EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000168566 (Gene tree)
Gene ID: 154007
Gene Symbol: SNRNP48
Alias: FLJ32234|dJ512B11.2|dJ336K20B.1|C6orf151
Full Name: small nuclear ribonucleoprotein U11/U12 subunit 48
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 21,769 bases
Position: chr6:7,590,199-7,611,967
Accession: 21368
RBP type: canonical RBP
Summary: (Small Nuclear Ribonucleoprotein U11/U12 Subunit 48) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Minor Pathway and mRNA Splicing - Major Pathway. An important paralog of this gene is GTSF1.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000339834	zf-U11-48K	PF05253.12	3e-09	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000496946	SNRNP48-202	2610	-	-	- (aa)	-	-
ENST00000634363	SNRNP48-203	781	-	ENSP00000489245	149 (aa)	-	A0A0U1RQZ2
ENST00000342415	SNRNP48-201	4173	XM_011514312	ENSP00000339834	339 (aa)	XP_011512614	Q6IEG0

Gene Model

Click here to download ENSG00000168566's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000168566's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000168566	SNRNP48	81	47.350	ENSAPOG00000021430	snrnp48	83	47.079	Acanthochromis_polyacanthus
ENSG00000168566	SNRNP48	99	89.914	ENSAMEG00000017349	SNRNP48	100	88.761	Ailuropoda_melanoleuca
ENSG00000168566	SNRNP48	83	45.936	ENSACIG00000002032	snrnp48	82	45.936	Amphilophus_citrinellus
ENSG00000168566	SNRNP48	81	47.350	ENSAOCG00000010562	snrnp48	96	42.407	Amphiprion_ocellaris
ENSG00000168566	SNRNP48	81	47.687	ENSAPEG00000003231	snrnp48	96	42.609	Amphiprion_percula
ENSG00000168566	SNRNP48	77	50.000	ENSATEG00000020210	snrnp48	81	49.643	Anabas_testudineus
ENSG00000168566	SNRNP48	83	65.068	ENSACAG00000002811	SNRNP48	89	64.828	Anolis_carolinensis
ENSG00000168566	SNRNP48	100	98.230	ENSANAG00000033538	SNRNP48	100	98.230	Aotus_nancymaae
ENSG00000168566	SNRNP48	94	45.846	ENSAMXG00000015309	snrnp48	85	48.264	Astyanax_mexicanus
ENSG00000168566	SNRNP48	100	86.176	ENSBTAG00000001123	SNRNP48	100	86.471	Bos_taurus
ENSG00000168566	SNRNP48	100	97.640	ENSCJAG00000021330	SNRNP48	100	97.640	Callithrix_jacchus
ENSG00000168566	SNRNP48	99	91.667	ENSCAFG00000009574	SNRNP48	83	91.691	Canis_familiaris
ENSG00000168566	SNRNP48	99	91.988	ENSCAFG00020013203	SNRNP48	99	91.988	Canis_lupus_dingo
ENSG00000168566	SNRNP48	100	87.647	ENSCHIG00000015216	SNRNP48	100	87.941	Capra_hircus
ENSG00000168566	SNRNP48	100	93.215	ENSTSYG00000000698	SNRNP48	100	93.215	Carlito_syrichta
ENSG00000168566	SNRNP48	91	88.312	ENSCAPG00000006768	SNRNP48	100	87.987	Cavia_aperea
ENSG00000168566	SNRNP48	100	90.855	ENSCPOG00000007910	SNRNP48	100	90.855	Cavia_porcellus
ENSG00000168566	SNRNP48	100	96.755	ENSCCAG00000035652	SNRNP48	100	96.755	Cebus_capucinus
ENSG00000168566	SNRNP48	100	98.230	ENSCATG00000033947	SNRNP48	100	98.230	Cercocebus_atys
ENSG00000168566	SNRNP48	100	90.560	ENSCLAG00000003765	SNRNP48	100	90.560	Chinchilla_lanigera
ENSG00000168566	SNRNP48	100	98.820	ENSCSAG00000007409	SNRNP48	100	98.820	Chlorocebus_sabaeus
ENSG00000168566	SNRNP48	85	63.487	ENSCPBG00000019146	SNRNP48	90	64.310	Chrysemys_picta_bellii
ENSG00000168566	SNRNP48	94	30.341	ENSCING00000004121	-	70	33.197	Ciona_intestinalis
ENSG00000168566	SNRNP48	100	98.820	ENSCANG00000030017	SNRNP48	100	98.820	Colobus_angolensis_palliatus
ENSG00000168566	SNRNP48	100	88.496	ENSCGRG00001001076	-	100	87.611	Cricetulus_griseus_chok1gshd
ENSG00000168566	SNRNP48	99	70.149	ENSCGRG00001008805	-	95	69.552	Cricetulus_griseus_chok1gshd
ENSG00000168566	SNRNP48	100	88.496	ENSCGRG00000007781	Snrnp48	100	87.611	Cricetulus_griseus_crigri
ENSG00000168566	SNRNP48	77	49.049	ENSCSEG00000000722	snrnp48	72	49.425	Cynoglossus_semilaevis
ENSG00000168566	SNRNP48	89	46.006	ENSCVAG00000019829	snrnp48	73	46.875	Cyprinodon_variegatus
ENSG00000168566	SNRNP48	81	46.503	ENSDARG00000039989	snrnp48	83	45.205	Danio_rerio
ENSG00000168566	SNRNP48	100	90.882	ENSDNOG00000014978	SNRNP48	100	90.882	Dasypus_novemcinctus
ENSG00000168566	SNRNP48	99	88.791	ENSDORG00000015140	Snrnp48	100	88.000	Dipodomys_ordii
ENSG00000168566	SNRNP48	99	92.604	ENSEASG00005012021	SNRNP48	100	92.330	Equus_asinus_asinus
ENSG00000168566	SNRNP48	100	93.215	ENSECAG00000026937	SNRNP48	100	93.215	Equus_caballus
ENSG00000168566	SNRNP48	100	70.588	ENSEEUG00000015437	SNRNP48	99	70.294	Erinaceus_europaeus
ENSG00000168566	SNRNP48	87	46.689	ENSELUG00000009766	snrnp48	77	47.857	Esox_lucius
ENSG00000168566	SNRNP48	100	93.510	ENSFCAG00000018853	SNRNP48	100	93.510	Felis_catus
ENSG00000168566	SNRNP48	83	66.438	ENSFALG00000007797	SNRNP48	92	65.979	Ficedula_albicollis
ENSG00000168566	SNRNP48	99	90.533	ENSFDAG00000009231	SNRNP48	100	90.265	Fukomys_damarensis
ENSG00000168566	SNRNP48	59	56.931	ENSFHEG00000014647	snrnp48	97	46.465	Fundulus_heteroclitus
ENSG00000168566	SNRNP48	73	47.177	ENSGMOG00000018599	-	86	45.230	Gadus_morhua
ENSG00000168566	SNRNP48	78	67.148	ENSGALG00000013005	SNRNP48	82	68.571	Gallus_gallus
ENSG00000168566	SNRNP48	82	48.239	ENSGAFG00000021639	snrnp48	81	43.807	Gambusia_affinis
ENSG00000168566	SNRNP48	71	51.240	ENSGACG00000017756	-	84	48.084	Gasterosteus_aculeatus
ENSG00000168566	SNRNP48	84	62.583	ENSGAGG00000000865	SNRNP48	96	63.300	Gopherus_agassizii
ENSG00000168566	SNRNP48	100	99.410	ENSGGOG00000013220	SNRNP48	100	99.410	Gorilla_gorilla
ENSG00000168566	SNRNP48	85	39.062	ENSHBUG00000017066	snrnp48	83	45.578	Haplochromis_burtoni
ENSG00000168566	SNRNP48	99	91.716	ENSHGLG00000015241	SNRNP48	100	91.445	Heterocephalus_glaber_female
ENSG00000168566	SNRNP48	99	91.716	ENSHGLG00100010027	SNRNP48	100	91.445	Heterocephalus_glaber_male
ENSG00000168566	SNRNP48	72	47.154	ENSHCOG00000014066	snrnp48	81	45.139	Hippocampus_comes
ENSG00000168566	SNRNP48	100	94.395	ENSSTOG00000014635	SNRNP48	100	97.000	Ictidomys_tridecemlineatus
ENSG00000168566	SNRNP48	100	85.546	ENSJJAG00000011495	Snrnp48	100	85.546	Jaculus_jaculus
ENSG00000168566	SNRNP48	90	44.300	ENSKMAG00000016514	snrnp48	80	46.619	Kryptolebias_marmoratus
ENSG00000168566	SNRNP48	76	49.035	ENSLBEG00000026249	snrnp48	95	43.023	Labrus_bergylta
ENSG00000168566	SNRNP48	96	53.593	ENSLACG00000003958	SNRNP48	98	52.187	Latimeria_chalumnae
ENSG00000168566	SNRNP48	83	50.519	ENSLOCG00000004187	snrnp48	95	48.071	Lepisosteus_oculatus
ENSG00000168566	SNRNP48	100	89.086	ENSLAFG00000011152	SNRNP48	100	89.086	Loxodonta_africana
ENSG00000168566	SNRNP48	100	99.115	ENSMFAG00000045216	SNRNP48	100	99.115	Macaca_fascicularis
ENSG00000168566	SNRNP48	100	99.115	ENSMMUG00000014785	SNRNP48	100	99.115	Macaca_mulatta
ENSG00000168566	SNRNP48	100	98.820	ENSMNEG00000042269	SNRNP48	100	98.820	Macaca_nemestrina
ENSG00000168566	SNRNP48	100	99.115	ENSMLEG00000034004	SNRNP48	100	99.115	Mandrillus_leucophaeus
ENSG00000168566	SNRNP48	76	47.529	ENSMAMG00000018673	snrnp48	71	47.670	Mastacembelus_armatus
ENSG00000168566	SNRNP48	83	65.986	ENSMGAG00000006037	SNRNP48	99	65.753	Meleagris_gallopavo
ENSG00000168566	SNRNP48	100	89.086	ENSMAUG00000011944	Snrnp48	100	88.201	Mesocricetus_auratus
ENSG00000168566	SNRNP48	100	92.330	ENSMICG00000012497	SNRNP48	100	92.330	Microcebus_murinus
ENSG00000168566	SNRNP48	100	88.791	ENSMOCG00000015555	Snrnp48	100	87.906	Microtus_ochrogaster
ENSG00000168566	SNRNP48	54	52.973	ENSMMOG00000003072	-	58	52.973	Mola_mola
ENSG00000168566	SNRNP48	98	70.058	ENSMODG00000009996	SNRNP48	93	70.058	Monodelphis_domestica
ENSG00000168566	SNRNP48	74	49.606	ENSMALG00000005725	snrnp48	79	47.826	Monopterus_albus
ENSG00000168566	SNRNP48	100	87.611	MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.726	Mus_caroli
ENSG00000168566	SNRNP48	100	86.726	ENSMUSG00000021431	Snrnp48	100	85.841	Mus_musculus
ENSG00000168566	SNRNP48	100	87.021	MGP_PahariEiJ_G0019509	Snrnp48	100	86.136	Mus_pahari
ENSG00000168566	SNRNP48	100	86.136	MGP_SPRETEiJ_G0019321	Snrnp48	100	85.251	Mus_spretus
ENSG00000168566	SNRNP48	99	87.574	ENSNGAG00000004849	Snrnp48	99	87.574	Nannospalax_galili
ENSG00000168566	SNRNP48	85	39.062	ENSNBRG00000012127	snrnp48	84	45.238	Neolamprologus_brichardi
ENSG00000168566	SNRNP48	100	99.705	ENSNLEG00000011667	SNRNP48	100	99.705	Nomascus_leucogenys
ENSG00000168566	SNRNP48	95	78.019	ENSOPRG00000015471	SNRNP48	100	78.019	Ochotona_princeps
ENSG00000168566	SNRNP48	91	76.351	ENSODEG00000005816	-	95	75.000	Octodon_degus
ENSG00000168566	SNRNP48	74	47.656	ENSONIG00000001520	snrnp48	82	45.675	Oreochromis_niloticus
ENSG00000168566	SNRNP48	88	57.534	ENSOANG00000019888	-	100	62.981	Ornithorhynchus_anatinus
ENSG00000168566	SNRNP48	84	90.909	ENSOCUG00000005168	SNRNP48	100	90.461	Oryctolagus_cuniculus
ENSG00000168566	SNRNP48	88	46.753	ENSORLG00000015654	snrnp48	82	47.241	Oryzias_latipes
ENSG00000168566	SNRNP48	88	45.779	ENSORLG00020015976	snrnp48	70	46.552	Oryzias_latipes_hni
ENSG00000168566	SNRNP48	88	46.753	ENSORLG00015022379	snrnp48	71	47.586	Oryzias_latipes_hsok
ENSG00000168566	SNRNP48	83	47.222	ENSOMEG00000022007	snrnp48	82	47.917	Oryzias_melastigma
ENSG00000168566	SNRNP48	92	92.605	ENSOGAG00000005275	SNRNP48	96	92.744	Otolemur_garnettii
ENSG00000168566	SNRNP48	85	88.153	ENSOARG00000017319	SNRNP48	99	88.339	Ovis_aries
ENSG00000168566	SNRNP48	100	99.705	ENSPPAG00000032873	SNRNP48	100	99.705	Pan_paniscus
ENSG00000168566	SNRNP48	100	93.805	ENSPPRG00000004283	SNRNP48	100	93.805	Panthera_pardus
ENSG00000168566	SNRNP48	85	94.774	ENSPTIG00000013502	SNRNP48	99	95.053	Panthera_tigris_altaica
ENSG00000168566	SNRNP48	100	99.705	ENSPTRG00000017703	SNRNP48	100	99.705	Pan_troglodytes
ENSG00000168566	SNRNP48	100	99.115	ENSPANG00000000771	SNRNP48	100	99.115	Papio_anubis
ENSG00000168566	SNRNP48	94	45.797	ENSPKIG00000013703	snrnp48	70	44.643	Paramormyrops_kingsleyae
ENSG00000168566	SNRNP48	87	61.613	ENSPSIG00000002213	SNRNP48	92	63.051	Pelodiscus_sinensis
ENSG00000168566	SNRNP48	72	48.571	ENSPMGG00000008120	snrnp48	86	48.571	Periophthalmus_magnuspinnatus
ENSG00000168566	SNRNP48	100	89.086	ENSPEMG00000008872	Snrnp48	100	89.691	Peromyscus_maniculatus_bairdii
ENSG00000168566	SNRNP48	73	52.191	ENSPFOG00000003578	snrnp48	81	45.092	Poecilia_formosa
ENSG00000168566	SNRNP48	77	46.491	ENSPLAG00000002290	snrnp48	77	51.528	Poecilia_latipinna
ENSG00000168566	SNRNP48	73	51.394	ENSPMEG00000018033	snrnp48	81	44.479	Poecilia_mexicana
ENSG00000168566	SNRNP48	72	52.033	ENSPREG00000018541	snrnp48	80	48.936	Poecilia_reticulata
ENSG00000168566	SNRNP48	100	98.230	ENSPPYG00000016209	SNRNP48	100	98.230	Pongo_abelii
ENSG00000168566	SNRNP48	92	76.642	ENSPCAG00000011991	SNRNP48	99	71.161	Procavia_capensis
ENSG00000168566	SNRNP48	100	91.445	ENSPVAG00000002854	SNRNP48	100	91.445	Pteropus_vampyrus
ENSG00000168566	SNRNP48	85	39.062	ENSPNYG00000015399	snrnp48	92	45.918	Pundamilia_nyererei
ENSG00000168566	SNRNP48	100	87.906	ENSRNOG00000013756	Snrnp48	100	87.021	Rattus_norvegicus
ENSG00000168566	SNRNP48	93	97.826	ENSRBIG00000043856	SNRNP48	98	98.387	Rhinopithecus_bieti
ENSG00000168566	SNRNP48	100	98.820	ENSRROG00000043229	SNRNP48	100	98.820	Rhinopithecus_roxellana
ENSG00000168566	SNRNP48	100	98.230	ENSSBOG00000019486	SNRNP48	100	98.230	Saimiri_boliviensis_boliviensis
ENSG00000168566	SNRNP48	98	70.930	ENSSHAG00000014483	SNRNP48	99	70.930	Sarcophilus_harrisii
ENSG00000168566	SNRNP48	84	41.667	ENSSFOG00015006610	snrnp48	69	50.168	Scleropages_formosus
ENSG00000168566	SNRNP48	87	46.465	ENSSDUG00000014953	snrnp48	96	42.286	Seriola_dumerili
ENSG00000168566	SNRNP48	83	47.797	ENSSLDG00000005989	snrnp48	97	42.090	Seriola_lalandi_dorsalis
ENSG00000168566	SNRNP48	84	64.765	ENSSPUG00000006257	SNRNP48	84	65.188	Sphenodon_punctatus
ENSG00000168566	SNRNP48	78	48.540	ENSSPAG00000006454	snrnp48	80	47.857	Stegastes_partitus
ENSG00000168566	SNRNP48	83	64.605	ENSTGUG00000007575	SNRNP48	92	64.583	Taeniopygia_guttata
ENSG00000168566	SNRNP48	92	42.405	ENSTRUG00000007031	snrnp48	93	43.653	Takifugu_rubripes
ENSG00000168566	SNRNP48	76	45.385	ENSTNIG00000012977	-	72	46.721	Tetraodon_nigroviridis
ENSG00000168566	SNRNP48	95	83.099	ENSTBEG00000015620	SNRNP48	100	74.926	Tupaia_belangeri
ENSG00000168566	SNRNP48	100	90.265	ENSTTRG00000016715	SNRNP48	100	90.265	Tursiops_truncatus
ENSG00000168566	SNRNP48	100	92.920	ENSUAMG00000003690	SNRNP48	100	91.740	Ursus_americanus
ENSG00000168566	SNRNP48	85	87.805	ENSVPAG00000003557	SNRNP48	99	87.633	Vicugna_pacos
ENSG00000168566	SNRNP48	99	91.691	ENSVVUG00000004996	SNRNP48	99	91.691	Vulpes_vulpes
ENSG00000168566	SNRNP48	89	51.911	ENSXETG00000020447	snrnp48	99	48.588	Xenopus_tropicalis
ENSG00000168566	SNRNP48	77	44.737	ENSXCOG00000004478	snrnp48	69	51.064	Xiphophorus_couchianus
ENSG00000168566	SNRNP48	82	49.821	ENSXMAG00000013595	snrnp48	81	45.015	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	TAS	Process
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	IDA	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	15146077.	IDA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	IDA	Component
GO:0008380	RNA splicing	15146077.	IC	Process
GO:0046872	metal ion binding	-	IEA	Function