EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

GWAS

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000166503 (Gene tree)
Gene ID: 50810
Gene Symbol: HDGFL3
Alias: HRP-3|Hdgfrp3
Full Name: HDGF like 3
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 95,281 bases
Position: chr15:83,112,738-83,208,018
Accession: 24937
RBP type: non-canonical RBP
Summary: (HDGF Like 3) is a Protein Coding gene. An important paralog of this gene is HDGFL2.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000299633	HDGFL3-201	12733	XM_006720554	ENSP00000299633	203 (aa)	XP_006720617	Q9Y3E1
ENST00000568129	HDGFL3-205	426	-	-	- (aa)	-	-
ENST00000568294	HDGFL3-206	3397	-	ENSP00000455388	141 (aa)	-	H3BPM9
ENST00000563404	HDGFL3-203	448	-	ENSP00000456699	44 (aa)	-	H3BPQ6
ENST00000562702	HDGFL3-202	449	-	-	- (aa)	-	-
ENST00000563790	HDGFL3-204	934	-	ENSP00000455425	44 (aa)	-	H3BPQ6

Gene Model

Click here to download ENSG00000166503's gene model file

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000166503	rs2034618	15	83130880	C	Diastolic blood pressure	27841878	unit increase	0.188	EFO_0006336
ENSG00000166503	rs2034618	15	83130880	C	Diastolic blood pressure	27841878	unit increase	0.192	EFO_0006336

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000166503's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000166503	HDGFL3	55	83.333	ENSG00000167674	HDGFL2	96	77.419	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005576	extracellular region	27068509.	HDA	Component
GO:0005634	nucleus	10581169.	IDA	Component
GO:0005654	nucleoplasm	-	IDA	Component
GO:0005829	cytosol	-	ISS	Component
GO:0007026	negative regulation of microtubule depolymerization	-	ISS	Process
GO:0008017	microtubule binding	-	ISS	Function
GO:0008083	growth factor activity	-	IEA	Function
GO:0008283	cell proliferation	10581169.	NAS	Process
GO:0010469	regulation of signaling receptor activity	-	IEA	Process
GO:0015631	tubulin binding	-	ISS	Function
GO:0031175	neuron projection development	-	ISS	Process
GO:0046785	microtubule polymerization	-	ISS	Process