EuRBPDB

Description

Ensembl ID: ENSG00000168564 (Gene tree)
Gene ID: 55602
Gene Symbol: CDKN2AIP
Alias: FLJ20036|CARF
Full Name: CDKN2A interacting protein
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 4,474 bases
Position: chr4:183,444,591-183,449,064
Accession: 24325
RBP type: non-canonical RBP
Summary: The protein encoded by this gene regulates the DNA damage response through several different signaling pathways. One such pathway is the p53-HDM2-p21(WAF1) pathway, which is critical to the DNA damage response. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2015]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
30374086	SAMMSON fosters cancer cell fitness by concertedly enhancing mitochondrial and cytosolic translation.	Nat Struct Mol Biol	2018 Nov	Vendramin R	doi: 10.1038/s41594-018-0143-4

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000504169	CDKN2AIP-203	2721	-	ENSP00000427108	580 (aa)	-	Q9NXV6
ENST00000302350	CDKN2AIP-201	2646	-	ENSP00000303788	126 (aa)	-	J3KNE1
ENST00000506835	CDKN2AIP-204	888	-	-	- (aa)	-	-
ENST00000510928	CDKN2AIP-205	860	-	ENSP00000421308	135 (aa)	-	D6RGD2
ENST00000502924	CDKN2AIP-202	347	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001652	granular component	12154087.	IDA	Component
GO:0002039	p53 binding	15109303.	IDA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	12581788.24825908.	IPI	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	12154087.	IDA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	12154087.	IDA	Component
GO:0006974	cellular response to DNA damage stimulus	24825908.	IDA	Process
GO:0009967	positive regulation of signal transduction	15109303.	IMP	Process
GO:0030307	positive regulation of cell growth	24825908.	IMP	Process
GO:0030308	negative regulation of cell growth	12154087.15109303.	IMP	Process
GO:0031647	regulation of protein stability	12154087.	IMP	Process