EuRBPDB

Description

RBDs

Literatures

Expression

Transcripts

Gene Model

Pathways

GWAS

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000169062 (Gene tree)
Gene ID: 65110
Gene Symbol: UPF3A
Alias: RENT3A|UPF3|HUPF3A
Full Name: UPF3A regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 24,234 bases
Position: chr13:114,281,584-114,305,817
Accession: 20332
RBP type: canonical RBP
Summary: This gene encodes a protein that is part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance. The encoded protein is one of two functional homologs to yeast Upf3p. mRNA surveillance detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD). When translation ends upstream from the last exon-exon junction, this triggers NMD to degrade mRNAs containing premature stop codons. This protein binds to the mRNA and remains bound after nuclear export, acting as a nucleocytoplasmic shuttling protein. It forms with Y14 a complex that binds specifically 20 nt upstream of exon-exon junctions. This gene is located on the long arm of chromosome 13. Several splice variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2017]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000364448	Smg4_UPF3	PF03467.15	2.7e-51	1	1
ENSP00000329592	Smg4_UPF3	PF03467.15	1.6e-28	1	2
ENSP00000329592	Smg4_UPF3	PF03467.15	1.6e-28	2	2
ENSP00000482320	Smg4_UPF3	PF03467.15	3e-09	1	1

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
23619768	Functional characterization of Upf1 targets in Schizosaccharomyces pombe.	RNA Biol	2013 Jun	Matia-Gonzalez AM	doi: 10.4161/rna.24569

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000479712	UPF3A-205	423	-	-	- (aa)	-	-
ENST00000492270	UPF3A-209	494	-	ENSP00000482320	105 (aa)	-	A0A087WZ33
ENST00000619079	UPF3A-212	2423	-	-	- (aa)	-	-
ENST00000480362	UPF3A-206	965	NR_148485	-	- (aa)	-	-
ENST00000481131	UPF3A-207	678	-	-	- (aa)	-	-
ENST00000484246	UPF3A-208	699	-	-	- (aa)	-	-
ENST00000474056	UPF3A-203	748	-	-	- (aa)	-	-
ENST00000618700	UPF3A-211	1210	-	-	- (aa)	-	-
ENST00000475218	UPF3A-204	1791	-	-	- (aa)	-	-
ENST00000493727	UPF3A-210	937	-	-	- (aa)	-	-
ENST00000375299	UPF3A-202	2387	XM_006719991	ENSP00000364448	476 (aa)	XP_006720054	Q9H1J1
ENST00000351487	UPF3A-201	2235	XM_005266202	ENSP00000329592	443 (aa)	XP_005266259	Q9H1J1

Gene Model

Click here to download ENSG00000169062's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa03013	RNA transport	KEGG
hsa03015	mRNA surveillance pathway	KEGG

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000169062	rs112998813	13	114294254	C	Nodular sclerosis Hodgkin lymphoma	29196614	[1.23-1.56]	1.39	EFO_0004708
ENSG00000169062	rs3752105	13	114281830	?	Cardiovascular disease	30595370			EFO_0000319
ENSG00000169062	rs7320104	13	114294290	G	Pulse pressure	30578418	[0.14-0.26] mmHg decrease	0.2005	EFO_0005763

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000169062's network

* RBP PPI network refers to all genes directly bind to RBP

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000169062	UPF3A	51	64.032	ENSG00000125351	UPF3B	76	70.122

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000169062	UPF3A	90	57.870	ENSAPOG00000013484	upf3a	89	57.639	Acanthochromis_polyacanthus
ENSG00000169062	UPF3A	85	48.712	ENSAPOG00000012775	upf3b	88	50.240	Acanthochromis_polyacanthus
ENSG00000169062	UPF3A	93	74.561	ENSAMEG00000004259	UPF3A	99	74.561	Ailuropoda_melanoleuca
ENSG00000169062	UPF3A	89	47.817	ENSAMEG00000000163	UPF3B	89	49.652	Ailuropoda_melanoleuca
ENSG00000169062	UPF3A	90	54.305	ENSACIG00000020468	upf3a	70	80.952	Amphilophus_citrinellus
ENSG00000169062	UPF3A	90	57.639	ENSAOCG00000020784	upf3a	88	57.407	Amphiprion_ocellaris
ENSG00000169062	UPF3A	53	59.004	ENSAOCG00000000706	upf3b	88	48.681	Amphiprion_ocellaris
ENSG00000169062	UPF3A	90	57.639	ENSAPEG00000003519	upf3a	88	57.407	Amphiprion_percula
ENSG00000169062	UPF3A	50	62.400	ENSAPEG00000005545	upf3b	88	50.360	Amphiprion_percula
ENSG00000169062	UPF3A	91	58.199	ENSATEG00000005843	upf3a	88	57.968	Anabas_testudineus
ENSG00000169062	UPF3A	83	49.275	ENSATEG00000018742	upf3b	88	50.242	Anabas_testudineus
ENSG00000169062	UPF3A	88	44.470	ENSACAG00000003625	UPF3B	86	50.721	Anolis_carolinensis
ENSG00000169062	UPF3A	83	68.861	ENSACAG00000001540	UPF3A	93	69.409	Anolis_carolinensis
ENSG00000169062	UPF3A	50	49.057	ENSANAG00000033169	-	55	68.116	Aotus_nancymaae
ENSG00000169062	UPF3A	82	50.122	ENSANAG00000021894	-	77	69.697	Aotus_nancymaae
ENSG00000169062	UPF3A	99	90.385	ENSANAG00000021713	UPF3A	100	88.866	Aotus_nancymaae
ENSG00000169062	UPF3A	82	44.888	ENSANAG00000025598	-	70	72.464	Aotus_nancymaae
ENSG00000169062	UPF3A	90	54.889	ENSACLG00000026274	upf3a	89	54.889	Astatotilapia_calliptera
ENSG00000169062	UPF3A	96	54.661	ENSAMXG00000002608	upf3a	99	54.025	Astyanax_mexicanus
ENSG00000169062	UPF3A	99	74.038	ENSBTAG00000047365	-	95	83.810	Bos_taurus
ENSG00000169062	UPF3A	82	50.122	ENSCJAG00000004975	UPF3B	77	69.091	Callithrix_jacchus
ENSG00000169062	UPF3A	100	90.756	ENSCJAG00000019102	UPF3A	100	90.756	Callithrix_jacchus
ENSG00000169062	UPF3A	99	75.962	ENSCAFG00000006504	UPF3A	100	73.605	Canis_familiaris
ENSG00000169062	UPF3A	86	48.649	ENSCAFG00000018426	UPF3B	86	51.589	Canis_familiaris
ENSG00000169062	UPF3A	99	77.885	ENSCAFG00020014268	UPF3A	97	74.249	Canis_lupus_dingo
ENSG00000169062	UPF3A	86	45.390	ENSCAFG00020004074	UPF3B	72	76.712	Canis_lupus_dingo
ENSG00000169062	UPF3A	86	47.523	ENSCHIG00000000247	-	89	47.523	Capra_hircus
ENSG00000169062	UPF3A	84	39.750	ENSCHIG00000011454	-	84	38.619	Capra_hircus
ENSG00000169062	UPF3A	96	72.668	ENSCHIG00000008682	UPF3A	94	72.746	Capra_hircus
ENSG00000169062	UPF3A	82	48.815	ENSCHIG00000018011	-	87	48.578	Capra_hircus
ENSG00000169062	UPF3A	77	69.761	ENSTSYG00000001918	UPF3A	100	69.761	Carlito_syrichta
ENSG00000169062	UPF3A	86	49.883	ENSTSYG00000014690	UPF3B	76	64.706	Carlito_syrichta
ENSG00000169062	UPF3A	99	68.269	ENSCPOG00000006824	UPF3A	93	68.537	Cavia_porcellus
ENSG00000169062	UPF3A	99	93.269	ENSCCAG00000018406	UPF3A	100	92.017	Cebus_capucinus
ENSG00000169062	UPF3A	81	38.601	ENSCCAG00000029813	-	84	38.619	Cebus_capucinus
ENSG00000169062	UPF3A	82	50.611	ENSCATG00000017506	UPF3B	77	69.697	Cercocebus_atys
ENSG00000169062	UPF3A	99	95.192	ENSCATG00000029733	UPF3A	100	93.697	Cercocebus_atys
ENSG00000169062	UPF3A	62	56.013	ENSCLAG00000003260	UPF3B	85	50.971	Chinchilla_lanigera
ENSG00000169062	UPF3A	98	66.990	ENSCLAG00000000093	-	97	73.050	Chinchilla_lanigera
ENSG00000169062	UPF3A	99	95.192	ENSCSAG00000017388	UPF3A	100	91.441	Chlorocebus_sabaeus
ENSG00000169062	UPF3A	84	81.308	ENSCHOG00000006918	-	59	75.676	Choloepus_hoffmanni
ENSG00000169062	UPF3A	87	44.056	ENSCPBG00000020685	UPF3B	89	45.433	Chrysemys_picta_bellii
ENSG00000169062	UPF3A	99	74.038	ENSCGRG00001017387	Upf3a	99	70.507	Cricetulus_griseus_chok1gshd
ENSG00000169062	UPF3A	55	52.518	ENSCGRG00001006858	-	85	50.485	Cricetulus_griseus_chok1gshd
ENSG00000169062	UPF3A	55	53.069	ENSCGRG00001013643	-	65	56.846	Cricetulus_griseus_chok1gshd
ENSG00000169062	UPF3A	94	73.737	ENSCGRG00000001468	Upf3a	99	70.396	Cricetulus_griseus_crigri
ENSG00000169062	UPF3A	81	48.768	ENSCSEG00000002046	upf3b	87	49.650	Cynoglossus_semilaevis
ENSG00000169062	UPF3A	89	57.604	ENSCSEG00000005106	upf3a	88	57.208	Cynoglossus_semilaevis
ENSG00000169062	UPF3A	90	57.809	ENSCVAG00000022333	upf3a	88	57.809	Cyprinodon_variegatus
ENSG00000169062	UPF3A	99	53.498	ENSDARG00000069297	upf3a	99	53.498	Danio_rerio
ENSG00000169062	UPF3A	50	61.600	ENSDARG00000000489	upf3b	90	43.088	Danio_rerio
ENSG00000169062	UPF3A	89	74.023	ENSDNOG00000034391	UPF3A	98	74.253	Dasypus_novemcinctus
ENSG00000169062	UPF3A	86	47.439	ENSDNOG00000008665	UPF3B	85	48.578	Dasypus_novemcinctus
ENSG00000169062	UPF3A	82	45.567	ENSDORG00000006077	Upf3b	84	50.369	Dipodomys_ordii
ENSG00000169062	UPF3A	99	71.963	ENSETEG00000010110	UPF3A	99	65.756	Echinops_telfairi
ENSG00000169062	UPF3A	86	46.336	ENSEASG00005012919	UPF3B	79	73.913	Equus_asinus_asinus
ENSG00000169062	UPF3A	99	78.846	ENSEASG00005021884	UPF3A	100	73.402	Equus_asinus_asinus
ENSG00000169062	UPF3A	99	79.808	ENSECAG00000017141	UPF3A	100	73.402	Equus_caballus
ENSG00000169062	UPF3A	86	46.336	ENSECAG00000016947	UPF3B	80	65.714	Equus_caballus
ENSG00000169062	UPF3A	95	55.870	ENSELUG00000011050	upf3a	91	55.120	Esox_lucius
ENSG00000169062	UPF3A	99	75.962	ENSFCAG00000014602	UPF3A	99	75.052	Felis_catus
ENSG00000169062	UPF3A	82	49.392	ENSFCAG00000004388	UPF3B	84	50.605	Felis_catus
ENSG00000169062	UPF3A	91	47.380	ENSFDAG00000018869	UPF3B	84	50.488	Fukomys_damarensis
ENSG00000169062	UPF3A	98	41.748	ENSFHEG00000010418	upf3a	95	54.301	Fundulus_heteroclitus
ENSG00000169062	UPF3A	50	60.377	ENSFHEG00000017895	upf3b	88	43.584	Fundulus_heteroclitus
ENSG00000169062	UPF3A	70	60.119	ENSGMOG00000019615	upf3a	100	60.119	Gadus_morhua
ENSG00000169062	UPF3A	82	46.247	ENSGMOG00000001621	upf3b	89	46.759	Gadus_morhua
ENSG00000169062	UPF3A	72	57.500	ENSGALG00000016815	-	98	71.028	Gallus_gallus
ENSG00000169062	UPF3A	82	41.832	ENSGAFG00000000829	upf3b	88	43.627	Gambusia_affinis
ENSG00000169062	UPF3A	92	56.591	ENSGAFG00000021170	upf3a	90	56.591	Gambusia_affinis
ENSG00000169062	UPF3A	70	59.347	ENSGACG00000001972	upf3a	100	59.050	Gasterosteus_aculeatus
ENSG00000169062	UPF3A	80	44.472	ENSGACG00000017435	upf3b	88	45.894	Gasterosteus_aculeatus
ENSG00000169062	UPF3A	84	43.192	ENSGAGG00000001219	UPF3B	87	47.304	Gopherus_agassizii
ENSG00000169062	UPF3A	87	93.523	ENSGGOG00000043074	-	88	93.523	Gorilla_gorilla
ENSG00000169062	UPF3A	100	98.319	ENSGGOG00000015428	UPF3A	100	98.319	Gorilla_gorilla
ENSG00000169062	UPF3A	51	64.032	ENSGGOG00000023995	UPF3B	84	50.122	Gorilla_gorilla
ENSG00000169062	UPF3A	94	86.842	ENSGGOG00000041219	-	91	93.867	Gorilla_gorilla
ENSG00000169062	UPF3A	95	55.702	ENSHBUG00000011325	upf3a	88	57.176	Haplochromis_burtoni
ENSG00000169062	UPF3A	55	56.897	ENSHGLG00000011189	-	83	49.432	Heterocephalus_glaber_female
ENSG00000169062	UPF3A	86	49.199	ENSHGLG00000019582	-	84	50.244	Heterocephalus_glaber_female
ENSG00000169062	UPF3A	98	74.757	ENSHGLG00000001544	UPF3A	90	71.611	Heterocephalus_glaber_female
ENSG00000169062	UPF3A	98	74.757	ENSHGLG00100013244	UPF3A	90	71.611	Heterocephalus_glaber_male
ENSG00000169062	UPF3A	86	48.951	ENSHGLG00100002042	-	84	50.614	Heterocephalus_glaber_male
ENSG00000169062	UPF3A	55	56.897	ENSHGLG00100001889	-	83	49.138	Heterocephalus_glaber_male
ENSG00000169062	UPF3A	82	47.654	ENSHCOG00000017004	upf3b	87	49.015	Hippocampus_comes
ENSG00000169062	UPF3A	88	50.000	ENSHCOG00000013985	upf3a	71	75.000	Hippocampus_comes
ENSG00000169062	UPF3A	96	55.677	ENSIPUG00000023450	upf3a	93	55.677	Ictalurus_punctatus
ENSG00000169062	UPF3A	86	48.837	ENSSTOG00000001101	UPF3B	84	51.345	Ictidomys_tridecemlineatus
ENSG00000169062	UPF3A	99	80.769	ENSSTOG00000030282	-	95	76.652	Ictidomys_tridecemlineatus
ENSG00000169062	UPF3A	53	63.158	ENSJJAG00000000053	Upf3b	84	50.971	Jaculus_jaculus
ENSG00000169062	UPF3A	99	70.192	ENSJJAG00000018099	-	98	78.571	Jaculus_jaculus
ENSG00000169062	UPF3A	50	62.264	ENSKMAG00000020300	upf3b	88	50.966	Kryptolebias_marmoratus
ENSG00000169062	UPF3A	91	57.044	ENSKMAG00000004381	upf3a	88	56.813	Kryptolebias_marmoratus
ENSG00000169062	UPF3A	50	58.800	ENSLBEG00000028689	upf3b	54	59.600	Labrus_bergylta
ENSG00000169062	UPF3A	90	53.704	ENSLBEG00000021570	upf3a	89	52.315	Labrus_bergylta
ENSG00000169062	UPF3A	82	45.673	ENSLACG00000008691	UPF3B	89	51.651	Latimeria_chalumnae
ENSG00000169062	UPF3A	99	56.695	ENSLOCG00000002665	upf3a	98	56.695	Lepisosteus_oculatus
ENSG00000169062	UPF3A	50	62.753	ENSLOCG00000015238	upf3b	89	48.522	Lepisosteus_oculatus
ENSG00000169062	UPF3A	86	59.770	ENSLAFG00000023358	UPF3A	99	59.770	Loxodonta_africana
ENSG00000169062	UPF3A	83	49.512	ENSLAFG00000001267	UPF3B	84	49.512	Loxodonta_africana
ENSG00000169062	UPF3A	82	50.611	ENSMFAG00000045414	UPF3B	77	69.697	Macaca_fascicularis
ENSG00000169062	UPF3A	100	88.050	ENSMFAG00000045016	UPF3A	100	88.050	Macaca_fascicularis
ENSG00000169062	UPF3A	82	50.611	ENSMMUG00000020222	UPF3B	77	69.697	Macaca_mulatta
ENSG00000169062	UPF3A	100	89.076	ENSMMUG00000007449	UPF3A	100	88.445	Macaca_mulatta
ENSG00000169062	UPF3A	99	84.394	ENSMNEG00000036402	UPF3A	100	84.394	Macaca_nemestrina
ENSG00000169062	UPF3A	82	50.611	ENSMNEG00000039794	UPF3B	77	69.697	Macaca_nemestrina
ENSG00000169062	UPF3A	82	50.611	ENSMLEG00000010999	UPF3B	77	69.697	Mandrillus_leucophaeus
ENSG00000169062	UPF3A	86	92.892	ENSMLEG00000014726	UPF3A	100	92.781	Mandrillus_leucophaeus
ENSG00000169062	UPF3A	91	55.902	ENSMAMG00000018364	upf3a	89	55.679	Mastacembelus_armatus
ENSG00000169062	UPF3A	90	54.889	ENSMZEG00005021571	upf3a	89	54.889	Maylandia_zebra
ENSG00000169062	UPF3A	82	66.667	ENSMGAG00000014837	UPF3A	99	66.667	Meleagris_gallopavo
ENSG00000169062	UPF3A	88	47.884	ENSMAUG00000008705	Upf3b	84	52.913	Mesocricetus_auratus
ENSG00000169062	UPF3A	99	75.962	ENSMICG00000042420	-	94	77.551	Microcebus_murinus
ENSG00000169062	UPF3A	99	74.038	ENSMOCG00000000550	Upf3a	91	75.522	Microtus_ochrogaster
ENSG00000169062	UPF3A	93	40.966	ENSMOCG00000017893	Upf3b	87	48.055	Microtus_ochrogaster
ENSG00000169062	UPF3A	99	52.352	ENSMMOG00000019751	upf3a	87	55.787	Mola_mola
ENSG00000169062	UPF3A	81	52.217	ENSMODG00000010232	UPF3B	93	53.448	Monodelphis_domestica
ENSG00000169062	UPF3A	87	69.860	ENSMODG00000003159	UPF3A	99	70.188	Monodelphis_domestica
ENSG00000169062	UPF3A	87	42.725	MGP_CAROLIEiJ_G0032999	Upf3b	86	49.400	Mus_caroli
ENSG00000169062	UPF3A	99	72.115	MGP_CAROLIEiJ_G0030848	Upf3a	99	69.585	Mus_caroli
ENSG00000169062	UPF3A	57	55.072	ENSMUSG00000036572	Upf3b	86	49.640	Mus_musculus
ENSG00000169062	UPF3A	99	73.077	ENSMUSG00000038398	Upf3a	99	70.276	Mus_musculus
ENSG00000169062	UPF3A	87	42.725	MGP_PahariEiJ_G0031543	Upf3b	86	49.400	Mus_pahari
ENSG00000169062	UPF3A	99	70.192	MGP_PahariEiJ_G0021311	Upf3a	99	70.115	Mus_pahari
ENSG00000169062	UPF3A	99	73.077	MGP_SPRETEiJ_G0031958	Upf3a	99	69.816	Mus_spretus
ENSG00000169062	UPF3A	57	55.072	MGP_SPRETEiJ_G0034152	Upf3b	86	49.640	Mus_spretus
ENSG00000169062	UPF3A	99	78.846	ENSMPUG00000009139	UPF3A	96	75.107	Mustela_putorius_furo
ENSG00000169062	UPF3A	82	50.980	ENSMPUG00000001531	UPF3B	86	51.834	Mustela_putorius_furo
ENSG00000169062	UPF3A	86	44.601	ENSMLUG00000010821	UPF3B	89	49.652	Myotis_lucifugus
ENSG00000169062	UPF3A	86	74.109	ENSMLUG00000015905	UPF3A	100	74.109	Myotis_lucifugus
ENSG00000169062	UPF3A	99	75.000	ENSNGAG00000019314	Upf3a	99	72.120	Nannospalax_galili
ENSG00000169062	UPF3A	95	55.361	ENSNBRG00000000828	upf3a	88	56.813	Neolamprologus_brichardi
ENSG00000169062	UPF3A	100	97.484	ENSNLEG00000007563	UPF3A	100	97.484	Nomascus_leucogenys
ENSG00000169062	UPF3A	51	64.032	ENSNLEG00000014897	UPF3B	84	49.878	Nomascus_leucogenys
ENSG00000169062	UPF3A	65	71.951	ENSOPRG00000008846	-	56	73.577	Ochotona_princeps
ENSG00000169062	UPF3A	87	48.624	ENSODEG00000002186	-	84	50.367	Octodon_degus
ENSG00000169062	UPF3A	53	58.929	ENSODEG00000007164	-	70	56.886	Octodon_degus
ENSG00000169062	UPF3A	99	65.385	ENSODEG00000009176	-	86	74.771	Octodon_degus
ENSG00000169062	UPF3A	91	56.322	ENSONIG00000006817	upf3a	88	56.322	Oreochromis_niloticus
ENSG00000169062	UPF3A	75	71.557	ENSOANG00000006985	-	95	71.557	Ornithorhynchus_anatinus
ENSG00000169062	UPF3A	86	43.750	ENSOANG00000002594	-	98	43.925	Ornithorhynchus_anatinus
ENSG00000169062	UPF3A	88	47.609	ENSOCUG00000010213	UPF3B	89	48.198	Oryctolagus_cuniculus
ENSG00000169062	UPF3A	98	60.082	ENSOCUG00000008450	UPF3A	99	60.082	Oryctolagus_cuniculus
ENSG00000169062	UPF3A	51	51.406	ENSORLG00000001026	upf3b	88	40.831	Oryzias_latipes
ENSG00000169062	UPF3A	89	57.209	ENSORLG00000010911	upf3a	83	59.500	Oryzias_latipes
ENSG00000169062	UPF3A	89	56.573	ENSORLG00020014317	upf3a	83	58.838	Oryzias_latipes_hni
ENSG00000169062	UPF3A	51	51.807	ENSORLG00020003758	upf3b	88	40.831	Oryzias_latipes_hni
ENSG00000169062	UPF3A	51	51.807	ENSORLG00015012954	upf3b	88	40.587	Oryzias_latipes_hsok
ENSG00000169062	UPF3A	90	55.581	ENSOMEG00000014425	upf3a	83	58.586	Oryzias_melastigma
ENSG00000169062	UPF3A	86	44.368	ENSOGAG00000033003	-	87	51.214	Otolemur_garnettii
ENSG00000169062	UPF3A	99	71.154	ENSOGAG00000004788	UPF3A	99	75.540	Otolemur_garnettii
ENSG00000169062	UPF3A	89	48.035	ENSOGAG00000004643	-	89	50.116	Otolemur_garnettii
ENSG00000169062	UPF3A	82	44.670	ENSOARG00000007869	-	92	42.640	Ovis_aries
ENSG00000169062	UPF3A	94	72.406	ENSOARG00000009004	UPF3A	96	72.406	Ovis_aries
ENSG00000169062	UPF3A	86	47.204	ENSOARG00000016051	-	89	47.204	Ovis_aries
ENSG00000169062	UPF3A	100	97.689	ENSPPAG00000042267	UPF3A	100	97.689	Pan_paniscus
ENSG00000169062	UPF3A	51	64.032	ENSPPAG00000040390	UPF3B	84	50.122	Pan_paniscus
ENSG00000169062	UPF3A	82	50.367	ENSPPRG00000023536	UPF3B	84	50.611	Panthera_pardus
ENSG00000169062	UPF3A	99	75.962	ENSPPRG00000025062	UPF3A	99	74.633	Panthera_pardus
ENSG00000169062	UPF3A	51	64.032	ENSPTIG00000015264	UPF3B	85	49.645	Panthera_tigris_altaica
ENSG00000169062	UPF3A	94	85.885	ENSPTRG00000041187	-	91	91.733	Pan_troglodytes
ENSG00000169062	UPF3A	95	83.255	ENSPTRG00000041835	-	90	90.667	Pan_troglodytes
ENSG00000169062	UPF3A	90	87.469	ENSPTRG00000051640	-	97	87.469	Pan_troglodytes
ENSG00000169062	UPF3A	100	98.529	ENSPTRG00000006073	UPF3A	100	98.529	Pan_troglodytes
ENSG00000169062	UPF3A	51	64.032	ENSPTRG00000022228	UPF3B	84	50.122	Pan_troglodytes
ENSG00000169062	UPF3A	82	50.611	ENSPANG00000000900	UPF3B	77	69.697	Papio_anubis
ENSG00000169062	UPF3A	100	92.437	ENSPANG00000004346	UPF3A	100	92.437	Papio_anubis
ENSG00000169062	UPF3A	83	49.289	ENSPKIG00000019226	upf3b	75	70.940	Paramormyrops_kingsleyae
ENSG00000169062	UPF3A	96	52.675	ENSPKIG00000004422	upf3a	91	56.145	Paramormyrops_kingsleyae
ENSG00000169062	UPF3A	86	69.586	ENSPSIG00000007468	UPF3A	100	69.586	Pelodiscus_sinensis
ENSG00000169062	UPF3A	50	54.717	ENSPMGG00000016067	upf3b	59	63.804	Periophthalmus_magnuspinnatus
ENSG00000169062	UPF3A	95	53.066	ENSPMGG00000012696	upf3a	91	52.532	Periophthalmus_magnuspinnatus
ENSG00000169062	UPF3A	99	70.192	ENSPEMG00000019968	-	99	71.659	Peromyscus_maniculatus_bairdii
ENSG00000169062	UPF3A	89	42.952	ENSPEMG00000012352	Upf3b	86	50.476	Peromyscus_maniculatus_bairdii
ENSG00000169062	UPF3A	79	77.155	ENSPCIG00000019590	-	100	73.047	Phascolarctos_cinereus
ENSG00000169062	UPF3A	85	49.769	ENSPCIG00000028914	UPF3B	84	47.500	Phascolarctos_cinereus
ENSG00000169062	UPF3A	92	57.403	ENSPFOG00000013222	upf3a	90	57.403	Poecilia_formosa
ENSG00000169062	UPF3A	82	41.832	ENSPLAG00000005105	upf3b	88	47.188	Poecilia_latipinna
ENSG00000169062	UPF3A	82	41.832	ENSPLAG00000019922	upf3b	88	43.627	Poecilia_latipinna
ENSG00000169062	UPF3A	92	56.364	ENSPLAG00000011960	upf3a	91	56.364	Poecilia_latipinna
ENSG00000169062	UPF3A	92	54.902	ENSPMEG00000000836	upf3a	90	54.902	Poecilia_mexicana
ENSG00000169062	UPF3A	82	41.832	ENSPMEG00000023532	upf3b	88	43.627	Poecilia_mexicana
ENSG00000169062	UPF3A	78	50.000	ENSPREG00000005566	upf3a	83	64.706	Poecilia_reticulata
ENSG00000169062	UPF3A	100	97.689	ENSPPYG00000005536	UPF3A	100	97.689	Pongo_abelii
ENSG00000169062	UPF3A	86	48.667	ENSPCAG00000009464	UPF3B	85	50.118	Procavia_capensis
ENSG00000169062	UPF3A	99	72.222	ENSPCAG00000013124	UPF3A	79	69.912	Procavia_capensis
ENSG00000169062	UPF3A	86	49.074	ENSPCOG00000021960	UPF3B	84	50.732	Propithecus_coquereli
ENSG00000169062	UPF3A	99	75.962	ENSPVAG00000005656	UPF3A	100	70.293	Pteropus_vampyrus
ENSG00000169062	UPF3A	85	40.271	ENSPVAG00000014075	UPF3B	90	40.225	Pteropus_vampyrus
ENSG00000169062	UPF3A	90	54.889	ENSPNYG00000011289	upf3a	89	54.889	Pundamilia_nyererei
ENSG00000169062	UPF3A	85	47.465	ENSPNAG00000021528	upf3b	90	42.654	Pygocentrus_nattereri
ENSG00000169062	UPF3A	96	55.435	ENSPNAG00000019532	upf3a	93	55.435	Pygocentrus_nattereri
ENSG00000169062	UPF3A	57	55.072	ENSRNOG00000039994	Upf3b	86	49.038	Rattus_norvegicus
ENSG00000169062	UPF3A	99	71.154	ENSRNOG00000017397	Upf3a	98	71.220	Rattus_norvegicus
ENSG00000169062	UPF3A	88	92.363	ENSRBIG00000034007	UPF3A	97	91.954	Rhinopithecus_bieti
ENSG00000169062	UPF3A	86	93.120	ENSRROG00000012212	UPF3A	85	93.120	Rhinopithecus_roxellana
ENSG00000169062	UPF3A	51	64.032	ENSRROG00000041031	UPF3B	77	69.697	Rhinopithecus_roxellana
ENSG00000169062	UPF3A	82	49.878	ENSSBOG00000019740	UPF3B	78	70.552	Saimiri_boliviensis_boliviensis
ENSG00000169062	UPF3A	100	84.034	ENSSBOG00000029989	UPF3A	100	84.034	Saimiri_boliviensis_boliviensis
ENSG00000169062	UPF3A	81	53.580	ENSSHAG00000008634	UPF3B	83	53.580	Sarcophilus_harrisii
ENSG00000169062	UPF3A	88	70.309	ENSSHAG00000009895	UPF3A	100	70.309	Sarcophilus_harrisii
ENSG00000169062	UPF3A	52	59.449	ENSSFOG00015005614	upf3b	89	47.549	Scleropages_formosus
ENSG00000169062	UPF3A	88	57.007	ENSSFOG00015021851	upf3a	89	57.007	Scleropages_formosus
ENSG00000169062	UPF3A	51	62.550	ENSSMAG00000012913	upf3b	89	47.786	Scophthalmus_maximus
ENSG00000169062	UPF3A	90	55.580	ENSSDUG00000009680	upf3a	89	55.357	Seriola_dumerili
ENSG00000169062	UPF3A	90	57.639	ENSSLDG00000009700	upf3a	88	57.407	Seriola_lalandi_dorsalis
ENSG00000169062	UPF3A	75	94.286	ENSSARG00000007262	UPF3A	97	62.095	Sorex_araneus
ENSG00000169062	UPF3A	84	45.192	ENSSPUG00000013082	UPF3B	84	44.750	Sphenodon_punctatus
ENSG00000169062	UPF3A	51	61.905	ENSSPAG00000009989	upf3b	88	49.515	Stegastes_partitus
ENSG00000169062	UPF3A	91	51.039	ENSSPAG00000007938	upf3a	74	80.745	Stegastes_partitus
ENSG00000169062	UPF3A	86	48.724	ENSSSCG00000012617	UPF3B	89	48.724	Sus_scrofa
ENSG00000169062	UPF3A	100	72.577	ENSSSCG00000024679	UPF3A	97	73.116	Sus_scrofa
ENSG00000169062	UPF3A	85	43.705	ENSTGUG00000003413	UPF3B	95	49.526	Taeniopygia_guttata
ENSG00000169062	UPF3A	83	71.827	ENSTGUG00000009493	UPF3A	99	71.756	Taeniopygia_guttata
ENSG00000169062	UPF3A	82	49.510	ENSTRUG00000010645	upf3b	89	49.515	Takifugu_rubripes
ENSG00000169062	UPF3A	95	54.626	ENSTRUG00000012730	upf3a	91	54.626	Takifugu_rubripes
ENSG00000169062	UPF3A	83	52.369	ENSTNIG00000014973	upf3a	99	52.261	Tetraodon_nigroviridis
ENSG00000169062	UPF3A	69	61.702	ENSTBEG00000017186	-	100	61.702	Tupaia_belangeri
ENSG00000169062	UPF3A	100	65.063	ENSTTRG00000015414	UPF3A	100	65.063	Tursiops_truncatus
ENSG00000169062	UPF3A	86	45.093	ENSUAMG00000024565	UPF3B	79	72.464	Ursus_americanus
ENSG00000169062	UPF3A	85	42.373	ENSUMAG00000002150	UPF3B	89	43.914	Ursus_maritimus
ENSG00000169062	UPF3A	86	74.328	ENSVPAG00000003525	UPF3A	100	74.328	Vicugna_pacos
ENSG00000169062	UPF3A	79	45.542	ENSVPAG00000009971	UPF3B	98	45.542	Vicugna_pacos
ENSG00000169062	UPF3A	99	72.115	ENSVVUG00000013538	UPF3A	94	71.459	Vulpes_vulpes
ENSG00000169062	UPF3A	86	45.390	ENSVVUG00000011594	UPF3B	72	76.712	Vulpes_vulpes
ENSG00000169062	UPF3A	81	46.348	ENSXETG00000007440	upf3b	71	70.122	Xenopus_tropicalis
ENSG00000169062	UPF3A	82	57.653	ENSXETG00000002572	upf3a	91	57.908	Xenopus_tropicalis
ENSG00000169062	UPF3A	79	49.398	ENSXCOG00000018591	upf3a	69	49.495	Xiphophorus_couchianus
ENSG00000169062	UPF3A	82	42.079	ENSXMAG00000013680	upf3b	88	43.137	Xiphophorus_maculatus
ENSG00000169062	UPF3A	92	56.818	ENSXMAG00000013452	upf3a	90	56.818	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	16601204.	IDA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	11163187.	NAS	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	TAS	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	11163187.11546873.11546874.12417715.14636577.19503078.20479275.	IPI	Function
GO:0005634	nucleus	-	IDA	Component
GO:0005634	nucleus	11163187.	NAS	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	11163187.	NAS	Component
GO:0005829	cytosol	-	IDA	Component
GO:0005829	cytosol	-	TAS	Component
GO:0006913	nucleocytoplasmic transport	-	IEA	Process
GO:0017056	structural constituent of nuclear pore	11163187.	NAS	Function
GO:0035145	exon-exon junction complex	16601204.	IDA	Component
GO:0035145	exon-exon junction complex	11546873.	TAS	Component
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0042162	telomeric DNA binding	17916692.	IDA	Function
GO:0043231	intracellular membrane-bounded organelle	-	IDA	Component
GO:0045727	positive regulation of translation	21873635.	IBA	Process
GO:0045727	positive regulation of translation	16601204.	IDA	Process
GO:0051028	mRNA transport	-	IEA	Process