EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000165934 (Gene tree)
Gene ID
53981
Gene Symbol
CPSF2
Alias
KIAA1367|CPSF100
Full Name
cleavage and polyadenylation specific factor 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
50,209 bases
Position
chr14:92,121,937-92,172,145
Accession
2325
RBP type
canonical RBP
Summary
(Cleavage And Polyadenylation Specific Factor 2) is a Protein Coding gene. Diseases associated with CPSF2 include Noonan Syndrome 1. Among its related pathways are Transport of Mature Transcript to Cytoplasm and RNA Polymerase II Transcription Termination. Gene Ontology (GO) annotations related to this gene include RNA binding. An important paralog of this gene is INTS11.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000298875Beta-CaspPF10996.83.4e-2011
ENSP00000451418Lactamase_BPF00753.276.7e-0711
ENSP00000298875Lactamase_BPF00753.275.7e-0611
ENSP00000298875RMMBLPF07521.124.3e-1511
ENSP00000451390RMMBLPF07521.121.4e-1411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000298875CPSF2-20113035-ENSP00000298875782 (aa)-Q9P2I0
ENST00000556622CPSF2-205469--- (aa)--
ENST00000554290CPSF2-203558-ENSP0000045250362 (aa)-G3V5T3
ENST00000553427CPSF2-202715-ENSP0000045141880 (aa)-G3V3T7
ENST00000555244CPSF2-204806-ENSP00000451390269 (aa)-H0YJF4
Gene Model
Click here to download ENSG00000165934's gene model file
Pathways
Pathway IDPathway NameSource
hsa03015mRNA surveillance pathwayKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000165934Cholesterol, LDL5.18782412897156E-517903299
ENSG00000165934Cholesterol, LDL7.27829925104562E-517903299
ENSG00000165934Hip5.64613429516314E-617903296
ENSG00000165934Hip8.50741660674004E-617903296
ENSG00000165934Hip3.42791945327309E-517903296
ENSG00000165934Hip8.74531513195276E-517903296
ENSG00000165934Body Mass Index2.5004315E-005-
ENSG00000165934Cholesterol, LDL6.8230000E-005-
ENSG00000165934Hair Color5E-1320585627
ENSG00000165934Eye Color1E-1620585627
ENSG00000165934Eye Color2E-2320585627
ENSG00000165934Hair Color8E-2118483556
ENSG00000165934Hair Color1E-4817952075
ENSG00000165934Eye Color4E-3817952075
ENSG00000165934Myopia4E-1427182965
ENSG00000165934Hormones3E-623251661
ENSG00000165934Eye Color3E-723548203
ENSG00000165934Eye Color4E-1123548203
ENSG00000165934Hair Color2E-3623548203
ENSG00000165934Corneal Pachymetry8E-2121835309
ENSG00000165934Renal Insufficiency, Chronic2E-621546767
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000165934rs10091701492170369?Dialysis-related mortality21546767[1.49-2.63]2EFO_0003884
ENSG00000165934rs340163081492149398?Myopia27182965[1.06-1.1]1.0764263HP_0000545
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000165934's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000165934CPSF210087.500ENSAPOG00000001242cpsf210085.805Acanthochromis_polyacanthus
ENSG00000165934CPSF2100100.000ENSAMEG00000014835-10099.738Ailuropoda_melanoleuca
ENSG00000165934CPSF29783.280ENSAMEG00000013790-10099.707Ailuropoda_melanoleuca
ENSG00000165934CPSF210088.750ENSACIG00000009331cpsf210086.203Amphilophus_citrinellus
ENSG00000165934CPSF210087.500ENSAOCG00000014095cpsf210085.932Amphiprion_ocellaris
ENSG00000165934CPSF210087.500ENSAPEG00000009158cpsf210085.932Amphiprion_percula
ENSG00000165934CPSF210087.500ENSATEG00000017644cpsf210084.307Anabas_testudineus
ENSG00000165934CPSF210096.250ENSAPLG00000006330CPSF210096.051Anas_platyrhynchos
ENSG00000165934CPSF210096.250ENSACAG00000009245CPSF210095.275Anolis_carolinensis
ENSG00000165934CPSF2100100.000ENSANAG00000022915CPSF210099.744Aotus_nancymaae
ENSG00000165934CPSF210088.750ENSAMXG00000018696cpsf210085.642Astyanax_mexicanus
ENSG00000165934CPSF2100100.000ENSBTAG00000010227CPSF210099.616Bos_taurus
ENSG00000165934CPSF210060.000WBGene00017313cpsf-210041.032Caenorhabditis_elegans
ENSG00000165934CPSF2100100.000ENSCJAG00000018069CPSF210099.744Callithrix_jacchus
ENSG00000165934CPSF2100100.000ENSCAFG00000010909CPSF210099.616Canis_familiaris
ENSG00000165934CPSF2100100.000ENSCAFG00020020670CPSF210099.616Canis_lupus_dingo
ENSG00000165934CPSF2100100.000ENSCHIG00000023848CPSF210099.616Capra_hircus
ENSG00000165934CPSF2100100.000ENSTSYG00000009036CPSF210098.593Carlito_syrichta
ENSG00000165934CPSF28399.550ENSCAPG00000004833-10099.707Cavia_aperea
ENSG00000165934CPSF2100100.000ENSCPOG00000010899CPSF210099.744Cavia_porcellus
ENSG00000165934CPSF2100100.000ENSCCAG00000028088CPSF210099.744Cebus_capucinus
ENSG00000165934CPSF2100100.000ENSCATG00000030132CPSF210099.872Cercocebus_atys
ENSG00000165934CPSF2100100.000ENSCLAG00000012404CPSF210099.616Chinchilla_lanigera
ENSG00000165934CPSF2100100.000ENSCSAG00000011300CPSF210099.872Chlorocebus_sabaeus
ENSG00000165934CPSF2100100.000ENSCHOG00000012904CPSF210092.583Choloepus_hoffmanni
ENSG00000165934CPSF210096.296ENSCPBG00000008766CPSF29796.296Chrysemys_picta_bellii
ENSG00000165934CPSF210062.500ENSCING00000007881-10054.500Ciona_intestinalis
ENSG00000165934CPSF29499.863ENSCANG00000041651CPSF210099.863Colobus_angolensis_palliatus
ENSG00000165934CPSF210098.750ENSCGRG00001006901Cpsf210098.465Cricetulus_griseus_chok1gshd
ENSG00000165934CPSF210098.750ENSCGRG00000012416Cpsf210098.465Cricetulus_griseus_crigri
ENSG00000165934CPSF210087.500ENSCSEG00000004116cpsf210083.777Cynoglossus_semilaevis
ENSG00000165934CPSF210087.500ENSCVAG00000000095cpsf210085.298Cyprinodon_variegatus
ENSG00000165934CPSF210090.000ENSDARG00000028971cpsf210085.696Danio_rerio
ENSG00000165934CPSF2100100.000ENSDNOG00000042757CPSF210099.488Dasypus_novemcinctus
ENSG00000165934CPSF210099.361ENSDORG00000013709Cpsf210099.361Dipodomys_ordii
ENSG00000165934CPSF210066.250FBgn0027873Cpsf10010053.683Drosophila_melanogaster
ENSG00000165934CPSF210098.750ENSETEG00000012123CPSF210090.294Echinops_telfairi
ENSG00000165934CPSF25276.471ENSEBUG00000012098cpsf29376.471Eptatretus_burgeri
ENSG00000165934CPSF2100100.000ENSEASG00005021193CPSF210097.611Equus_asinus_asinus
ENSG00000165934CPSF2100100.000ENSECAG00000023935CPSF210099.488Equus_caballus
ENSG00000165934CPSF210088.750ENSELUG00000008442cpsf210083.940Esox_lucius
ENSG00000165934CPSF210099.488ENSFCAG00000007886CPSF210099.488Felis_catus
ENSG00000165934CPSF210096.296ENSFALG00000002412CPSF210096.296Ficedula_albicollis
ENSG00000165934CPSF2100100.000ENSFDAG00000006327CPSF210099.616Fukomys_damarensis
ENSG00000165934CPSF210087.500ENSFHEG00000015465cpsf29885.098Fundulus_heteroclitus
ENSG00000165934CPSF210088.750ENSGMOG00000008761cpsf210083.586Gadus_morhua
ENSG00000165934CPSF210095.530ENSGALG00000010783CPSF210096.041Gallus_gallus
ENSG00000165934CPSF210087.500ENSGAFG00000001407cpsf210085.425Gambusia_affinis
ENSG00000165934CPSF210087.500ENSGACG00000008418cpsf210084.537Gasterosteus_aculeatus
ENSG00000165934CPSF210096.424ENSGAGG00000008287CPSF210096.424Gopherus_agassizii
ENSG00000165934CPSF2100100.000ENSGGOG00000011799CPSF2100100.000Gorilla_gorilla
ENSG00000165934CPSF210085.171ENSHBUG00000023466cpsf210085.171Haplochromis_burtoni
ENSG00000165934CPSF2100100.000ENSHGLG00000018311CPSF210099.488Heterocephalus_glaber_female
ENSG00000165934CPSF2100100.000ENSHGLG00100016460CPSF210099.488Heterocephalus_glaber_male
ENSG00000165934CPSF210090.000ENSHCOG00000019527cpsf29884.537Hippocampus_comes
ENSG00000165934CPSF210088.750ENSIPUG00000020857cpsf210085.642Ictalurus_punctatus
ENSG00000165934CPSF2100100.000ENSSTOG00000009528CPSF210099.616Ictidomys_tridecemlineatus
ENSG00000165934CPSF2100100.000ENSJJAG00000017925Cpsf210099.233Jaculus_jaculus
ENSG00000165934CPSF210090.000ENSKMAG00000019429cpsf210084.664Kryptolebias_marmoratus
ENSG00000165934CPSF29584.358ENSLBEG00000011585cpsf210084.492Labrus_bergylta
ENSG00000165934CPSF210089.655ENSLACG00000019024CPSF210089.911Latimeria_chalumnae
ENSG00000165934CPSF210088.889ENSLOCG00000014102cpsf210087.706Lepisosteus_oculatus
ENSG00000165934CPSF2100100.000ENSLAFG00000004891CPSF210099.490Loxodonta_africana
ENSG00000165934CPSF2100100.000ENSMFAG00000041212CPSF210099.872Macaca_fascicularis
ENSG00000165934CPSF2100100.000ENSMMUG00000000699CPSF210099.872Macaca_mulatta
ENSG00000165934CPSF2100100.000ENSMNEG00000031584CPSF210099.872Macaca_nemestrina
ENSG00000165934CPSF2100100.000ENSMLEG00000029394CPSF210099.872Mandrillus_leucophaeus
ENSG00000165934CPSF210087.500ENSMAMG00000004235cpsf210085.805Mastacembelus_armatus
ENSG00000165934CPSF210085.298ENSMZEG00005001769cpsf210085.298Maylandia_zebra
ENSG00000165934CPSF210096.046ENSMGAG00000013122CPSF210096.046Meleagris_gallopavo
ENSG00000165934CPSF210098.750ENSMAUG00000015160Cpsf210098.465Mesocricetus_auratus
ENSG00000165934CPSF2100100.000ENSMICG00000016441CPSF210099.744Microcebus_murinus
ENSG00000165934CPSF210098.750ENSMOCG00000015372Cpsf210098.465Microtus_ochrogaster
ENSG00000165934CPSF210086.250ENSMMOG00000015590cpsf210080.989Mola_mola
ENSG00000165934CPSF210098.849ENSMODG00000002042CPSF210098.849Monodelphis_domestica
ENSG00000165934CPSF210086.250ENSMALG00000022275cpsf210082.636Monopterus_albus
ENSG00000165934CPSF210097.954ENSMUSG00000041781Cpsf210097.954Mus_musculus
ENSG00000165934CPSF210098.210MGP_PahariEiJ_G0029791Cpsf210098.210Mus_pahari
ENSG00000165934CPSF210097.954MGP_SPRETEiJ_G0018877Cpsf210097.954Mus_spretus
ENSG00000165934CPSF2100100.000ENSMPUG00000007617CPSF29899.616Mustela_putorius_furo
ENSG00000165934CPSF2100100.000ENSMLUG00000005570CPSF210098.849Myotis_lucifugus
ENSG00000165934CPSF210098.977ENSNGAG00000020312Cpsf210098.977Nannospalax_galili
ENSG00000165934CPSF210085.678ENSNBRG00000022402cpsf210085.678Neolamprologus_brichardi
ENSG00000165934CPSF2100100.000ENSNLEG00000017132CPSF210099.105Nomascus_leucogenys
ENSG00000165934CPSF29998.734ENSMEUG00000008138CPSF29199.676Notamacropus_eugenii
ENSG00000165934CPSF29491.667ENSOPRG00000008484-10091.667Ochotona_princeps
ENSG00000165934CPSF210099.361ENSODEG00000008682CPSF210099.361Octodon_degus
ENSG00000165934CPSF210086.250ENSONIG00000005901cpsf210086.058Oreochromis_niloticus
ENSG00000165934CPSF210098.465ENSOANG00000003822CPSF210098.465Ornithorhynchus_anatinus
ENSG00000165934CPSF2100100.000ENSOCUG00000005713CPSF210099.233Oryctolagus_cuniculus
ENSG00000165934CPSF210080.101ENSORLG00000011628cpsf210080.101Oryzias_latipes
ENSG00000165934CPSF210087.500ENSORLG00020016980cpsf210084.918Oryzias_latipes_hni
ENSG00000165934CPSF210087.500ENSORLG00015011910cpsf210084.918Oryzias_latipes_hsok
ENSG00000165934CPSF210087.500ENSOMEG00000022876cpsf210084.284Oryzias_melastigma
ENSG00000165934CPSF2100100.000ENSOGAG00000032385-9898.276Otolemur_garnettii
ENSG00000165934CPSF29777.564ENSOGAG00000008605-10094.152Otolemur_garnettii
ENSG00000165934CPSF2100100.000ENSOARG00000012889CPSF210096.556Ovis_aries
ENSG00000165934CPSF2100100.000ENSPPAG00000039666CPSF2100100.000Pan_paniscus
ENSG00000165934CPSF29999.488ENSPPRG00000010869CPSF210099.488Panthera_pardus
ENSG00000165934CPSF210099.488ENSPTIG00000021202CPSF210099.488Panthera_tigris_altaica
ENSG00000165934CPSF2100100.000ENSPTRG00000006651CPSF2100100.000Pan_troglodytes
ENSG00000165934CPSF2100100.000ENSPANG00000017417CPSF210099.872Papio_anubis
ENSG00000165934CPSF210081.957ENSPKIG00000021453cpsf210081.957Paramormyrops_kingsleyae
ENSG00000165934CPSF210095.785ENSPSIG00000006289CPSF210095.785Pelodiscus_sinensis
ENSG00000165934CPSF29863.777ENSPMGG00000002511cpsf210079.734Periophthalmus_magnuspinnatus
ENSG00000165934CPSF210098.750ENSPEMG00000007917Cpsf210098.721Peromyscus_maniculatus_bairdii
ENSG00000165934CPSF210080.000ENSPMAG00000006205cpsf210074.336Petromyzon_marinus
ENSG00000165934CPSF210098.849ENSPCIG00000011393CPSF210098.849Phascolarctos_cinereus
ENSG00000165934CPSF210087.500ENSPFOG00000018648cpsf210085.298Poecilia_formosa
ENSG00000165934CPSF210087.500ENSPLAG00000019199cpsf29985.298Poecilia_latipinna
ENSG00000165934CPSF210087.500ENSPMEG00000012100cpsf210085.027Poecilia_mexicana
ENSG00000165934CPSF210087.500ENSPREG00000008960cpsf210085.171Poecilia_reticulata
ENSG00000165934CPSF29984.013ENSPPYG00000029685-100100.000Pongo_abelii
ENSG00000165934CPSF2100100.000ENSPCAG00000012477CPSF210099.488Procavia_capensis
ENSG00000165934CPSF2100100.000ENSPCOG00000026387CPSF210099.744Propithecus_coquereli
ENSG00000165934CPSF299100.000ENSPVAG00000004223CPSF265100.000Pteropus_vampyrus
ENSG00000165934CPSF210085.316ENSPNYG00000023356cpsf210085.316Pundamilia_nyererei
ENSG00000165934CPSF210088.750ENSPNAG00000001849cpsf210086.785Pygocentrus_nattereri
ENSG00000165934CPSF210098.338ENSRNOG00000005733Cpsf210098.338Rattus_norvegicus
ENSG00000165934CPSF2100100.000ENSRBIG00000044792CPSF210099.872Rhinopithecus_bieti
ENSG00000165934CPSF2100100.000ENSRROG00000034875CPSF210099.872Rhinopithecus_roxellana
ENSG00000165934CPSF2100100.000ENSSBOG00000024571CPSF210099.744Saimiri_boliviensis_boliviensis
ENSG00000165934CPSF210098.977ENSSHAG00000010458CPSF210098.977Sarcophilus_harrisii
ENSG00000165934CPSF210088.750ENSSFOG00015002117cpsf210087.675Scleropages_formosus
ENSG00000165934CPSF210087.500ENSSMAG00000002001cpsf210084.030Scophthalmus_maximus
ENSG00000165934CPSF210087.500ENSSDUG00000004084cpsf210086.185Seriola_dumerili
ENSG00000165934CPSF210087.500ENSSLDG00000024330cpsf210085.678Seriola_lalandi_dorsalis
ENSG00000165934CPSF210097.500ENSSARG00000009784-63100.000Sorex_araneus
ENSG00000165934CPSF210096.250ENSSPUG00000013485CPSF210095.785Sphenodon_punctatus
ENSG00000165934CPSF210087.500ENSSPAG00000013284cpsf210085.171Stegastes_partitus
ENSG00000165934CPSF2100100.000ENSSSCG00000002447CPSF210099.488Sus_scrofa
ENSG00000165934CPSF28393.722ENSTGUG00000016355-10094.059Taeniopygia_guttata
ENSG00000165934CPSF210096.424ENSTGUG00000012571-10096.424Taeniopygia_guttata
ENSG00000165934CPSF210096.250ENSTGUG00000012569-10097.802Taeniopygia_guttata
ENSG00000165934CPSF210087.500ENSTRUG00000003742cpsf210084.918Takifugu_rubripes
ENSG00000165934CPSF210087.500ENSTNIG00000012229-10080.097Tetraodon_nigroviridis
ENSG00000165934CPSF210087.500ENSTNIG00000012228cpsf210084.450Tetraodon_nigroviridis
ENSG00000165934CPSF29998.734ENSTBEG00000004530CPSF294100.000Tupaia_belangeri
ENSG00000165934CPSF288100.000ENSTTRG00000008697CPSF288100.000Tursiops_truncatus
ENSG00000165934CPSF2100100.000ENSUAMG00000028071CPSF210099.744Ursus_americanus
ENSG00000165934CPSF2100100.000ENSUMAG00000005029CPSF210099.744Ursus_maritimus
ENSG00000165934CPSF2100100.000ENSVPAG00000003503CPSF210099.616Vicugna_pacos
ENSG00000165934CPSF2100100.000ENSVVUG00000024642CPSF210099.616Vulpes_vulpes
ENSG00000165934CPSF210092.082ENSXETG00000010289cpsf210092.082Xenopus_tropicalis
ENSG00000165934CPSF210087.500ENSXCOG00000001764cpsf210085.678Xiphophorus_couchianus
ENSG00000165934CPSF210087.500ENSXMAG00000017048cpsf210085.805Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding-IEAFunction
GO:0005515protein binding18288197.18688255.26496610.IPIFunction
GO:0005654nucleoplasm-TASComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex18305108.21102410.IDAComponent
GO:0006369termination of RNA polymerase II transcription-TASProcess
GO:0006378mRNA polyadenylation-IEAProcess
GO:0006379mRNA cleavage-IEAProcess
GO:0006398mRNA 3'-end processing by stem-loop binding and cleavage18688255.IDAProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0016020membrane19946888.HDAComponent
GO:0031124mRNA 3'-end processing-TASProcess

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