EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000163510 (Gene tree)
Gene ID
57703
Gene Symbol
CWC22
Alias
KIAA1604|EIF4GL|fSAPb|NCM
Full Name
CWC22 spliceosome associated protein homolog
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
62,422 bases
Position
chr2:179,944,876-180,007,297
Accession
29322
RBP type
canonical RBP
Summary
(CWC22 Spliceosome Associated Protein Homolog) is a Protein Coding gene. Diseases associated with CWC22 include Meningeal Melanomatosis and Melanomatosis. Among its related pathways are mRNA Splicing - Major Pathway and Gene Expression. Gene Ontology (GO) annotations related to this gene include RNA binding and binding. An important paralog of this gene is NOM1.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000384159MA3PF02847.171.4e-2311
ENSP00000387006MA3PF02847.171.9e-2311
ENSP00000384159MIF4GPF02854.193.3e-1211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
24218557Crystal structure of the human eIF4AIII-CWC22 complex shows how a DEAD-box protein is inhibited by a MIF4G domain.Proc Natl Acad Sci U S A2013 Nov 26Buchwald Gdoi: 10.1073/pnas.1314684110
22961380Human CWC22 escorts the helicase eIF4AIII to spliceosomes and promotes exon junction complex assembly.Nat Struct Mol Biol2012 OctBarbosa Idoi: 10.1038/nsmb.2380
28919079Structure of an Intron Lariat Spliceosome from Saccharomyces cerevisiae.Cell2017 Sep 21Wan Rdoi: 10.1016/j.cell.2017.08.029
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000404136CWC22-2012392-ENSP00000384159745 (aa)-B7WP74
ENST00000410053CWC22-2023280XM_005246726ENSP00000387006908 (aa)XP_005246783Q9HCG8
Gene Model
Click here to download ENSG00000163510's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000163510Body Height7.65346517689356E-517903300
ENSG00000163510Carotid Arteries4.88629715162291E-517903303
ENSG00000163510Asthma3.858943E-0511022011
ENSG00000163510Blood Pressure4.861e-00519060910
ENSG00000163510Erythrocyte Indices4.5890000E-005-
ENSG00000163510Hematocrit4.3020000E-005-
ENSG00000163510Platelet Function Tests1.5493300E-005-
ENSG00000163510Platelet Function Tests2.7000000E-006-
ENSG00000163510Platelet Function Tests4.1700000E-006-
ENSG00000163510Platelet Function Tests4.6400000E-006-
ENSG00000163510Platelet Function Tests8.2100000E-006-
ENSG00000163510Platelet Function Tests2.0400000E-006-
ENSG00000163510Platelet Function Tests3.0500000E-006-
ENSG00000163510Platelet Function Tests9.1109312E-007-
ENSG00000163510Child Development Disorders, Pervasive2.1315000E-005-
ENSG00000163510Child Development Disorders, Pervasive1.3816000E-005-
ENSG00000163510Child Development Disorders, Pervasive2.8867000E-005-
ENSG00000163510Child Development Disorders, Pervasive1.7376000E-005-
ENSG00000163510Child Development Disorders, Pervasive3.5169600E-005-
ENSG00000163510Child Development Disorders, Pervasive2.7009600E-005-
ENSG00000163510C-Reactive Protein5.0970000E-005-
ENSG00000163510Vitamin B 122.3020000E-005-
ENSG00000163510Schizophrenia7E-626198764
ENSG00000163510Saccades6E-625387707
ENSG00000163510Rectal Neoplasms4E-625866641
ENSG00000163510Survival Rate4E-625866641
ENSG00000163510Body Mass Index4E-825673413
ENSG00000163510Body Mass Index1E-825673413
ENSG00000163510Obesity2E-621552555
ENSG00000163510Lupus Erythematosus, Systemic2E-621408207
ENSG00000163510Body Mass Index5E-925673413
ENSG00000163510Prostatic Neoplasms3E-622219177
ENSG00000163510Attention Deficit Disorder with Hyperactivity1E-623453885
ENSG00000163510Bipolar Disorder1E-623453885
ENSG00000163510Child Development Disorders, Pervasive1E-623453885
ENSG00000163510Depressive Disorder1E-623453885
ENSG00000163510Schizophrenia1E-623453885
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000163510rs126932172179977187GSchizophrenia26198764[NR]1.0752687EFO_0000692
ENSG00000163510rs38457022179983761ASchizophrenia28991256[1.04-1.08]1.063EFO_0000692
ENSG00000163510rs38457022179983761ASchizophrenia30285260[1.04-1.08]1.058EFO_0000692
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000163510's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000163510CWC227778.893ENSAPOG00000004200cwc226579.203Acanthochromis_polyacanthus
ENSG00000163510CWC229994.489ENSAMEG00000011004CWC2210092.511Ailuropoda_melanoleuca
ENSG00000163510CWC227981.864ENSACIG00000020055cwc227079.542Amphilophus_citrinellus
ENSG00000163510CWC227881.834ENSAPEG00000002673cwc225882.322Amphiprion_percula
ENSG00000163510CWC227882.526ENSATEG00000005176cwc225684.099Anabas_testudineus
ENSG00000163510CWC228983.609ENSACAG00000009438CWC2210069.750Anolis_carolinensis
ENSG00000163510CWC2210097.047ENSANAG00000028324CWC2210094.053Aotus_nancymaae
ENSG00000163510CWC227881.538ENSACLG00000025447cwc228084.381Astatotilapia_calliptera
ENSG00000163510CWC225888.739ENSAMXG00000014957cwc226681.679Astyanax_mexicanus
ENSG00000163510CWC229994.758ENSBTAG00000021726CWC229990.419Bos_taurus
ENSG00000163510CWC227255.064WBGene00002957let-8586354.561Caenorhabditis_elegans
ENSG00000163510CWC229995.833ENSCAFG00000014160CWC229993.282Canis_familiaris
ENSG00000163510CWC229795.972ENSCAFG00020007223CWC229795.894Canis_lupus_dingo
ENSG00000163510CWC229994.892ENSCHIG00000017150CWC229991.079Capra_hircus
ENSG00000163510CWC229486.752ENSTSYG00000035591-9979.538Carlito_syrichta
ENSG00000163510CWC2210095.436ENSTSYG00000000218-10093.833Carlito_syrichta
ENSG00000163510CWC229483.381ENSTSYG00000026635-9681.301Carlito_syrichta
ENSG00000163510CWC229783.196ENSTSYG00000028686-9981.576Carlito_syrichta
ENSG00000163510CWC228988.351ENSCAPG00000002064CWC229684.211Cavia_aperea
ENSG00000163510CWC229991.398ENSCPOG00000007492CWC2210087.361Cavia_porcellus
ENSG00000163510CWC2210090.604ENSCCAG00000021239CWC2210089.758Cebus_capucinus
ENSG00000163510CWC2210098.792ENSCATG00000035788CWC2210097.577Cercocebus_atys
ENSG00000163510CWC229993.011ENSCLAG00000011118CWC2210086.475Chinchilla_lanigera
ENSG00000163510CWC2210098.658ENSCSAG00000012925CWC2210097.357Chlorocebus_sabaeus
ENSG00000163510CWC228986.165ENSCHOG00000006362CWC228886.165Choloepus_hoffmanni
ENSG00000163510CWC228984.812ENSCPBG00000001765CWC2210074.536Chrysemys_picta_bellii
ENSG00000163510CWC227866.382ENSCING00000008865-7566.837Ciona_intestinalis
ENSG00000163510CWC227367.582ENSCSAVG00000003537-8372.273Ciona_savignyi
ENSG00000163510CWC2210098.792ENSCANG00000013762CWC2210096.806Colobus_angolensis_palliatus
ENSG00000163510CWC229992.162ENSCGRG00001017005-10087.019Cricetulus_griseus_chok1gshd
ENSG00000163510CWC229992.162ENSCGRG00000001934-10087.019Cricetulus_griseus_crigri
ENSG00000163510CWC227574.778ENSCSEG00000005257cwc226273.402Cynoglossus_semilaevis
ENSG00000163510CWC227882.180ENSCVAG00000009836cwc226177.708Cyprinodon_variegatus
ENSG00000163510CWC227882.131ENSDARG00000014008cwc228564.877Danio_rerio
ENSG00000163510CWC228967.814ENSDNOG00000032640-9067.216Dasypus_novemcinctus
ENSG00000163510CWC229990.897ENSDNOG00000003020-10089.243Dasypus_novemcinctus
ENSG00000163510CWC229992.558ENSDORG00000011483-9989.258Dipodomys_ordii
ENSG00000163510CWC228983.483ENSETEG00000013355CWC229383.483Echinops_telfairi
ENSG00000163510CWC225459.804ENSEBUG00000005724cwc225559.709Eptatretus_burgeri
ENSG00000163510CWC229995.161ENSEASG00005022287CWC229993.282Equus_asinus_asinus
ENSG00000163510CWC229995.504ENSECAG00000010769CWC229993.502Equus_caballus
ENSG00000163510CWC228093.286ENSEEUG00000005336CWC227893.286Erinaceus_europaeus
ENSG00000163510CWC227982.003ENSELUG00000010536cwc229277.797Esox_lucius
ENSG00000163510CWC229995.296ENSFCAG00000018982CWC229992.070Felis_catus
ENSG00000163510CWC228981.791ENSFALG00000003495CWC229970.479Ficedula_albicollis
ENSG00000163510CWC229993.145ENSFDAG00000010857CWC2210089.024Fukomys_damarensis
ENSG00000163510CWC227383.729ENSFHEG00000009620cwc225881.707Fundulus_heteroclitus
ENSG00000163510CWC228180.200ENSGMOG00000009084cwc229480.640Gadus_morhua
ENSG00000163510CWC228980.896ENSGALG00000009001CWC2210069.542Gallus_gallus
ENSG00000163510CWC227484.364ENSGAFG00000021155cwc226684.936Gambusia_affinis
ENSG00000163510CWC227881.315ENSGACG00000002071cwc227276.258Gasterosteus_aculeatus
ENSG00000163510CWC2210073.224ENSGAGG00000013471CWC2210073.224Gopherus_agassizii
ENSG00000163510CWC22100100.000ENSGGOG00000012484CWC2210099.229Gorilla_gorilla
ENSG00000163510CWC227681.371ENSHBUG00000010504cwc226975.000Haplochromis_burtoni
ENSG00000163510CWC229992.742ENSHGLG00000005692CWC2210088.803Heterocephalus_glaber_female
ENSG00000163510CWC229992.876ENSHGLG00100016497CWC2210088.914Heterocephalus_glaber_male
ENSG00000163510CWC227582.616ENSHCOG00000004206cwc227476.518Hippocampus_comes
ENSG00000163510CWC227486.957ENSIPUG00000005831cwc227075.882Ictalurus_punctatus
ENSG00000163510CWC229995.699ENSSTOG00000009788CWC2210092.070Ictidomys_tridecemlineatus
ENSG00000163510CWC229991.644ENSJJAG00000017012-10086.139Jaculus_jaculus
ENSG00000163510CWC227980.574ENSKMAG00000005228cwc225684.505Kryptolebias_marmoratus
ENSG00000163510CWC227880.756ENSLBEG00000020518cwc226579.396Labrus_bergylta
ENSG00000163510CWC228279.479ENSLACG00000005916CWC226969.872Latimeria_chalumnae
ENSG00000163510CWC228976.358ENSLOCG00000006456cwc229465.668Lepisosteus_oculatus
ENSG00000163510CWC229993.076ENSLAFG00000014802CWC2210091.366Loxodonta_africana
ENSG00000163510CWC2210098.523ENSMFAG00000000590CWC229997.524Macaca_fascicularis
ENSG00000163510CWC2210093.826ENSMMUG00000020642CWC2210093.392Macaca_mulatta
ENSG00000163510CWC2210098.523ENSMNEG00000034567CWC2210097.357Macaca_nemestrina
ENSG00000163510CWC2210098.792ENSMLEG00000042344CWC2210097.687Mandrillus_leucophaeus
ENSG00000163510CWC228179.934ENSMAMG00000018888cwc226374.773Mastacembelus_armatus
ENSG00000163510CWC227881.538ENSMZEG00005021449cwc225584.685Maylandia_zebra
ENSG00000163510CWC228385.203ENSMGAG00000009220CWC229970.300Meleagris_gallopavo
ENSG00000163510CWC227391.501ENSMAUG00000016154-9585.319Mesocricetus_auratus
ENSG00000163510CWC229991.156ENSMICG00000016919CWC229990.545Microcebus_murinus
ENSG00000163510CWC228573.940ENSMMOG00000019720cwc229571.324Mola_mola
ENSG00000163510CWC227483.063ENSMODG00000020117-10083.063Monodelphis_domestica
ENSG00000163510CWC227483.002ENSMODG00000003711-10083.002Monodelphis_domestica
ENSG00000163510CWC2210080.351ENSMODG00000010233-10079.912Monodelphis_domestica
ENSG00000163510CWC229987.802MGP_CAROLIEiJ_G0023696-9093.103Mus_caroli
ENSG00000163510CWC229986.818ENSMUSG00000094336Gm136939982.734Mus_musculus
ENSG00000163510CWC229986.818ENSMUSG00000096484Gm136969982.734Mus_musculus
ENSG00000163510CWC229986.818ENSMUSG00000096337Gm136949982.734Mus_musculus
ENSG00000163510CWC229987.802ENSMUSG00000027014Cwc229292.954Mus_musculus
ENSG00000163510CWC229986.818ENSMUSG00000094125Gm136989982.734Mus_musculus
ENSG00000163510CWC229986.818ENSMUSG00000096729Gm136959982.614Mus_musculus
ENSG00000163510CWC229986.818ENSMUSG00000079247Gm136919982.734Mus_musculus
ENSG00000163510CWC229986.818ENSMUSG00000095824Gm136979982.734Mus_musculus
ENSG00000163510CWC229988.606MGP_PahariEiJ_G0025147-9093.853Mus_pahari
ENSG00000163510CWC229995.161ENSMPUG00000002432CWC229990.088Mustela_putorius_furo
ENSG00000163510CWC229992.070ENSMLUG00000024966-9791.580Myotis_lucifugus
ENSG00000163510CWC228795.659ENSMLUG00000013437-9892.710Myotis_lucifugus
ENSG00000163510CWC229881.004ENSNGAG00000013881-9693.813Nannospalax_galili
ENSG00000163510CWC225172.324ENSNBRG00000019380cwc227584.615Neolamprologus_brichardi
ENSG00000163510CWC2210098.658ENSNLEG00000006248CWC2210098.128Nomascus_leucogenys
ENSG00000163510CWC227685.258ENSMEUG00000011026CWC229885.379Notamacropus_eugenii
ENSG00000163510CWC228392.998ENSOPRG00000007844CWC228589.050Ochotona_princeps
ENSG00000163510CWC227389.574ENSODEG00000005934-8389.407Octodon_degus
ENSG00000163510CWC227795.331ENSODEG00000007673CWC229294.961Octodon_degus
ENSG00000163510CWC229982.172ENSOANG00000008649CWC2210080.234Ornithorhynchus_anatinus
ENSG00000163510CWC228278.140ENSORLG00000010538cwc225885.018Oryzias_latipes
ENSG00000163510CWC228277.488ENSORLG00020015117cwc225885.018Oryzias_latipes_hni
ENSG00000163510CWC228278.339ENSORLG00015018073cwc226875.651Oryzias_latipes_hsok
ENSG00000163510CWC227882.038ENSOMEG00000015199cwc226281.583Oryzias_melastigma
ENSG00000163510CWC229995.115ENSOGAG00000015287CWC229992.120Otolemur_garnettii
ENSG00000163510CWC229994.497ENSOARG00000016905CWC229990.649Ovis_aries
ENSG00000163510CWC2210097.987ENSPPAG00000027833CWC2210097.797Pan_paniscus
ENSG00000163510CWC229995.296ENSPPRG00000001389CWC229992.291Panthera_pardus
ENSG00000163510CWC229995.296ENSPTIG00000019139CWC229992.291Panthera_tigris_altaica
ENSG00000163510CWC22100100.000ENSPTRG00000012698CWC2210099.449Pan_troglodytes
ENSG00000163510CWC2210098.792ENSPANG00000018976CWC2210097.577Papio_anubis
ENSG00000163510CWC227882.960ENSPKIG00000021346cwc226781.217Paramormyrops_kingsleyae
ENSG00000163510CWC2210073.478ENSPSIG00000008632CWC2210073.690Pelodiscus_sinensis
ENSG00000163510CWC227775.000ENSPMGG00000020129cwc225876.573Periophthalmus_magnuspinnatus
ENSG00000163510CWC229780.544ENSPEMG00000023936-9976.290Peromyscus_maniculatus_bairdii
ENSG00000163510CWC228374.367ENSPMAG00000005914cwc228960.964Petromyzon_marinus
ENSG00000163510CWC228990.813ENSPCIG00000009903-9190.541Phascolarctos_cinereus
ENSG00000163510CWC227584.919ENSPFOG00000015025cwc227484.919Poecilia_formosa
ENSG00000163510CWC227484.505ENSPLAG00000021405cwc226375.647Poecilia_latipinna
ENSG00000163510CWC227584.532ENSPMEG00000007850cwc227467.710Poecilia_mexicana
ENSG00000163510CWC227580.466ENSPREG00000004312cwc226679.754Poecilia_reticulata
ENSG00000163510CWC2210099.597ENSPPYG00000012986CWC2210099.119Pongo_abelii
ENSG00000163510CWC229992.779ENSPCAG00000011882CWC229985.078Procavia_capensis
ENSG00000163510CWC229194.639ENSPCOG00000010195CWC2210093.264Propithecus_coquereli
ENSG00000163510CWC229993.952ENSPVAG00000011497CWC229991.960Pteropus_vampyrus
ENSG00000163510CWC227878.632ENSPNYG00000010435cwc228081.329Pundamilia_nyererei
ENSG00000163510CWC229884.952ENSRNOG00000038322LOC5006849979.800Rattus_norvegicus
ENSG00000163510CWC229885.226ENSRNOG00000012651Cwc229980.133Rattus_norvegicus
ENSG00000163510CWC2210091.689ENSRBIG00000036751CWC229990.819Rhinopithecus_bieti
ENSG00000163510CWC2210098.792ENSRROG00000037520CWC2210097.357Rhinopithecus_roxellana
ENSG00000163510CWC229994.892ENSSBOG00000021683CWC2210093.605Saimiri_boliviensis_boliviensis
ENSG00000163510CWC228973.645ENSSHAG00000004040-9073.565Sarcophilus_harrisii
ENSG00000163510CWC229779.728ENSSHAG00000016596-9979.049Sarcophilus_harrisii
ENSG00000163510CWC226984.540ENSSFOG00015010559cwc229066.974Scleropages_formosus
ENSG00000163510CWC227878.374ENSSMAG00000004724cwc226572.012Scophthalmus_maximus
ENSG00000163510CWC227980.880ENSSDUG00000010656cwc226475.878Seriola_dumerili
ENSG00000163510CWC227483.784ENSSLDG00000023157cwc228281.693Seriola_lalandi_dorsalis
ENSG00000163510CWC228383.636ENSSARG00000013596-7783.562Sorex_araneus
ENSG00000163510CWC229670.468ENSSPUG00000006395CWC229970.696Sphenodon_punctatus
ENSG00000163510CWC227881.834ENSSPAG00000008746cwc225585.145Stegastes_partitus
ENSG00000163510CWC229994.236ENSSSCG00000016008CWC229989.890Sus_scrofa
ENSG00000163510CWC228783.410ENSTGUG00000009340-10071.234Taeniopygia_guttata
ENSG00000163510CWC228477.047ENSTRUG00000014411cwc226082.540Takifugu_rubripes
ENSG00000163510CWC227579.860ENSTNIG00000005074cwc228773.353Tetraodon_nigroviridis
ENSG00000163510CWC2210075.220ENSTBEG00000014539CWC2210075.220Tupaia_belangeri
ENSG00000163510CWC229991.129ENSTTRG00000012142CWC229989.537Tursiops_truncatus
ENSG00000163510CWC229995.174ENSUAMG00000010342CWC229994.987Ursus_americanus
ENSG00000163510CWC229995.565ENSUMAG00000016730CWC229993.172Ursus_maritimus
ENSG00000163510CWC228996.241ENSVPAG00000008565CWC227396.241Vicugna_pacos
ENSG00000163510CWC229995.430ENSVVUG00000009738CWC229992.952Vulpes_vulpes
ENSG00000163510CWC2210074.211ENSXETG00000014099cwc2210074.202Xenopus_tropicalis
ENSG00000163510CWC227484.144ENSXMAG00000013201cwc228065.042Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome11991638.ICProcess
GO:0000398mRNA splicing, via spliceosome29360106.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding11991638.IDAFunction
GO:0005515protein binding22365833.22961380.23084401.23236153.29997244.IPIFunction
GO:0005634nucleus29360106.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005681spliceosomal complex11991638.IDAComponent
GO:0005829cytosol-IDAComponent
GO:0016607nuclear speck22961380.IDAComponent
GO:0048024regulation of mRNA splicing, via spliceosome11991638.ICProcess
GO:0071005U2-type precatalytic spliceosome29360106.IDAComponent
GO:0071006U2-type catalytic step 1 spliceosome21873635.IBAComponent
GO:0071006U2-type catalytic step 1 spliceosome29301961.IDAComponent
GO:0071007U2-type catalytic step 2 spliceosome28076346.IDAComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent
GO:0071013catalytic step 2 spliceosome11991638.22961380.IDAComponent

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