSCANG00000041165-10079.167Colobus_angolensis_palliatus
ENSG00000163319MRPS18C10095.690ENSCANG00000038907MRPS18C10095.690Colobus_angolensis_palliatus
ENSG00000163319MRPS18C9986.087ENSCANG00000037347-9786.087Colobus_angolensis_palliatus
ENSG00000163319MRPS18C10084.028ENSCGRG00001000103Mrps18c10084.028Cricetulus_griseus_chok1gshd
ENSG00000163319MRPS18C10084.028ENSCGRG00000002192Mrps18c10084.028Cricetulus_griseus_crigri
ENSG00000163319MRPS18C9983.099ENSDORG00000012749Mrps18c10083.099Dipodomys_ordii
ENSG00000163319MRPS18C10057.746ENSETEG00000012223-10057.746Echinops_telfairi
ENSG00000163319MRPS18C10086.111ENSEASG00005013234MRPS18C10086.111Equus_asinus_asinus
ENSG00000163319MRPS18C10086.806ENSECAG00000020387MRPS18C10086.806Equus_caballus
ENSG00000163319MRPS18C10061.111ENSEEUG00000003504MRPS18C9961.111Erinaceus_europaeus
ENSG00000163319MRPS18C10083.333ENSFCAG00000042464MRPS18C10083.333Felis_catus
ENSG00000163319MRPS18C10075.352ENSFDAG00000008778-10075.352Fukomys_damarensis
ENSG00000163319MRPS18C10085.915ENSFDAG00000000250-10085.915Fukomys_damarensis
ENSG00000163319MRPS18C10083.803ENSGGOG00000008603MRPS18C10083.803Gorilla_gorilla
ENSG00000163319MRPS18C10086.842ENSGGOG00000040785-10086.842Gorilla_gorilla
ENSG00000163319MRPS18C10077.586ENSGGOG00000037903-10077.586Gorilla_gorilla
ENSG00000163319MRPS18C10077.778ENSHGLG00000012671-9877.778Heterocephalus_glaber_female
ENSG00000163319MRPS18C10079.861ENSHGLG00000020134-10079.861Heterocephalus_glaber_female
ENSG00000163319MRPS18C10082.877ENSHGLG00000002953-10082.877Heterocephalus_glaber_female
ENSG00000163319MRPS18C10077.778ENSHGLG00100015568-9877.778Heterocephalus_glaber_male
ENSG00000163319MRPS18C10082.877ENSHGLG00100016235-10082.877Heterocephalus_glaber_male
ENSG00000163319MRPS18C10079.861ENSHGLG00100019678-10079.861Heterocephalus_glaber_male
ENSG00000163319MRPS18C10084.722ENSSTOG00000007989MRPS18C10084.722Ictidomys_tridecemlineatus
ENSG00000163319MRPS18C10071.053ENSJJAG00000022437Mrps18c10071.053Jaculus_jaculus
ENSG00000163319MRPS18C10084.722ENSLAFG00000001059MRPS18C10084.722Loxodonta_africana
ENSG00000163319MRPS18C10093.966ENSMFAG00000003991MRPS18C10093.966Macaca_fascicularis
ENSG00000163319MRPS18C10079.167ENSMFAG00000041276-10079.167Macaca_fascicularis
ENSG00000163319MRPS18C10081.944ENSMMUG00000039146-10081.944Macaca_mulatta
ENSG00000163319MRPS18C10083.333ENSMMUG00000048717-10083.333Macaca_mulatta
ENSG00000163319MRPS18C10093.966ENSMMUG00000015353MRPS18C10093.966Macaca_mulatta
ENSG00000163319MRPS18C10093.966ENSMNEG00000043663MRPS18C10093.966Macaca_nemestrina
ENSG00000163319MRPS18C10075.000ENSMNEG00000018700-10075.000Macaca_nemestrina
ENSG00000163319MRPS18C10095.690ENSMLEG00000038884MRPS18C10095.690Mandrillus_leucophaeus
ENSG00000163319MRPS18C10079.487ENSMICG00000037615-10079.487Microcebus_murinus
ENSG00000163319MRPS18C10084.483ENSMICG00000032609-10084.483Microcebus_murinus
ENSG00000163319MRPS18C10081.250ENSMOCG00000015591-10081.250Microtus_ochrogaster
ENSG00000163319MRPS18C10079.167ENSMOCG00000009898-10079.167Microtus_ochrogaster
ENSG00000163319MRPS18C9772.222ENSMODG00000020773MRPS18C9972.222Monodelphis_domestica
ENSG00000163319MRPS18C10078.767MGP_CAROLIEiJ_G0027458Mrps18c10078.767Mus_caroli
ENSG00000163319MRPS18C10078.082ENSMUSG00000016833Mrps18c10078.082Mus_musculus
ENSG00000163319MRPS18C10080.137MGP_PahariEiJ_G0017236Mrps18c10080.137Mus_pahari
ENSG00000163319MRPS18C8377.049MGP_SPRETEiJ_G0028455Mrps18c9377.049Mus_spretus
ENSG00000163319MRPS18C10078.472ENSMLUG00000017057MRPS18C10078.472Myotis_lucifugus
ENSG00000163319MRPS18C8786.508ENSNGAG00000015980Mrps18c10083.333Nannospalax_galili
ENSG00000163319MRPS18C10095.139ENSNLEG00000009119MRPS18C10095.139Nomascus_leucogenys
ENSG00000163319MRPS18C10088.194ENSNLEG00000018188-10088.194Nomascus_leucogenys
ENSG00000163319MRPS18C8375.000ENSOPRG00000004113MRPS18C6881.443Ochotona_princeps
ENSG00000163319MRPS18C10084.028ENSODEG00000020349-10084.028Octodon_degus
ENSG00000163319MRPS18C10082.192ENSODEG00000007599-10082.192Octodon_degus
ENSG00000163319MRPS18C10081.250ENSOARG00000002770MRPS18C10081.250Ovis_aries
ENSG00000163319MRPS18C10078.448ENSPPAG00000037400-10078.448Pan_paniscus
ENSG00000163319MRPS18C100100.000ENSPPAG00000037122MRPS18C100100.000Pan_paniscus
ENSG00000163319MRPS18C10084.028ENSPPRG00000011089MRPS18C10084.028Panthera_pardus
ENSG00000163319MRPS18C10083.333ENSPTIG00000021242MRPS18C10083.333Panthera_tigris_altaica
ENSG00000163319MRPS18C10077.193ENSPTRG00000047058-10077.193Pan_troglodytes
ENSG00000163319MRPS18C100100.000ENSPTRG00000016233MRPS18C100100.000Pan_troglodytes
ENSG00000163319MRPS18C10081.944ENSPANG00000034202-10081.944Papio_anubis
ENSG00000163319MRPS18C10093.966ENSPANG00000033931MRPS18C10093.966Papio_anubis
ENSG00000163319MRPS18C10082.639ENSPEMG00000008390Mrps18c10082.639Peromyscus_maniculatus_bairdii
ENSG00000163319MRPS18C7090.909ENSPCIG00000019737-9790.909Phascolarctos_cinereus
ENSG00000163319MRPS18C9864.539ENSPCIG00000000097-9964.539Phascolarctos_cinereus
ENSG00000163319MRPS18C9276.692ENSPCIG00000005376-9476.692Phascolarctos_cinereus
ENSG00000163319MRPS18C9990.845ENSPPYG00000025835-9990.845Pongo_abelii
ENSG00000163319MRPS18C10096.528ENSPPYG00000025867MRPS18C10096.528Pongo_abelii
ENSG00000163319MRPS18C10080.556ENSPCAG00000004975MRPS18C10080.556Procavia_capensis
ENSG00000163319MRPS18C10084.722ENSPCOG00000017634MRPS18C10084.722Propithecus_coquereli
ENSG00000163319MRPS18C8371.795ENSPVAG00000006439MRPS18C10077.778Pteropus_vampyrus
ENSG00000163319MRPS18C10076.027ENSRNOG00000002178Mrps18c10076.027Rattus_norvegicus
ENSG00000163319MRPS18C10078.070ENSRBIG00000031637-10078.070Rhinopithecus_bieti
ENSG00000163319MRPS18C10083.803ENSRBIG00000035023-10083.803Rhinopithecus_bieti
ENSG00000163319MRPS18C10095.690ENSRBIG00000041685MRPS18C10095.690Rhinopithecus_bieti
ENSG00000163319MRPS18C10095.690ENSRROG00000044334MRPS18C10095.690Rhinopithecus_roxellana
ENSG00000163319MRPS18C10083.803ENSRROG00000033834-10083.803Rhinopithecus_roxellana
ENSG00000163319MRPS18C10077.193ENSRROG00000030722-10077.193Rhinopithecus_roxellana
ENSG00000163319MRPS18C9985.315ENSSBOG00000022205-9285.315Saimiri_boliviensis_boliviensis
ENSG00000163319MRPS18C9576.642ENSSBOG00000032292-9876.642Saimiri_boliviensis_boliviensis
ENSG00000163319MRPS18C10092.361ENSSBOG00000027568-10092.361Saimiri_boliviensis_boliviensis
ENSG00000163319MRPS18C10074.648ENSSBOG00000029234-10074.648Saimiri_boliviensis_boliviensis
ENSG00000163319MRPS18C9275.735ENSSHAG00000007084MRPS18C9475.735Sarcophilus_harrisii
ENSG00000163319MRPS18C10084.028ENSSSCG00000038042MRPS18C10084.028Sus_scrofa
ENSG00000163319MRPS18C10082.639ENSTBEG00000012505MRPS18C10082.639Tupaia_belangeri
ENSG00000163319MRPS18C10084.722ENSTTRG00000004897MRPS18C10084.722Tursiops_truncatus
ENSG00000163319MRPS18C10087.500ENSUAMG00000012878MRPS18C10087.500Ursus_americanus
ENSG00000163319MRPS18C10087.500ENSUMAG00000008829MRPS18C10087.500Ursus_maritimus
ENSG00000163319MRPS18C10081.944ENSVPAG00000011358MRPS18C10081.944Vicugna_pacos
ENSG00000163319MRPS18C10083.333ENSVVUG00000015672MRPS18C10083.333Vulpes_vulpes
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003735structural constituent of ribosome21873635.IBAFunction
GO:0003735structural constituent of ribosome11279123.NASFunction
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005763mitochondrial small ribosomal subunit21873635.IBAComponent
GO:0005763mitochondrial small ribosomal subunit11279123.25838379.IDAComponent
GO:0006412translation11279123.NASProcess
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess
GO:0070181small ribosomal subunit rRNA binding21873635.IBAFunction

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