EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000169800 (Gene tree)
Gene ID: 159163
Gene Symbol: RBMY1F
Alias: MGC33094
Full Name: RNA binding motif protein, Y-linked, family 1, member F
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 14,828 bases
Position: chrY:22,168,181-22,183,008
Accession: 23974
RBP type: canonical RBP
Summary: This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. Multiple copies of this gene are found in the AZFb azoospermia factor region of chromosome Y and the encoded protein is thought to be involved in spermatogenesis. Most copies of this locus are pseudogenes, although six highly similar copies have full-length ORFs and are considered functional. Four functional copies of this gene are found within inverted repeat IR2; two functional copies of this gene are found in palindrome P3, along with two copies of PTPN13-like, Y-linked. [provided by RefSeq, Jul 2008]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000406005	RBM1CTR	PF08081.11	7.6e-22	1	1
ENSP00000307155	RBM1CTR	PF08081.11	8.4e-22	1	1
ENSP00000406005	RRM_1	PF00076.22	1.6e-20	1	1
ENSP00000307155	RRM_1	PF00076.22	1.7e-20	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000454978	RBMY1F-202	1810	XM_017030033	ENSP00000406005	459 (aa)	XP_016885522	J3KQ82
ENST00000481858	RBMY1F-203	1718	-	-	- (aa)	-	-
ENST00000303766	RBMY1F-201	1887	XM_017030032	ENSP00000307155	496 (aa)	XP_016885521	Q15415

Gene Model

Click here to download ENSG00000169800's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000169800's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000169800	RBMY1F	100	99.194	ENSG00000242875	RBMY1B	100	99.194
ENSG00000169800	RBMY1F	100	98.790	ENSG00000242389	RBMY1E	100	98.790
ENSG00000169800	RBMY1F	78	59.804	ENSG00000213516	RBMXL1	100	68.750
ENSG00000169800	RBMY1F	91	45.608	ENSG00000170748	RBMXL2	93	53.462
ENSG00000169800	RBMY1F	100	100.000	ENSG00000226941	RBMY1J	100	100.000
ENSG00000169800	RBMY1F	90	56.122	ENSG00000147274	RBMX	97	80.556
ENSG00000169800	RBMY1F	100	98.992	ENSG00000244395	RBMY1D	100	98.992
ENSG00000169800	RBMY1F	100	99.194	ENSG00000234414	RBMY1A1	100	99.194

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000169800	RBMY1F	100	67.081	ENSCSAG00000018304	-	100	67.671	Chlorocebus_sabaeus
ENSG00000169800	RBMY1F	99	53.416	ENSCSAG00000018310	-	100	55.668	Chlorocebus_sabaeus
ENSG00000169800	RBMY1F	85	44.170	ENSMUSG00000095852	Gm10256	87	44.170	Mus_musculus
ENSG00000169800	RBMY1F	85	44.876	ENSMUSG00000096520	Gm3376	87	44.876	Mus_musculus
ENSG00000169800	RBMY1F	85	44.170	ENSMUSG00000091987	Gm10352	87	44.170	Mus_musculus
ENSG00000169800	RBMY1F	85	43.816	ENSMUSG00000093987	Gm21704	87	43.816	Mus_musculus
ENSG00000169800	RBMY1F	85	43.816	ENSMUSG00000095948	Gm21708	87	43.816	Mus_musculus
ENSG00000169800	RBMY1F	85	43.816	ENSMUSG00000094511	Gm21693	87	43.816	Mus_musculus
ENSG00000169800	RBMY1F	85	43.816	ENSMUSG00000094658	Rbmy	87	43.816	Mus_musculus
ENSG00000169800	RBMY1F	85	43.816	ENSMUSG00000102053	Gm4064	87	43.816	Mus_musculus
ENSG00000169800	RBMY1F	85	43.816	ENSMUSG00000093918	Gm21677	87	43.816	Mus_musculus
ENSG00000169800	RBMY1F	100	92.174	ENSPTRG00000042791	-	100	92.174	Pan_troglodytes
ENSG00000169800	RBMY1F	100	91.304	ENSPTRG00000051395	-	100	91.304	Pan_troglodytes
ENSG00000169800	RBMY1F	100	93.737	ENSPTRG00000047385	-	100	93.737	Pan_troglodytes
ENSG00000169800	RBMY1F	100	86.400	ENSPTRG00000046270	-	100	89.849	Pan_troglodytes
ENSG00000169800	RBMY1F	100	89.784	ENSPTRG00000045105	-	100	89.784	Pan_troglodytes
ENSG00000169800	RBMY1F	100	94.783	ENSPTRG00000046311	-	100	94.783	Pan_troglodytes
ENSG00000169800	RBMY1F	100	86.837	ENSPTRG00000050914	-	100	86.837	Pan_troglodytes
ENSG00000169800	RBMY1F	100	89.587	ENSPTRG00000047951	-	100	89.587	Pan_troglodytes
ENSG00000169800	RBMY1F	100	89.587	ENSPTRG00000043157	-	100	89.587	Pan_troglodytes
ENSG00000169800	RBMY1F	100	76.582	ENSPTRG00000049088	-	100	76.582	Pan_troglodytes
ENSG00000169800	RBMY1F	100	93.964	ENSPTRG00000051022	-	100	93.964	Pan_troglodytes
ENSG00000169800	RBMY1F	76	53.521	ENSRNOG00000060963	Rbmy1j	81	48.000	Rattus_norvegicus
ENSG00000169800	RBMY1F	97	64.045	ENSRBIG00000029066	-	100	64.045	Rhinopithecus_bieti
ENSG00000169800	RBMY1F	99	72.113	ENSRBIG00000007617	-	99	72.549	Rhinopithecus_bieti
ENSG00000169800	RBMY1F	99	72.549	ENSRROG00000029740	-	99	73.203	Rhinopithecus_roxellana

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	8269511.	NAS	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005515	protein binding	21516116.25416956.25910212.26871637.	IPI	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0007283	spermatogenesis	8269511.	NAS	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0042802	identical protein binding	25416956.	IPI	Function
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process