EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000171490 (Gene tree)
Gene ID
26156
Gene Symbol
RSL1D1
Alias
PBK1|L12|DKFZP564M182|CSIG|UTP30
Full Name
ribosomal L1 domain containing 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
17,736 bases
Position
chr16:11,833,850-11,851,585
Accession
24534
RBP type
canonical RBP
Summary
(Ribosomal L1 Domain Containing 1) is a Protein Coding gene. Among its related pathways are Senescence and Autophagy in Cancer. Gene Ontology (GO) annotations related to this gene include RNA binding. An important paralog of this gene is RPL7A.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000460871Ribosomal_L1PF00687.213.8e-5111
ENSP00000347897Ribosomal_L1PF00687.212e-4811
ENSP00000460748Ribosomal_L1PF00687.214e-3612
ENSP00000460748Ribosomal_L1PF00687.214e-3622
ENSP00000460343Ribosomal_L1PF00687.211.1e-2911
ENSP00000459331Ribosomal_L1PF00687.212.5e-1811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
28951391Structure and RNA recognition of ribosome assembly factor Utp30.RNA2017 DecHu Jdoi: 10.1261/rna.062695.117
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000573251RSL1D1-208894-ENSP00000460748296 (aa)-I3L3U9
ENST00000574823RSL1D1-212576--- (aa)--
ENST00000573618RSL1D1-209710-ENSP0000045920747 (aa)-I3L1Y4
ENST00000571133RSL1D1-2045483-ENSP00000460871490 (aa)-O76021
ENST00000571988RSL1D1-205509-ENSP00000460343158 (aa)-I3L3C4
ENST00000570767RSL1D1-203871-ENSP0000045962243 (aa)-I3L2F2
ENST00000396503RSL1D1-2021470-ENSP0000037976039 (aa)-J3KPU7
ENST00000573029RSL1D1-207766-ENSP0000046151346 (aa)-I3L4T8
ENST00000572090RSL1D1-206759-ENSP0000045868493 (aa)-I3L1A3
ENST00000573791RSL1D1-210520-ENSP0000045933198 (aa)-I3L234
ENST00000574287RSL1D1-211485--- (aa)--
ENST00000355674RSL1D1-2011323-ENSP00000347897430 (aa)-J3QSV6
Gene Model
Click here to download ENSG00000171490's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000171490rs20181991611847111?Adolescent idiopathic scoliosis30019117EFO_0005423
ENSG00000171490rs80454211611836153THeel bone mineral density30598549[0.01-0.019] unit decrease0.0143757EFO_0009270
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000171490's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000171490RSL1D110055.102ENSAPOG00000004544rsl1d19839.853Acanthochromis_polyacanthus
ENSG00000171490RSL1D110086.735ENSAMEG00000009570RSL1D19767.083Ailuropoda_melanoleuca
ENSG00000171490RSL1D110051.020ENSACIG00000006608rsl1d18836.657Amphilophus_citrinellus
ENSG00000171490RSL1D110054.082ENSAOCG00000001548rsl1d19839.803Amphiprion_ocellaris
ENSG00000171490RSL1D110054.082ENSAPEG00000003334rsl1d19839.803Amphiprion_percula
ENSG00000171490RSL1D110054.082ENSATEG00000009247rsl1d19039.410Anabas_testudineus
ENSG00000171490RSL1D110060.204ENSAPLG00000004451RSL1D19642.411Anas_platyrhynchos
ENSG00000171490RSL1D110089.241ENSANAG00000028185-10081.429Aotus_nancymaae
ENSG00000171490RSL1D110090.506ENSANAG00000034590-10088.844Aotus_nancymaae
ENSG00000171490RSL1D110086.709ENSANAG00000026520-10082.114Aotus_nancymaae
ENSG00000171490RSL1D110057.143ENSACLG00000017535rsl1d19239.037Astatotilapia_calliptera
ENSG00000171490RSL1D110050.505ENSAMXG00000008624rsl1d19736.675Astyanax_mexicanus
ENSG00000171490RSL1D110079.592ENSBTAG00000014588RSL1D19765.063Bos_taurus
ENSG00000171490RSL1D110090.816ENSCJAG00000042606-9689.009Callithrix_jacchus
ENSG00000171490RSL1D110090.816ENSCJAG00000008375-9689.009Callithrix_jacchus
ENSG00000171490RSL1D110084.694ENSCAFG00000018865RSL1D19866.458Canis_familiaris
ENSG00000171490RSL1D110084.694ENSCAFG00020024488-9867.017Canis_lupus_dingo
ENSG00000171490RSL1D110056.329ENSCAFG00020002457-9253.795Canis_lupus_dingo
ENSG00000171490RSL1D110081.633ENSCHIG00000018658-9564.957Capra_hircus
ENSG00000171490RSL1D110080.612ENSCHIG00000009867-9760.714Capra_hircus
ENSG00000171490RSL1D110086.735ENSTSYG00000009276RSL1D19768.908Carlito_syrichta
ENSG00000171490RSL1D19978.344ENSCPOG00000010630RSL1D19464.425Cavia_porcellus
ENSG00000171490RSL1D110081.013ENSCCAG00000025197-6186.833Cebus_capucinus
ENSG00000171490RSL1D110091.772ENSCCAG00000017391-10087.830Cebus_capucinus
ENSG00000171490RSL1D110087.342ENSCCAG00000031641-9580.042Cebus_capucinus
ENSG00000171490RSL1D110098.980ENSCATG00000031153RSL1D19092.564Cercocebus_atys
ENSG00000171490RSL1D19980.892ENSCLAG00000010975RSL1D19764.780Chinchilla_lanigera
ENSG00000171490RSL1D1100100.000ENSCSAG00000008255RSL1D19791.387Chlorocebus_sabaeus
ENSG00000171490RSL1D110082.653ENSCHOG00000010827RSL1D17474.627Choloepus_hoffmanni
ENSG00000171490RSL1D110058.163ENSCPBG00000004564RSL1D19453.081Chrysemys_picta_bellii
ENSG00000171490RSL1D110044.000ENSCING00000011810-10036.681Ciona_intestinalis
ENSG00000171490RSL1D19737.821ENSCSAVG00000011797-7233.735Ciona_savignyi
ENSG00000171490RSL1D110097.959ENSCANG00000029202RSL1D19891.087Colobus_angolensis_palliatus
ENSG00000171490RSL1D19969.072ENSCGRG00001014989Rsl1d19454.077Cricetulus_griseus_chok1gshd
ENSG00000171490RSL1D19969.072ENSCGRG00000001905Rsl1d19454.077Cricetulus_griseus_crigri
ENSG00000171490RSL1D110052.041ENSCSEG00000019693rsl1d16546.473Cynoglossus_semilaevis
ENSG00000171490RSL1D110058.163ENSCVAG00000000672rsl1d16850.622Cyprinodon_variegatus
ENSG00000171490RSL1D19854.167ENSDARG00000055868rsl1d16843.874Danio_rerio
ENSG00000171490RSL1D16952.507ENSDNOG00000047567-9155.449Dasypus_novemcinctus
ENSG00000171490RSL1D110081.633ENSDNOG00000004601-9562.900Dasypus_novemcinctus
ENSG00000171490RSL1D110081.633ENSDNOG00000040779-9562.473Dasypus_novemcinctus
ENSG00000171490RSL1D110074.490ENSDORG00000013432-8469.159Dipodomys_ordii
ENSG00000171490RSL1D110048.980ENSEBUG00000005400-5745.188Eptatretus_burgeri
ENSG00000171490RSL1D110085.714ENSEASG00005011499RSL1D19470.450Equus_asinus_asinus
ENSG00000171490RSL1D110084.694ENSECAG00000025036RSL1D19469.379Equus_caballus
ENSG00000171490RSL1D17377.419ENSEEUG00000015569-7977.419Erinaceus_europaeus
ENSG00000171490RSL1D110054.082ENSELUG00000019243rsl1d19739.332Esox_lucius
ENSG00000171490RSL1D110085.714ENSFCAG00000010114RSL1D19867.917Felis_catus
ENSG00000171490RSL1D110057.143ENSFALG00000003869RSL1D19041.290Ficedula_albicollis
ENSG00000171490RSL1D110076.582ENSFDAG00000011414RSL1D19461.220Fukomys_damarensis
ENSG00000171490RSL1D110054.082ENSFHEG00000017235rsl1d19238.046Fundulus_heteroclitus
ENSG00000171490RSL1D110053.061ENSGMOG00000013048rsl1d18947.809Gadus_morhua
ENSG00000171490RSL1D110057.143ENSGALG00000033690RSL1D19340.807Gallus_gallus
ENSG00000171490RSL1D110056.122ENSGAFG00000020794rsl1d18239.385Gambusia_affinis
ENSG00000171490RSL1D19949.045ENSGACG00000004483rsl1d17045.267Gasterosteus_aculeatus
ENSG00000171490RSL1D110099.072ENSGGOG00000013463RSL1D110098.776Gorilla_gorilla
ENSG00000171490RSL1D110056.122ENSHBUG00000001551rsl1d19140.107Haplochromis_burtoni
ENSG00000171490RSL1D110073.469ENSHGLG00000006774RSL1D19461.220Heterocephalus_glaber_female
ENSG00000171490RSL1D110073.469ENSHGLG00100017781RSL1D19461.220Heterocephalus_glaber_male
ENSG00000171490RSL1D19949.485ENSHCOG00000015208rsl1d16743.882Hippocampus_comes
ENSG00000171490RSL1D19951.592ENSIPUG00000001677rsl1d16646.988Ictalurus_punctatus
ENSG00000171490RSL1D110075.510ENSSTOG00000015400RSL1D19963.953Ictidomys_tridecemlineatus
ENSG00000171490RSL1D110072.449ENSJJAG00000012115Rsl1d19656.858Jaculus_jaculus
ENSG00000171490RSL1D110052.041ENSKMAG00000021908rsl1d19639.447Kryptolebias_marmoratus
ENSG00000171490RSL1D110050.000ENSLBEG00000001076rsl1d19835.872Labrus_bergylta
ENSG00000171490RSL1D110055.102ENSLOCG00000007416rsl1d15847.107Lepisosteus_oculatus
ENSG00000171490RSL1D110082.653ENSLAFG00000013664RSL1D19361.783Loxodonta_africana
ENSG00000171490RSL1D110098.980ENSMFAG00000037288RSL1D19791.807Macaca_fascicularis
ENSG00000171490RSL1D110098.980ENSMMUG00000019632RSL1D110097.468Macaca_mulatta
ENSG00000171490RSL1D1100100.000ENSMNEG00000044196RSL1D19792.017Macaca_nemestrina
ENSG00000171490RSL1D110097.959ENSMLEG00000042058RSL1D19791.387Mandrillus_leucophaeus
ENSG00000171490RSL1D110056.122ENSMAMG00000004385rsl1d19839.024Mastacembelus_armatus
ENSG00000171490RSL1D110057.143ENSMZEG00005007150rsl1d19239.305Maylandia_zebra
ENSG00000171490RSL1D110057.595ENSMGAG00000000863RSL1D19141.535Meleagris_gallopavo
ENSG00000171490RSL1D110079.592ENSMICG00000008229RSL1D19768.201Microcebus_murinus
ENSG00000171490RSL1D110070.886ENSMOCG00000017724Rsl1d19356.132Microtus_ochrogaster
ENSG00000171490RSL1D110054.082ENSMMOG00000003730rsl1d17946.414Mola_mola
ENSG00000171490RSL1D110062.245ENSMODG00000004625-9346.032Monodelphis_domestica
ENSG00000171490RSL1D110054.082ENSMODG00000029494-5651.029Monodelphis_domestica
ENSG00000171490RSL1D110055.102ENSMALG00000009531rsl1d19039.323Monopterus_albus
ENSG00000171490RSL1D19971.134ENSMUSG00000005846Rsl1d19455.940Mus_musculus
ENSG00000171490RSL1D19970.103MGP_PahariEiJ_G0016164Rsl1d19455.315Mus_pahari
ENSG00000171490RSL1D110070.253MGP_SPRETEiJ_G0021352Rsl1d19456.371Mus_spretus
ENSG00000171490RSL1D110086.735ENSMPUG00000014548RSL1D19868.724Mustela_putorius_furo
ENSG00000171490RSL1D110084.694ENSMLUG00000000784RSL1D19365.376Myotis_lucifugus
ENSG00000171490RSL1D110072.449ENSNGAG00000009086-9560.217Nannospalax_galili
ENSG00000171490RSL1D110071.429ENSNGAG00000013578-9961.488Nannospalax_galili
ENSG00000171490RSL1D110057.143ENSNBRG00000002777rsl1d19138.378Neolamprologus_brichardi
ENSG00000171490RSL1D110096.939ENSNLEG00000012149-9797.283Nomascus_leucogenys
ENSG00000171490RSL1D110097.959ENSNLEG00000010196-10096.122Nomascus_leucogenys
ENSG00000171490RSL1D110076.531ENSOPRG00000004442-9762.134Ochotona_princeps
ENSG00000171490RSL1D110056.122ENSONIG00000019757rsl1d19439.892Oreochromis_niloticus
ENSG00000171490RSL1D110055.102ENSOANG00000009408-9940.000Ornithorhynchus_anatinus
ENSG00000171490RSL1D110078.571ENSOCUG00000004751RSL1D19766.876Oryctolagus_cuniculus
ENSG00000171490RSL1D19756.842ENSORLG00000002877rsl1d16844.915Oryzias_latipes
ENSG00000171490RSL1D19756.842ENSORLG00020006636rsl1d16844.915Oryzias_latipes_hni
ENSG00000171490RSL1D19756.842ENSORLG00015005427rsl1d16844.915Oryzias_latipes_hsok
ENSG00000171490RSL1D19757.895ENSOMEG00000008036rsl1d16545.763Oryzias_melastigma
ENSG00000171490RSL1D110086.735ENSOGAG00000015151RSL1D19871.608Otolemur_garnettii
ENSG00000171490RSL1D110081.633ENSOARG00000006923RSL1D19865.833Ovis_aries
ENSG00000171490RSL1D1100100.000ENSPPAG00000039716RSL1D110099.592Pan_paniscus
ENSG00000171490RSL1D110086.735ENSPPRG00000005220RSL1D19867.917Panthera_pardus
ENSG00000171490RSL1D110086.735ENSPTIG00000005526RSL1D19469.956Panthera_tigris_altaica
ENSG00000171490RSL1D110099.388ENSPTRG00000007777RSL1D110099.388Pan_troglodytes
ENSG00000171490RSL1D110098.980ENSPANG00000023073RSL1D19791.597Papio_anubis
ENSG00000171490RSL1D19949.682ENSPKIG00000022687rsl1d16445.643Paramormyrops_kingsleyae
ENSG00000171490RSL1D110056.962ENSPSIG00000011642RSL1D19740.512Pelodiscus_sinensis
ENSG00000171490RSL1D110056.122ENSPMGG00000022261rsl1d18547.131Periophthalmus_magnuspinnatus
ENSG00000171490RSL1D110070.886ENSPEMG00000009523Rsl1d19455.556Peromyscus_maniculatus_bairdii
ENSG00000171490RSL1D110058.163ENSPMAG00000005446rsl1d18738.213Petromyzon_marinus
ENSG00000171490RSL1D19959.873ENSPCIG00000026851-8747.044Phascolarctos_cinereus
ENSG00000171490RSL1D110058.163ENSPFOG00000005017rsl1d19642.936Poecilia_formosa
ENSG00000171490RSL1D110058.163ENSPLAG00000000482rsl1d17439.607Poecilia_latipinna
ENSG00000171490RSL1D110057.143ENSPMEG00000007032rsl1d18340.223Poecilia_mexicana
ENSG00000171490RSL1D19760.000ENSPREG00000016619rsl1d17440.176Poecilia_reticulata
ENSG00000171490RSL1D110098.980ENSPPYG00000007112RSL1D110096.531Pongo_abelii
ENSG00000171490RSL1D110083.673ENSPPYG00000019335-9468.467Pongo_abelii
ENSG00000171490RSL1D18265.152ENSPCAG00000011264-7571.560Procavia_capensis
ENSG00000171490RSL1D110085.714ENSPCOG00000022456RSL1D110066.406Propithecus_coquereli
ENSG00000171490RSL1D110086.735ENSPVAG00000005014RSL1D19866.597Pteropus_vampyrus
ENSG00000171490RSL1D110057.143ENSPNYG00000002850rsl1d19140.160Pundamilia_nyererei
ENSG00000171490RSL1D110050.505ENSPNAG00000011848rsl1d18937.968Pygocentrus_nattereri
ENSG00000171490RSL1D19970.064ENSRNOG00000048608Rsl1d1l19355.675Rattus_norvegicus
ENSG00000171490RSL1D19465.217ENSRNOG00000032439Rsl1d15465.482Rattus_norvegicus
ENSG00000171490RSL1D19970.064ENSRNOG00000061236LOC1083482989355.675Rattus_norvegicus
ENSG00000171490RSL1D110097.959ENSRBIG00000030317RSL1D19791.176Rhinopithecus_bieti
ENSG00000171490RSL1D110097.959ENSRROG00000033658RSL1D19790.966Rhinopithecus_roxellana
ENSG00000171490RSL1D110092.405ENSSBOG00000035910-10089.452Saimiri_boliviensis_boliviensis
ENSG00000171490RSL1D19286.111ENSSBOG00000029329-10069.777Saimiri_boliviensis_boliviensis
ENSG00000171490RSL1D110083.603ENSSBOG00000028384-9984.583Saimiri_boliviensis_boliviensis
ENSG00000171490RSL1D19954.140ENSSFOG00015011354rsl1d16950.207Scleropages_formosus
ENSG00000171490RSL1D110053.061ENSSMAG00000007957rsl1d19036.412Scophthalmus_maximus
ENSG00000171490RSL1D110053.061ENSSDUG00000008447rsl1d17639.181Seriola_dumerili
ENSG00000171490RSL1D110055.102ENSSLDG00000008293rsl1d19838.177Seriola_lalandi_dorsalis
ENSG00000171490RSL1D110060.204ENSSPUG00000007525RSL1D19241.163Sphenodon_punctatus
ENSG00000171490RSL1D110056.122ENSSPAG00000009755rsl1d19839.512Stegastes_partitus
ENSG00000171490RSL1D110081.633ENSSSCG00000023984RSL1D19562.815Sus_scrofa
ENSG00000171490RSL1D110058.163ENSTGUG00000005174RSL1D110053.659Taeniopygia_guttata
ENSG00000171490RSL1D110052.041ENSTRUG00000016970rsl1d17247.266Takifugu_rubripes
ENSG00000171490RSL1D110050.000ENSTNIG00000012925rsl1d19835.784Tetraodon_nigroviridis
ENSG00000171490RSL1D18382.716ENSTBEG00000014678RSL1D19659.801Tupaia_belangeri
ENSG00000171490RSL1D110083.673ENSTTRG00000011629RSL1D19364.254Tursiops_truncatus
ENSG00000171490RSL1D110084.694ENSUAMG00000004470RSL1D19866.667Ursus_americanus
ENSG00000171490RSL1D110064.341ENSUMAG00000003994RSL1D110062.527Ursus_maritimus
ENSG00000171490RSL1D110084.694ENSVVUG00000018170-9867.292Vulpes_vulpes
ENSG00000171490RSL1D110068.354ENSVVUG00000024962-9557.983Vulpes_vulpes
ENSG00000171490RSL1D110063.265ENSXETG00000033365-9442.609Xenopus_tropicalis
ENSG00000171490RSL1D110059.184ENSXCOG00000003117rsl1d16355.102Xiphophorus_couchianus
ENSG00000171490RSL1D110059.184ENSXMAG00000025111rsl1d17345.669Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000470maturation of LSU-rRNA21873635.IBAProcess
GO:0001649osteoblast differentiation16210410.HDAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003730mRNA 3'-UTR binding16213212.IDAFunction
GO:0005730nucleolus18678645.IDAComponent
GO:0016020membrane16210410.HDAComponent
GO:003068690S preribosome21873635.IBAComponent
GO:0032880regulation of protein localization17158916.IMPProcess
GO:0042981regulation of apoptotic process18678645.IDAProcess
GO:0045296cadherin binding25468996.HDAFunction
GO:0048027mRNA 5'-UTR binding16213212.IDAFunction
GO:2000772regulation of cellular senescence18678645.IDAProcess

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