EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000164609 (Gene tree)
Gene ID
10569
Gene Symbol
SLU7
Alias
9G8
Full Name
SLU7 homolog, splicing factor
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
20,071 bases
Position
chr5:160,401,641-160,421,711
Accession
16939
RBP type
canonical RBP
Summary
Pre-mRNA splicing occurs in two sequential transesterification steps. The protein encoded by this gene is a splicing factor that has been found to be essential during the second catalytic step in the pre-mRNA splicing process. It associates with the spliceosome and contains a zinc knuckle motif that is found in other splicing factors and is involved in protein-nucleic acid and protein-protein interactions. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000297151Slu7PF11708.88.1e-10811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
1427075An essential splicing factor, SLU7, mediates 3' splice site choice in yeast.Genes Dev1992 NovFrank D-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000521826SLU7-208568-ENSP00000428943143 (aa)-E5RK41
ENST00000523219SLU7-209600--- (aa)--
ENST00000521190SLU7-206577--- (aa)--
ENST00000520841SLU7-205680--- (aa)--
ENST00000518268SLU7-202691--- (aa)--
ENST00000521320SLU7-207492--- (aa)--
ENST00000297151SLU7-2013793XM_005265793ENSP00000297151586 (aa)XP_011532720O95391
ENST00000519349SLU7-203577-ENSP00000429990124 (aa)-E5RGM7
ENST00000520664SLU7-204807-ENSP00000428362101 (aa)-A0A0C4DGD2
Gene Model
Click here to download ENSG00000164609's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000164609rs29101955160417268CCommon carotid intima-media thickness29206233[NR] unit increase0.02179EFO_0004860
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000164609's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000164609SLU79777.408ENSAPOG00000011660slu710075.939Acanthochromis_polyacanthus
ENSG00000164609SLU710097.611ENSAMEG00000006613SLU710097.611Ailuropoda_melanoleuca
ENSG00000164609SLU79779.433ENSACIG00000005652slu79974.055Amphilophus_citrinellus
ENSG00000164609SLU79876.379ENSAPEG00000018095slu79877.583Amphiprion_percula
ENSG00000164609SLU79876.736ENSATEG00000006357slu79976.736Anabas_testudineus
ENSG00000164609SLU79985.495ENSAPLG00000008133SLU79985.495Anas_platyrhynchos
ENSG00000164609SLU710085.374ENSACAG00000003144SLU710085.204Anolis_carolinensis
ENSG00000164609SLU7100100.000ENSANAG00000028320SLU710099.147Aotus_nancymaae
ENSG00000164609SLU79776.592ENSACLG00000007273slu79876.936Astatotilapia_calliptera
ENSG00000164609SLU79778.131ENSAMXG00000002404slu79777.544Astyanax_mexicanus
ENSG00000164609SLU710097.440ENSBTAG00000008457SLU710097.440Bos_taurus
ENSG00000164609SLU78255.085WBGene00010629K07C5.66549.324Caenorhabditis_elegans
ENSG00000164609SLU710099.194ENSCJAG00000019132SLU710098.294Callithrix_jacchus
ENSG00000164609SLU710098.294ENSCAFG00000017268SLU79398.294Canis_familiaris
ENSG00000164609SLU710098.294ENSCAFG00020001456SLU79398.294Canis_lupus_dingo
ENSG00000164609SLU710097.440ENSCHIG00000013793SLU710097.440Capra_hircus
ENSG00000164609SLU710097.440ENSTSYG00000000157SLU710097.440Carlito_syrichta
ENSG00000164609SLU710095.804ENSCAPG00000015711SLU710089.761Cavia_aperea
ENSG00000164609SLU710095.804ENSCPOG00000004484SLU710094.881Cavia_porcellus
ENSG00000164609SLU710098.976ENSCCAG00000035808SLU79998.976Cebus_capucinus
ENSG00000164609SLU7100100.000ENSCATG00000026140SLU710099.147Cercocebus_atys
ENSG00000164609SLU710095.563ENSCLAG00000011915SLU710095.563Chinchilla_lanigera
ENSG00000164609SLU7100100.000ENSCSAG00000010383SLU79999.182Chlorocebus_sabaeus
ENSG00000164609SLU710085.495ENSCHOG00000005055SLU710085.495Choloepus_hoffmanni
ENSG00000164609SLU710085.520ENSCPBG00000008047SLU710086.371Chrysemys_picta_bellii
ENSG00000164609SLU78077.391ENSCING00000008595zf(cchc)-127667.770Ciona_intestinalis
ENSG00000164609SLU77053.052ENSCSAVG00000004927-10054.567Ciona_savignyi
ENSG00000164609SLU7100100.000ENSCANG00000003257SLU710099.317Colobus_angolensis_palliatus
ENSG00000164609SLU710078.226ENSCGRG00001022223-9968.376Cricetulus_griseus_chok1gshd
ENSG00000164609SLU710096.587ENSCGRG00001016416Slu710096.587Cricetulus_griseus_chok1gshd
ENSG00000164609SLU710096.246ENSCGRG00000005164Slu710096.246Cricetulus_griseus_crigri
ENSG00000164609SLU710079.839ENSCGRG00000008655-9968.718Cricetulus_griseus_crigri
ENSG00000164609SLU78785.484ENSCSEG00000015522slu79875.263Cynoglossus_semilaevis
ENSG00000164609SLU79585.294ENSCVAG00000019302slu79976.460Cyprinodon_variegatus
ENSG00000164609SLU79778.947ENSDARG00000038870slu79078.947Danio_rerio
ENSG00000164609SLU710095.105ENSDNOG00000048745SLU710094.369Dasypus_novemcinctus
ENSG00000164609SLU79378.938ENSDORG00000025365-9978.388Dipodomys_ordii
ENSG00000164609SLU710094.406ENSDORG00000006239-9982.594Dipodomys_ordii
ENSG00000164609SLU710076.238ENSDORG00000024886-10073.529Dipodomys_ordii
ENSG00000164609SLU79462.319FBgn0039626Slu77358.186Drosophila_melanogaster
ENSG00000164609SLU79093.951ENSETEG00000014798-10093.195Echinops_telfairi
ENSG00000164609SLU78385.714ENSETEG00000002993-10073.051Echinops_telfairi
ENSG00000164609SLU710071.774ENSEBUG00000003656slu79064.164Eptatretus_burgeri
ENSG00000164609SLU710097.445ENSEASG00005000613SLU710097.445Equus_asinus_asinus
ENSG00000164609SLU710097.270ENSECAG00000013696SLU710097.270Equus_caballus
ENSG00000164609SLU710094.059ENSEEUG00000006300-6196.414Erinaceus_europaeus
ENSG00000164609SLU79284.043ENSELUG00000022607slu79774.431Esox_lucius
ENSG00000164609SLU710098.123ENSFCAG00000011152SLU710098.123Felis_catus
ENSG00000164609SLU79986.231ENSFALG00000013473-10086.078Ficedula_albicollis
ENSG00000164609SLU710079.208ENSFALG00000014860-9984.080Ficedula_albicollis
ENSG00000164609SLU710095.804ENSFDAG00000003906SLU710094.881Fukomys_damarensis
ENSG00000164609SLU78791.129ENSFHEG00000012789slu79877.719Fundulus_heteroclitus
ENSG00000164609SLU78783.065ENSGMOG00000016207slu79868.607Gadus_morhua
ENSG00000164609SLU79987.780ENSGALG00000034414SLU78688.316Gallus_gallus
ENSG00000164609SLU79683.453ENSGAFG00000007953slu79777.153Gambusia_affinis
ENSG00000164609SLU79281.061ENSGACG00000018144slu79969.573Gasterosteus_aculeatus
ENSG00000164609SLU710085.690ENSGAGG00000008256SLU710086.542Gopherus_agassizii
ENSG00000164609SLU7100100.000ENSGGOG00000005591SLU710099.829Gorilla_gorilla
ENSG00000164609SLU78786.290ENSHBUG00000002296slu79283.105Haplochromis_burtoni
ENSG00000164609SLU710095.804ENSHGLG00000009442-10095.222Heterocephalus_glaber_female
ENSG00000164609SLU79788.776ENSHGLG00000008195-9282.158Heterocephalus_glaber_female
ENSG00000164609SLU79788.776ENSHGLG00100011540-9971.616Heterocephalus_glaber_male
ENSG00000164609SLU710095.804ENSHGLG00100008080-10095.222Heterocephalus_glaber_male
ENSG00000164609SLU79776.829ENSHCOG00000003110slu79877.178Hippocampus_comes
ENSG00000164609SLU78787.903ENSIPUG00000017949slu79877.058Ictalurus_punctatus
ENSG00000164609SLU78193.671ENSSTOG00000015057SLU79893.671Ictidomys_tridecemlineatus
ENSG00000164609SLU710096.503ENSJJAG00000011452Slu710094.710Jaculus_jaculus
ENSG00000164609SLU79782.270ENSKMAG00000005625slu710076.271Kryptolebias_marmoratus
ENSG00000164609SLU78787.903ENSLBEG00000004903slu79876.140Labrus_bergylta
ENSG00000164609SLU710081.122ENSLACG00000010170SLU710081.803Latimeria_chalumnae
ENSG00000164609SLU79780.776ENSLOCG00000009410slu79880.702Lepisosteus_oculatus
ENSG00000164609SLU710094.406ENSLAFG00000003725SLU710093.345Loxodonta_africana
ENSG00000164609SLU7100100.000ENSMFAG00000002001SLU710099.317Macaca_fascicularis
ENSG00000164609SLU7100100.000ENSMMUG00000023075SLU710097.099Macaca_mulatta
ENSG00000164609SLU7100100.000ENSMNEG00000029132SLU710099.488Macaca_nemestrina
ENSG00000164609SLU7100100.000ENSMLEG00000037647SLU710099.147Mandrillus_leucophaeus
ENSG00000164609SLU79084.733ENSMAMG00000008387slu79975.171Mastacembelus_armatus
ENSG00000164609SLU79778.383ENSMZEG00005012180slu79877.641Maylandia_zebra
ENSG00000164609SLU79987.435ENSMGAG00000002882SLU79987.973Meleagris_gallopavo
ENSG00000164609SLU710097.203ENSMAUG00000016739Slu710097.104Mesocricetus_auratus
ENSG00000164609SLU710097.440ENSMICG00000031781SLU710097.440Microcebus_murinus
ENSG00000164609SLU710096.503ENSMOCG00000012963Slu710096.416Microtus_ochrogaster
ENSG00000164609SLU710079.720ENSMMOG00000004203slu710075.597Mola_mola
ENSG00000164609SLU77081.690ENSMMOG00000005988-7581.690Mola_mola
ENSG00000164609SLU710090.630ENSMODG00000007968SLU79590.460Monodelphis_domestica
ENSG00000164609SLU79775.176ENSMALG00000004247slu79875.176Monopterus_albus
ENSG00000164609SLU710097.099MGP_CAROLIEiJ_G0016222Slu710097.586Mus_caroli
ENSG00000164609SLU710095.734ENSMUSG00000020409Slu79996.538Mus_musculus
ENSG00000164609SLU710096.587MGP_PahariEiJ_G0017358Slu710096.982Mus_pahari
ENSG00000164609SLU710096.928MGP_SPRETEiJ_G0017063Slu710097.384Mus_spretus
ENSG00000164609SLU710097.952ENSMPUG00000013264SLU79397.952Mustela_putorius_furo
ENSG00000164609SLU710096.587ENSMLUG00000003091SLU710096.587Myotis_lucifugus
ENSG00000164609SLU710097.270ENSNGAG00000015167Slu710097.270Nannospalax_galili
ENSG00000164609SLU7100100.000ENSNLEG00000004355SLU710099.488Nomascus_leucogenys
ENSG00000164609SLU710088.811ENSMEUG00000010577SLU79983.959Notamacropus_eugenii
ENSG00000164609SLU710095.105ENSOPRG00000004538SLU79988.245Ochotona_princeps
ENSG00000164609SLU710095.904ENSODEG00000010998-10095.904Octodon_degus
ENSG00000164609SLU710093.069ENSODEG00000005892-9794.064Octodon_degus
ENSG00000164609SLU79582.353ENSONIG00000012957slu79978.141Oreochromis_niloticus
ENSG00000164609SLU710086.713ENSOANG00000008090-9992.097Ornithorhynchus_anatinus
ENSG00000164609SLU76585.938ENSOANG00000012329-9985.938Ornithorhynchus_anatinus
ENSG00000164609SLU710098.020ENSOCUG00000011743SLU79994.710Oryctolagus_cuniculus
ENSG00000164609SLU79980.142ENSORLG00000005505slu79776.280Oryzias_latipes
ENSG00000164609SLU79780.576ENSORLG00020011665slu79976.158Oryzias_latipes_hni
ENSG00000164609SLU79979.433ENSORLG00015002040slu79976.370Oryzias_latipes_hsok
ENSG00000164609SLU79777.368ENSOMEG00000006235slu79777.544Oryzias_melastigma
ENSG00000164609SLU710097.902ENSOGAG00000012301SLU710097.782Otolemur_garnettii
ENSG00000164609SLU710096.928ENSOARG00000013468SLU710096.928Ovis_aries
ENSG00000164609SLU7100100.000ENSPPAG00000032717SLU710099.829Pan_paniscus
ENSG00000164609SLU710097.782ENSPPRG00000013856SLU710097.782Panthera_pardus
ENSG00000164609SLU710097.782ENSPTIG00000005434SLU710097.782Panthera_tigris_altaica
ENSG00000164609SLU7100100.000ENSPTRG00000017491SLU710099.659Pan_troglodytes
ENSG00000164609SLU7100100.000ENSPANG00000006850SLU710098.976Papio_anubis
ENSG00000164609SLU79776.801ENSPKIG00000009367slu79877.329Paramormyrops_kingsleyae
ENSG00000164609SLU710085.149ENSPSIG00000011216SLU710084.459Pelodiscus_sinensis
ENSG00000164609SLU78788.710ENSPMGG00000015695slu79673.545Periophthalmus_magnuspinnatus
ENSG00000164609SLU79782.014ENSPEMG00000000564-9978.007Peromyscus_maniculatus_bairdii
ENSG00000164609SLU710096.928ENSPEMG00000016646-10096.928Peromyscus_maniculatus_bairdii
ENSG00000164609SLU710089.510ENSPCIG00000018111SLU79989.483Phascolarctos_cinereus
ENSG00000164609SLU78789.516ENSPFOG00000009050slu79877.018Poecilia_formosa
ENSG00000164609SLU78789.516ENSPLAG00000005330slu79877.058Poecilia_latipinna
ENSG00000164609SLU78789.516ENSPMEG00000024369slu79877.465Poecilia_mexicana
ENSG00000164609SLU78789.516ENSPREG00000004355slu79876.585Poecilia_reticulata
ENSG00000164609SLU7100100.000ENSPPYG00000016008SLU710099.488Pongo_abelii
ENSG00000164609SLU77797.436ENSPCAG00000003323SLU78597.436Procavia_capensis
ENSG00000164609SLU710097.902ENSPCOG00000016138SLU710094.027Propithecus_coquereli
ENSG00000164609SLU710096.040ENSPVAG00000015935SLU78296.296Pteropus_vampyrus
ENSG00000164609SLU78584.426ENSPNYG00000004141-8879.602Pundamilia_nyererei
ENSG00000164609SLU79463.339ENSPNYG00000024087-9763.573Pundamilia_nyererei
ENSG00000164609SLU78786.290ENSPNYG00000000289slu79877.641Pundamilia_nyererei
ENSG00000164609SLU79778.131ENSPNAG00000006885slu79878.070Pygocentrus_nattereri
ENSG00000164609SLU710095.222ENSRNOG00000003822Slu710094.378Rattus_norvegicus
ENSG00000164609SLU7100100.000ENSRBIG00000021391SLU710095.918Rhinopithecus_bieti
ENSG00000164609SLU7100100.000ENSRROG00000008930SLU710099.317Rhinopithecus_roxellana
ENSG00000164609SLU710098.805ENSSBOG00000003225SLU710098.805Saimiri_boliviensis_boliviensis
ENSG00000164609SLU710090.630ENSSHAG00000009841-10090.460Sarcophilus_harrisii
ENSG00000164609SLU79982.253ENSSHAG00000007807-10081.538Sarcophilus_harrisii
ENSG00000164609SLU79780.141ENSSFOG00015015923slu79780.316Scleropages_formosus
ENSG00000164609SLU79580.435ENSSMAG00000004281slu79973.935Scophthalmus_maximus
ENSG00000164609SLU79776.708ENSSDUG00000005127slu79876.708Seriola_dumerili
ENSG00000164609SLU78787.097ENSSLDG00000014353slu79877.058Seriola_lalandi_dorsalis
ENSG00000164609SLU79391.729ENSSARG00000014137-10086.111Sorex_araneus
ENSG00000164609SLU79390.977ENSSARG00000014139-10085.243Sorex_araneus
ENSG00000164609SLU79390.977ENSSARG00000006390-10087.770Sorex_araneus
ENSG00000164609SLU79391.729ENSSARG00000001869-10084.028Sorex_araneus
ENSG00000164609SLU710080.375ENSSARG00000012209-10080.375Sorex_araneus
ENSG00000164609SLU79389.474ENSSARG00000014506-10084.916Sorex_araneus
ENSG00000164609SLU79391.729ENSSARG00000006902-10084.896Sorex_araneus
ENSG00000164609SLU78990.551ENSSARG00000014128-10087.288Sorex_araneus
ENSG00000164609SLU76181.461ENSSARG00000006540-10080.672Sorex_araneus
ENSG00000164609SLU710084.915ENSSPUG00000000666SLU710085.932Sphenodon_punctatus
ENSG00000164609SLU79776.842ENSSPAG00000014100slu79975.510Stegastes_partitus
ENSG00000164609SLU710096.758ENSSSCG00000017033SLU710096.758Sus_scrofa
ENSG00000164609SLU79986.403ENSTGUG00000001410SLU79986.248Taeniopygia_guttata
ENSG00000164609SLU78787.097ENSTRUG00000001335slu79873.739Takifugu_rubripes
ENSG00000164609SLU78788.710ENSTNIG00000009677slu710076.049Tetraodon_nigroviridis
ENSG00000164609SLU710082.082ENSTBEG00000015604SLU79981.741Tupaia_belangeri
ENSG00000164609SLU79095.652ENSTTRG00000011575SLU710094.896Tursiops_truncatus
ENSG00000164609SLU710097.782ENSUMAG00000000110SLU79297.782Ursus_maritimus
ENSG00000164609SLU710095.050ENSVPAG00000009595SLU710094.198Vicugna_pacos
ENSG00000164609SLU710098.464ENSVVUG00000003989SLU79398.464Vulpes_vulpes
ENSG00000164609SLU79879.376ENSXETG00000016536slu710081.781Xenopus_tropicalis
ENSG00000164609SLU78790.323ENSXCOG00000004207slu79876.720Xiphophorus_couchianus
ENSG00000164609SLU78790.323ENSXMAG00000009007slu79877.193Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000375RNA splicing, via transesterification reactions10197984.IDAProcess
GO:0000380alternative mRNA splicing, via spliceosome15728250.IDAProcess
GO:0000386second spliceosomal transesterification activity21873635.IBAFunction
GO:0000386second spliceosomal transesterification activity10197984.IDAFunction
GO:0000389mRNA 3'-splice site recognition15728250.IDAProcess
GO:0000398mRNA splicing, via spliceosome11991638.ICProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0005515protein binding16189514.22365833.23455924.25416956.IPIFunction
GO:0005634nucleus21122810.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005681spliceosomal complex21873635.IBAComponent
GO:0005681spliceosomal complex10197984.IDAComponent
GO:0005737cytoplasm21122810.IDAComponent
GO:0005829cytosol-IDAComponent
GO:0006405RNA export from nucleus-TASProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0006886intracellular protein transport21122810.IDAProcess
GO:0008270zinc ion binding15181151.IDAFunction
GO:0016020membrane19946888.HDAComponent
GO:0016607nuclear speck15728250.IDAComponent
GO:0030532small nuclear ribonucleoprotein complex15181151.IDAComponent
GO:0030628pre-mRNA 3'-splice site binding15728250.IDAFunction
GO:0031124mRNA 3'-end processing-TASProcess
GO:0034605cellular response to heat21122810.IDAProcess
GO:0043231intracellular membrane-bounded organelle-IDAComponent
GO:0071013catalytic step 2 spliceosome11991638.IDAComponent

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