EuRBPDB

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  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000170748 (Gene tree)
Gene ID
27288
Gene Symbol
RBMXL2
Alias
HNRNPG-T|HNRPGT
Full Name
RBMX like 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
2,215 bases
Position
chr11:7,088,934-7,091,148
Accession
17886
RBP type
canonical RBP
Summary
This gene belongs to the HNRPG subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has two RRM domains that bind RNAs. This gene is intronless and is thought to be derived from a processed retroposon. However, unlike many retroposon-derived genes, this gene is not a pseudogene. The encoded protein has similarity to HNRPG and RBMY proteins and it is suggested to replace HNRPG protein function during meiotic prophase or act as a germ cell-specific splicing regulator. It primarily localizes to the nuclei of meiotic spermatocytes. This gene is a candidate for autosomal male infertility. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000304139RBM1CTRPF08081.115.9e-1811
ENSP00000304139RRM_1PF00076.221.6e-2111

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
30727917Interactome Analysis Of The Differentially Expressed Proteins In Uterine Leiomyoma.Anticancer Agents Med Chem2019 Feb 6Sahar Tdoi: 10.2174/1871520619666190206143523
19893608The germ cell nuclear proteins hnRNP G-T and RBMY activate a testis-specific exon.PLoS Genet2009 NovLiu Ydoi: 10.1371/journal.pgen.1000707
18562473Haploinsufficiency of the germ cell-specific nuclear RNA binding protein hnRNP G-T prevents functional spermatogenesis in the mouse.Hum Mol Genet2008 Sep 15Ehrmann Idoi: 10.1093/hmg/ddn179
30674417An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning.Elife2019 Jan 24Ehrmann Idoi: 10.7554/eLife.39304.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000306904RBMXL2-2011874-ENSP00000304139392 (aa)-O75526
Gene Model
Click here to download ENSG00000170748's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000170748Platelet Count9.0540000E-005-
ENSG00000170748Platelet Function Tests1.5418500E-005-
ENSG00000170748Arachidonic Acid9E-626584805
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000170748's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000170748RBMXL29472.581ENSG00000147274RBMX9791.667
ENSG00000170748RBMXL29353.435ENSG00000242875RBMY1B9075.676
ENSG00000170748RBMXL28453.435ENSG00000242389RBMY1E9075.676
ENSG00000170748RBMXL27871.753ENSG00000213516RBMXL19574.000
ENSG00000170748RBMXL29353.462ENSG00000226941RBMY1J9145.608
ENSG00000170748RBMXL29353.462ENSG00000169800RBMY1F9145.608
ENSG00000170748RBMXL28453.435ENSG00000234414RBMY1A19075.676
ENSG00000170748RBMXL28453.435ENSG00000244395RBMY1D9075.676
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000170748RBMXL29776.104ENSBTAG00000047652RBMXL29578.892Bos_taurus
ENSG00000170748RBMXL29584.309ENSCJAG00000048010-9587.766Callithrix_jacchus
ENSG00000170748RBMXL210074.813ENSCAFG00020009888-9575.654Canis_lupus_dingo
ENSG00000170748RBMXL29775.584ENSCHIG00000005262-9578.364Capra_hircus
ENSG00000170748RBMXL29585.638ENSCCAG00000030849-9888.430Cebus_capucinus
ENSG00000170748RBMXL28077.236ENSCLAG00000016880-8988.889Chinchilla_lanigera
ENSG00000170748RBMXL210085.533ENSCSAG00000008478-9587.200Chlorocebus_sabaeus
ENSG00000170748RBMXL29493.531ENSCSAG00000019334RBMXL29594.385Chlorocebus_sabaeus
ENSG00000170748RBMXL29560.224ENSCANG00000038625-6873.611Colobus_angolensis_palliatus
ENSG00000170748RBMXL210078.535ENSCGRG00001007681Rbmxl29578.191Cricetulus_griseus_chok1gshd
ENSG00000170748RBMXL210069.095ENSETEG00000005619-9567.282Echinops_telfairi
ENSG00000170748RBMXL210076.515ENSFCAG00000042269-9578.249Felis_catus
ENSG00000170748RBMXL210098.214ENSGGOG00000006168RBMXL210098.214Gorilla_gorilla
ENSG00000170748RBMXL29572.679ENSLAFG00000014037-9569.149Loxodonta_africana
ENSG00000170748RBMXL29573.239ENSMFAG00000017591-6573.611Macaca_fascicularis
ENSG00000170748RBMXL29494.865ENSMFAG00000037874RBMXL29594.906Macaca_fascicularis
ENSG00000170748RBMXL210095.685ENSMMUG00000008588RBMXL210095.685Macaca_mulatta
ENSG00000170748RBMXL29573.611ENSMNEG00000026102-5873.611Macaca_nemestrina
ENSG00000170748RBMXL29493.548ENSMNEG00000004729RBMXL29594.400Macaca_nemestrina
ENSG00000170748RBMXL210063.452ENSMAUG00000021353Rbmxl29394.000Mesocricetus_auratus
ENSG00000170748RBMXL210079.545MGP_CAROLIEiJ_G0030264Rbmxl29577.660Mus_caroli
ENSG00000170748RBMXL210077.778ENSMUSG00000073894Rbmxl29577.394Mus_musculus
ENSG00000170748RBMXL210077.525MGP_PahariEiJ_G0013481Rbmxl29577.128Mus_pahari
ENSG00000170748RBMXL210077.778MGP_SPRETEiJ_G0031377Rbmxl29577.394Mus_spretus
ENSG00000170748RBMXL27990.805ENSMPUG00000010430-9190.805Mustela_putorius_furo
ENSG00000170748RBMXL29475.362ENSNLEG00000028889-5276.389Nomascus_leucogenys
ENSG00000170748RBMXL210096.438ENSNLEG00000018176RBMXL210096.438Nomascus_leucogenys
ENSG00000170748RBMXL29382.432ENSOGAG00000024361-9584.085Otolemur_garnettii
ENSG00000170748RBMXL210075.824ENSPPAG00000030663-5676.389Pan_paniscus
ENSG00000170748RBMXL210076.515ENSPPRG00000021361-9578.515Panthera_pardus
ENSG00000170748RBMXL210098.724ENSPTRG00000003312RBMXL210098.724Pan_troglodytes
ENSG00000170748RBMXL29493.548ENSPANG00000016324RBMXL29594.400Papio_anubis
ENSG00000170748RBMXL210073.626ENSPANG00000017967-6472.222Papio_anubis
ENSG00000170748RBMXL29586.327ENSRBIG00000027863RBMXL29582.667Rhinopithecus_bieti
ENSG00000170748RBMXL28560.822ENSRROG00000035554-6573.611Rhinopithecus_roxellana
ENSG00000170748RBMXL25980.000ENSSARG00000012142-5680.000Sorex_araneus
ENSG00000170748RBMXL29360.763ENSSSCG00000035683-9660.106Sus_scrofa
ENSG00000170748RBMXL28385.000ENSTTRG00000003238-7291.304Tursiops_truncatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0003729mRNA binding21873635.IBAFunction
GO:0005634nucleus-IEAComponent

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