EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000169251 (Gene tree)
Gene ID
51068
Gene Symbol
NMD3
Alias
CGI-07
Full Name
NMD3 ribosome export adaptor
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
148,837 bases
Position
chr3:161,104,696-161,253,532
Accession
24250
RBP type
canonical RBP
Summary
Ribosomal 40S and 60S subunits associate in the nucleolus and are exported to the cytoplasm. The protein encoded by this gene is involved in the passage of the 60S subunit through the nuclear pore complex and into the cytoplasm. Several transcript variants exist for this gene, but the full-length natures of only two have been described to date. [provided by RefSeq, Feb 2016]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000307525NMD3PF04981.134.2e-8011
ENSP00000419004NMD3PF04981.134.2e-8011
ENSP00000417559NMD3PF04981.134.7e-8011
ENSP00000418908NMD3PF04981.131.1e-6811
ENSP00000419030NMD3PF04981.131.1e-6811
ENSP00000419647NMD3PF04981.135.2e-4711
ENSP00000418980NMD3PF04981.133e-4211
ENSP00000418852NMD3PF04981.136.3e-2011
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000351193NMD3-2013049XM_005247511ENSP00000307525503 (aa)XP_005247568Q96D46
ENST00000493066NMD3-210746-ENSP00000419030218 (aa)-C9J0B9
ENST00000460469NMD3-2023061-ENSP00000419004503 (aa)-Q96D46
ENST00000476237NMD3-208685-ENSP00000419647162 (aa)-C9K0C2
ENST00000468606NMD3-205589-ENSP0000041885298 (aa)-C9IY70
ENST00000478160NMD3-209606--- (aa)--
ENST00000473909NMD3-207600--- (aa)--
ENST00000460503NMD3-203547-ENSP00000418980155 (aa)-C9IZW9
ENST00000472947NMD3-2062378-ENSP00000417559529 (aa)-C9JA08
ENST00000463518NMD3-2041077-ENSP00000418908218 (aa)-C9J0B9
Gene Model
Click here to download ENSG00000169251's gene model file
Pathways
Pathway IDPathway NameSource
hsa03008Ribosome biogenesis in eukaryotesKEGG
hsa03013RNA transportKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000169251Body Weight1.28706112571761E-617903300
ENSG00000169251Tumor Necrosis Factor-alpha1.9720000E-005-
ENSG00000169251Vitamin B 62.8090000E-005-
ENSG00000169251Bronchodilator Agents8E-726634245
ENSG00000169251Forced Expiratory Volume8E-726634245
ENSG00000169251Bronchodilator Agents3E-626634245
ENSG00000169251Lung Volume Measurements3E-626634245
ENSG00000169251Bronchodilator Agents9E-726634245
ENSG00000169251Forced Expiratory Volume9E-726634245
ENSG00000169251Bronchodilator Agents4E-626634245
ENSG00000169251Lung Volume Measurements4E-626634245
ENSG00000169251Circadian Rhythm9E-626835600
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000169251rs76338573161127154CEducational attainment (years of education)27225129NR unit decrease0.014272967EFO_0004784
ENSG00000169251rs1922944963161113786TPost bronchodilator FEV1/FVC ratio26634245unit increase0.449GO_0097366|EFO_0004713
ENSG00000169251rs1400142243161238986GPost bronchodilator FEV1/FVC ratio26634245unit increase0.436GO_0097366|EFO_0004713
ENSG00000169251rs1873038063161163687CPost bronchodilator FEV1/FVC ratio26634245unit increase0.432GO_0097366|EFO_0004713
ENSG00000169251rs67652703161182186?Morning vs. evening chronotype26835600EFO_0004354
ENSG00000169251rs1873038063161163687CPost bronchodilator FEV126634245NR unit increase2.295EFO_0004314|GO_0097366
ENSG00000169251rs1400142243161238986GPost bronchodilator FEV126634245NR unit increase2.355EFO_0004314|GO_0097366
ENSG00000169251rs1922944963161113786TPost bronchodilator FEV126634245NR unit increase2.389EFO_0004314|GO_0097366
ENSG00000169251rs64413643161180127TEducational attainment (MTAG)30038396[0.0053-0.0107] unit decrease0.008EFO_0004784
ENSG00000169251rs15993743161173939AChronotype306968231.0313823EFO_0008328
ENSG00000169251rs15993743161173939AMorning person306968231.0285EFO_0008328
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000169251's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000169251NMD310079.358ENSAPOG00000022912nmd39976.984Acanthochromis_polyacanthus
ENSG00000169251NMD310096.804ENSAMEG00000001584NMD39996.032Ailuropoda_melanoleuca
ENSG00000169251NMD310080.275ENSACIG00000015196nmd39973.016Amphilophus_citrinellus
ENSG00000169251NMD310079.358ENSAOCG00000009086nmd39977.381Amphiprion_ocellaris
ENSG00000169251NMD310079.358ENSAPEG00000000329nmd39977.183Amphiprion_percula
ENSG00000169251NMD310078.899ENSATEG00000014351nmd39977.579Anabas_testudineus
ENSG00000169251NMD39980.645ENSAPLG00000014786NMD39978.529Anas_platyrhynchos
ENSG00000169251NMD310083.499ENSACAG00000007349NMD39983.499Anolis_carolinensis
ENSG00000169251NMD310099.083ENSANAG00000026434NMD39997.590Aotus_nancymaae
ENSG00000169251NMD310079.817ENSACLG00000015520nmd39978.175Astatotilapia_calliptera
ENSG00000169251NMD310080.275ENSAMXG00000014415nmd39977.778Astyanax_mexicanus
ENSG00000169251NMD310094.831ENSBTAG00000016228NMD310094.831Bos_taurus
ENSG00000169251NMD39761.842WBGene00012030T25G3.39950.874Caenorhabditis_elegans
ENSG00000169251NMD310098.165ENSCJAG00000002900NMD39995.652Callithrix_jacchus
ENSG00000169251NMD39995.372ENSCAFG00000014352NMD39795.382Canis_familiaris
ENSG00000169251NMD310095.229ENSCAFG00020021145NMD39995.229Canis_lupus_dingo
ENSG00000169251NMD310094.235ENSCHIG00000016015NMD310094.235Capra_hircus
ENSG00000169251NMD310095.413ENSTSYG00000002155NMD39995.229Carlito_syrichta
ENSG00000169251NMD38398.343ENSCAPG00000017861NMD39395.500Cavia_aperea
ENSG00000169251NMD310096.330ENSCPOG00000005953NMD39495.881Cavia_porcellus
ENSG00000169251NMD310099.083ENSCCAG00000037460NMD310097.217Cebus_capucinus
ENSG00000169251NMD310099.083ENSCATG00000030022NMD310098.410Cercocebus_atys
ENSG00000169251NMD310094.495ENSCLAG00000003155NMD310094.433Chinchilla_lanigera
ENSG00000169251NMD310099.083ENSCSAG00000012333NMD310098.410Chlorocebus_sabaeus
ENSG00000169251NMD38095.423ENSCHOG00000001240NMD38095.423Choloepus_hoffmanni
ENSG00000169251NMD310084.294ENSCPBG00000018318NMD39985.470Chrysemys_picta_bellii
ENSG00000169251NMD39662.679ENSCING00000002129-9654.601Ciona_intestinalis
ENSG00000169251NMD38754.875ENSCSAVG00000001120-9754.875Ciona_savignyi
ENSG00000169251NMD310092.060ENSCANG00000042939NMD310092.060Colobus_angolensis_palliatus
ENSG00000169251NMD310083.945ENSCGRG00001001792Nmd310080.318Cricetulus_griseus_chok1gshd
ENSG00000169251NMD39795.706ENSCGRG00000007947Nmd39895.706Cricetulus_griseus_crigri
ENSG00000169251NMD310079.817ENSCSEG00000017954nmd39977.555Cynoglossus_semilaevis
ENSG00000169251NMD310079.358ENSCVAG00000004672nmd39970.238Cyprinodon_variegatus
ENSG00000169251NMD310079.358ENSDARG00000015676nmd39977.030Danio_rerio
ENSG00000169251NMD310096.330ENSDNOG00000045222NMD310094.632Dasypus_novemcinctus
ENSG00000169251NMD310095.413ENSDORG00000005716Nmd310090.789Dipodomys_ordii
ENSG00000169251NMD39365.025FBgn0023542Nmd39453.347Drosophila_melanogaster
ENSG00000169251NMD310095.484ENSETEG00000003168NMD39982.306Echinops_telfairi
ENSG00000169251NMD38959.688ENSEBUG00000014316nmd39759.688Eptatretus_burgeri
ENSG00000169251NMD310096.330ENSEASG00005018672NMD310096.223Equus_asinus_asinus
ENSG00000169251NMD310096.330ENSECAG00000000188NMD39796.781Equus_caballus
ENSG00000169251NMD38596.386ENSEEUG00000010642-10069.851Erinaceus_europaeus
ENSG00000169251NMD310076.606ENSELUG00000024123nmd39975.794Esox_lucius
ENSG00000169251NMD310096.330ENSFCAG00000022867NMD39996.223Felis_catus
ENSG00000169251NMD39483.087ENSFALG00000008711NMD39983.087Ficedula_albicollis
ENSG00000169251NMD310096.330ENSFDAG00000013724-10094.841Fukomys_damarensis
ENSG00000169251NMD310088.073ENSFDAG00000012197-10076.587Fukomys_damarensis
ENSG00000169251NMD310078.440ENSFHEG00000000415nmd39975.992Fundulus_heteroclitus
ENSG00000169251NMD39775.460ENSGMOG00000009675nmd39975.460Gadus_morhua
ENSG00000169251NMD39982.488ENSGALG00000009533NMD39981.124Gallus_gallus
ENSG00000169251NMD310077.523ENSGAFG00000012798nmd39576.048Gambusia_affinis
ENSG00000169251NMD310077.982ENSGACG00000010028nmd39976.389Gasterosteus_aculeatus
ENSG00000169251NMD310083.698ENSGAGG00000006556NMD39983.936Gopherus_agassizii
ENSG00000169251NMD3100100.000ENSGGOG00000007157NMD310099.602Gorilla_gorilla
ENSG00000169251NMD39979.084ENSGGOG00000028590-9979.084Gorilla_gorilla
ENSG00000169251NMD310079.817ENSHBUG00000001781nmd39978.175Haplochromis_burtoni
ENSG00000169251NMD310095.413ENSHGLG00000014451-10095.229Heterocephalus_glaber_female
ENSG00000169251NMD310086.452ENSHGLG00000010477-10075.746Heterocephalus_glaber_female
ENSG00000169251NMD310086.452ENSHGLG00100001042-10075.944Heterocephalus_glaber_male
ENSG00000169251NMD310095.413ENSHGLG00100006613-10095.229Heterocephalus_glaber_male
ENSG00000169251NMD310078.899ENSHCOG00000004292nmd39277.137Hippocampus_comes
ENSG00000169251NMD310081.651ENSIPUG00000005073nmd39978.571Ictalurus_punctatus
ENSG00000169251NMD310098.765ENSSTOG00000001899NMD310098.012Ictidomys_tridecemlineatus
ENSG00000169251NMD39795.492ENSJJAG00000019759Nmd39995.492Jaculus_jaculus
ENSG00000169251NMD310079.817ENSKMAG00000020427nmd39978.175Kryptolebias_marmoratus
ENSG00000169251NMD310079.358ENSLBEG00000022216nmd39976.482Labrus_bergylta
ENSG00000169251NMD310080.275ENSLACG00000005731NMD39978.261Latimeria_chalumnae
ENSG00000169251NMD310079.563ENSLOCG00000003561nmd39979.563Lepisosteus_oculatus
ENSG00000169251NMD310095.918ENSLAFG00000007231NMD310094.246Loxodonta_africana
ENSG00000169251NMD310099.083ENSMFAG00000040934NMD310098.410Macaca_fascicularis
ENSG00000169251NMD310099.083ENSMMUG00000009564NMD310097.353Macaca_mulatta
ENSG00000169251NMD310099.083ENSMNEG00000034626NMD310098.410Macaca_nemestrina
ENSG00000169251NMD38897.065ENSMLEG00000002741NMD310097.065Mandrillus_leucophaeus
ENSG00000169251NMD310078.899ENSMAMG00000012427nmd39977.381Mastacembelus_armatus
ENSG00000169251NMD310079.817ENSMZEG00005016888nmd39978.175Maylandia_zebra
ENSG00000169251NMD39981.567ENSMGAG00000010498NMD39980.522Meleagris_gallopavo
ENSG00000169251NMD310096.789ENSMAUG00000000633Nmd310095.626Mesocricetus_auratus
ENSG00000169251NMD310096.024ENSMICG00000049196NMD310096.024Microcebus_murinus
ENSG00000169251NMD39994.931ENSMOCG00000005180Nmd310094.223Microtus_ochrogaster
ENSG00000169251NMD310077.626ENSMMOG00000012765nmd39976.832Mola_mola
ENSG00000169251NMD39985.253ENSMODG00000016296NMD310066.089Monodelphis_domestica
ENSG00000169251NMD310078.899ENSMALG00000009256nmd39977.778Monopterus_albus
ENSG00000169251NMD310096.330MGP_CAROLIEiJ_G0025069Nmd310094.831Mus_caroli
ENSG00000169251NMD310095.872ENSMUSG00000027787Nmd310094.831Mus_musculus
ENSG00000169251NMD310095.872MGP_PahariEiJ_G0026512Nmd310094.632Mus_pahari
ENSG00000169251NMD310095.872MGP_SPRETEiJ_G0026011Nmd310095.030Mus_spretus
ENSG00000169251NMD310098.165ENSMPUG00000002955NMD39997.217Mustela_putorius_furo
ENSG00000169251NMD39791.650ENSMLUG00000000701NMD39791.650Myotis_lucifugus
ENSG00000169251NMD310097.706ENSNGAG00000012307Nmd39995.984Nannospalax_galili
ENSG00000169251NMD310080.275ENSNBRG00000003324nmd39977.976Neolamprologus_brichardi
ENSG00000169251NMD310099.541ENSNLEG00000004655NMD310099.205Nomascus_leucogenys
ENSG00000169251NMD310057.407ENSOPRG00000007690-8567.063Ochotona_princeps
ENSG00000169251NMD310095.872ENSODEG00000006270NMD310095.030Octodon_degus
ENSG00000169251NMD310080.275ENSONIG00000003643nmd39978.571Oreochromis_niloticus
ENSG00000169251NMD36491.262ENSOANG00000000870-9887.681Ornithorhynchus_anatinus
ENSG00000169251NMD310098.624ENSOCUG00000017454NMD310098.000Oryctolagus_cuniculus
ENSG00000169251NMD310078.440ENSORLG00000006279nmd39977.154Oryzias_latipes
ENSG00000169251NMD310078.440ENSORLG00020003843nmd39976.954Oryzias_latipes_hni
ENSG00000169251NMD310077.982ENSORLG00015006379nmd39976.506Oryzias_latipes_hsok
ENSG00000169251NMD310072.449ENSORLG00015002655-6873.950Oryzias_latipes_hsok
ENSG00000169251NMD310079.358ENSOMEG00000012144nmd39977.778Oryzias_melastigma
ENSG00000169251NMD310097.706ENSOGAG00000014910NMD310096.223Otolemur_garnettii
ENSG00000169251NMD39994.389ENSOARG00000001883NMD39794.389Ovis_aries
ENSG00000169251NMD3100100.000ENSPPAG00000043829NMD310099.602Pan_paniscus
ENSG00000169251NMD310096.330ENSPPRG00000000724NMD310094.912Panthera_pardus
ENSG00000169251NMD310095.872ENSPTIG00000016761NMD39995.626Panthera_tigris_altaica
ENSG00000169251NMD310099.602ENSPTRG00000015586NMD310099.602Pan_troglodytes
ENSG00000169251NMD310099.083ENSPANG00000006665NMD310097.164Papio_anubis
ENSG00000169251NMD310078.440ENSPKIG00000009928nmd39977.183Paramormyrops_kingsleyae
ENSG00000169251NMD310083.698ENSPSIG00000007591NMD39983.936Pelodiscus_sinensis
ENSG00000169251NMD310073.810ENSPMGG00000014015nmd39973.948Periophthalmus_magnuspinnatus
ENSG00000169251NMD310095.626ENSPEMG00000021880Nmd310095.626Peromyscus_maniculatus_bairdii
ENSG00000169251NMD310084.493ENSPCIG00000020869NMD310084.493Phascolarctos_cinereus
ENSG00000169251NMD310078.899ENSPFOG00000012103nmd39976.786Poecilia_formosa
ENSG00000169251NMD310079.358ENSPLAG00000008087nmd39976.984Poecilia_latipinna
ENSG00000169251NMD310078.899ENSPMEG00000008506nmd39976.786Poecilia_mexicana
ENSG00000169251NMD310079.358ENSPREG00000001848nmd39976.984Poecilia_reticulata
ENSG00000169251NMD310099.205ENSPPYG00000014263NMD310099.205Pongo_abelii
ENSG00000169251NMD310096.129ENSPCAG00000009851NMD310077.174Procavia_capensis
ENSG00000169251NMD38598.795ENSPCOG00000012855-8999.048Propithecus_coquereli
ENSG00000169251NMD310095.918ENSPVAG00000003301NMD38596.639Pteropus_vampyrus
ENSG00000169251NMD310079.817ENSPNYG00000006778nmd39977.976Pundamilia_nyererei
ENSG00000169251NMD310080.275ENSPNAG00000009442nmd39977.579Pygocentrus_nattereri
ENSG00000169251NMD310096.789ENSRNOG00000009310Nmd310094.632Rattus_norvegicus
ENSG00000169251NMD310094.235ENSRBIG00000040379NMD310094.235Rhinopithecus_bieti
ENSG00000169251NMD310099.541ENSRROG00000036181NMD310098.807Rhinopithecus_roxellana
ENSG00000169251NMD39551.675YHR170WNMD39544.071Saccharomyces_cerevisiae
ENSG00000169251NMD39996.781ENSSBOG00000024021NMD39996.781Saimiri_boliviensis_boliviensis
ENSG00000169251NMD310084.862ENSSHAG00000016044NMD310080.079Sarcophilus_harrisii
ENSG00000169251NMD310078.440ENSSFOG00015003609nmd39976.984Scleropages_formosus
ENSG00000169251NMD310077.523ENSSMAG00000012887nmd39975.794Scophthalmus_maximus
ENSG00000169251NMD310079.817ENSSDUG00000023721nmd39977.579Seriola_dumerili
ENSG00000169251NMD310079.358ENSSLDG00000006565nmd39977.579Seriola_lalandi_dorsalis
ENSG00000169251NMD39794.467ENSSARG00000010402NMD39994.467Sorex_araneus
ENSG00000169251NMD39982.966ENSSPUG00000018791NMD310082.966Sphenodon_punctatus
ENSG00000169251NMD310078.440ENSSPAG00000014328nmd39977.381Stegastes_partitus
ENSG00000169251NMD310096.129ENSSSCG00000022952NMD310095.030Sus_scrofa
ENSG00000169251NMD39180.911ENSTGUG00000015141-10080.911Taeniopygia_guttata
ENSG00000169251NMD310081.511ENSTGUG00000011140-10081.511Taeniopygia_guttata
ENSG00000169251NMD310077.778ENSTRUG00000005958nmd39976.389Takifugu_rubripes
ENSG00000169251NMD310095.679ENSTBEG00000011783-10069.384Tupaia_belangeri
ENSG00000169251NMD310089.264ENSTTRG00000012938NMD310089.264Tursiops_truncatus
ENSG00000169251NMD310096.789ENSUAMG00000009305-9996.517Ursus_americanus
ENSG00000169251NMD310096.789ENSUMAG00000011070NMD39995.976Ursus_maritimus
ENSG00000169251NMD39995.853ENSVPAG00000008779NMD310094.632Vicugna_pacos
ENSG00000169251NMD310095.626ENSVVUG00000023055NMD39995.976Vulpes_vulpes
ENSG00000169251NMD310083.945ENSXETG00000027727nmd39983.101Xenopus_tropicalis
ENSG00000169251NMD38973.563ENSXCOG00000012490nmd38771.495Xiphophorus_couchianus
ENSG00000169251NMD310078.899ENSXMAG00000018406nmd39976.786Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000055ribosomal large subunit export from nucleus21873635.IBAProcess
GO:0000055ribosomal large subunit export from nucleus12773398.IMPProcess
GO:0003723RNA binding22658674.HDAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-IDAComponent
GO:0005654nucleoplasm12773398.23782956.IDAComponent
GO:0005730nucleolus12773398.23782956.IDAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm12724356.12773398.23782956.IDAComponent
GO:0016020membrane19946888.HDAComponent
GO:0030674protein binding, bridging12773398.IDAFunction
GO:0032092positive regulation of protein binding12724356.IMPProcess
GO:0043023ribosomal large subunit binding21873635.IBAFunction
GO:0043023ribosomal large subunit binding12773398.IDAFunction
GO:0043023ribosomal large subunit binding12724356.IPIFunction
GO:1902680positive regulation of RNA biosynthetic process23782956.IMPProcess
GO:1904751positive regulation of protein localization to nucleolus23782956.IMPProcess

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