EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000171865 (Gene tree)
Gene ID
246243
Gene Symbol
RNASEH1
Alias
N
Full Name
ribonuclease H1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
26,804 bases
Position
chr2:3,531,813-3,558,616
Accession
18466
RBP type
canonical RBP
Summary
This gene encodes an endonuclease that specifically degrades the RNA of RNA-DNA hybrids and plays a key role in DNA replication and repair. Alternate in-frame start codon initiation results in the production of alternate isoforms that are directed to the mitochondria or to the nucleus. The production of the mitochondrial isoform is modulated by an upstream open reading frame (uORF). Mutations in this gene have been found in individuals with progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 2. Alternative splicing results in additional coding and non-coding transcript variants. Pseudogenes of this gene have been defined on chromosomes 2 and 17. [provided by RefSeq, Jul 2017]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000313350RNase_HPF00075.246.2e-4411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
14506260Human RNase H1 uses one tryptophan and two lysines to position the enzyme at the 3'-DNA/5'-RNA terminus of the heteroduplex substrate.J Biol Chem2003 Dec 12Lima WF-
21191028Initiation of Epstein-Barr virus lytic replication requires transcription and the formation of a stable RNA-DNA hybrid molecule at OriLyt.J Virol2011 MarRennekamp AJdoi: 10.1128/JVI.02175-10
9512560A common 40 amino acid motif in eukaryotic RNases H1 and caulimovirus ORF VI proteins binds to duplex RNAs.Nucleic Acids Res1998 Apr 1Cerritelli SM-
17663799Evolution of ribonuclease H genes in prokaryotes to avoid inheritance of redundant genes.BMC Evol Biol2007 Jul 31Kochiwa H-
19228196Ribonuclease H: the enzymes in eukaryotes.FEBS J2009 MarCerritelli SMdoi: 10.1111/j.1742-4658.2009.06908.x
23500886Crystal structure of metagenome-derived LC11-RNase H1 in complex with RNA/DNA hybrid.J Struct Biol2013 MayNguyen TNdoi: 10.1016/j.jsb.2013.02.018
11319219Investigating the structure of human RNase H1 by site-directed mutagenesis.J Biol Chem2001 Jun 29Wu H-
18337749Specific recognition of RNA/DNA hybrid and enhancement of human RNase H1 activity by HBD.EMBO J2008 Apr 9Nowotny Mdoi: 10.1038/emboj.2008.44
25712094Identification and characterization of intracellular proteins that bind oligonucleotides with phosphorothioate linkages.Nucleic Acids Res2015 Mar 11Liang XHdoi: 10.1093/nar/gkv143
29499955A Sensitive InVitro Approach to Assess the Hybridization-Dependent Toxic Potential of High Affinity Gapmer Oligonucleotides.Mol Ther Nucleic Acids2018 Mar 2Dieckmann Adoi: 10.1016/j.omtn.2017.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000454734RNASEH1-203749-ENSP0000041164643 (aa)-F8WBP0
ENST00000464986RNASEH1-204514--- (aa)--
ENST00000315212RNASEH1-2011887-ENSP00000313350286 (aa)-O60930
ENST00000436842RNASEH1-2022120-ENSP0000040492643 (aa)-F8WD93
Gene Model
Click here to download ENSG00000171865's gene model file
Pathways
Pathway IDPathway NameSource
hsa03030DNA replicationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000171865's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000171865RNASEH18955.390ENSAPOG00000000412rnaseh18856.134Acanthochromis_polyacanthus
ENSG00000171865RNASEH19383.521ENSAMEG00000018433RNASEH110081.185Ailuropoda_melanoleuca
ENSG00000171865RNASEH18955.725ENSACIG00000014666rnaseh18656.226Amphilophus_citrinellus
ENSG00000171865RNASEH18956.877ENSAOCG00000015210rnaseh18857.249Amphiprion_ocellaris
ENSG00000171865RNASEH18957.249ENSAPEG00000014104rnaseh18857.621Amphiprion_percula
ENSG00000171865RNASEH18955.639ENSATEG00000000598rnaseh19355.639Anabas_testudineus
ENSG00000171865RNASEH18661.240ENSAPLG00000001961RNASEH110061.240Anas_platyrhynchos
ENSG00000171865RNASEH19851.084ENSACAG00000016857rnaseh110051.084Anolis_carolinensis
ENSG00000171865RNASEH110092.657ENSANAG00000024055RNASEH110092.657Aotus_nancymaae
ENSG00000171865RNASEH18954.815ENSACLG00000006741rnaseh18755.185Astatotilapia_calliptera
ENSG00000171865RNASEH19150.579ENSAMXG00000042940rnaseh19750.562Astyanax_mexicanus
ENSG00000171865RNASEH110078.322ENSBTAG00000016235RNASEH110078.322Bos_taurus
ENSG00000171865RNASEH18940.684WBGene00004382rnh-1.09540.684Caenorhabditis_elegans
ENSG00000171865RNASEH110091.379ENSCJAG00000035450RNASEH110091.379Callithrix_jacchus
ENSG00000171865RNASEH110081.882ENSCAFG00000003259RNASEH110081.882Canis_familiaris
ENSG00000171865RNASEH15492.857ENSCAFG00020004994RNASEH19992.857Canis_lupus_dingo
ENSG00000171865RNASEH18366.387ENSCHIG00000022230-10066.387Capra_hircus
ENSG00000171865RNASEH110077.352ENSCHIG00000022264-10077.352Capra_hircus
ENSG00000171865RNASEH110082.168ENSTSYG00000012926RNASEH19982.168Carlito_syrichta
ENSG00000171865RNASEH18581.893ENSCAPG00000004813RNASEH19981.893Cavia_aperea
ENSG00000171865RNASEH110077.320ENSCPOG00000022278Rnaseh19777.320Cavia_porcellus
ENSG00000171865RNASEH110090.690ENSCCAG00000038017RNASEH110090.690Cebus_capucinus
ENSG00000171865RNASEH110083.217ENSCATG00000016818-10083.217Cercocebus_atys
ENSG00000171865RNASEH110094.056ENSCATG00000016515-10094.056Cercocebus_atys
ENSG00000171865RNASEH110079.791ENSCLAG00000002440RNASEH110079.791Chinchilla_lanigera
ENSG00000171865RNASEH110092.657ENSCSAG00000006943RNASEH110092.657Chlorocebus_sabaeus
ENSG00000171865RNASEH16982.741ENSCHOG00000008547RNASEH19782.741Choloepus_hoffmanni
ENSG00000171865RNASEH19161.091ENSCPBG00000021620RNASEH19861.481Chrysemys_picta_bellii
ENSG00000171865RNASEH18939.273ENSCING00000014054-9139.273Ciona_intestinalis
ENSG00000171865RNASEH17638.565ENSCSAVG00000000009-9638.565Ciona_savignyi
ENSG00000171865RNASEH110093.357ENSCANG00000037763RNASEH110093.357Colobus_angolensis_palliatus
ENSG00000171865RNASEH110074.825ENSCGRG00001008950Rnaseh110076.224Cricetulus_griseus_chok1gshd
ENSG00000171865RNASEH110074.825ENSCGRG00000006029Rnaseh110076.224Cricetulus_griseus_crigri
ENSG00000171865RNASEH19053.053ENSCSEG00000005741rnaseh19352.239Cynoglossus_semilaevis
ENSG00000171865RNASEH18955.682ENSCVAG00000018717rnaseh18755.682Cyprinodon_variegatus
ENSG00000171865RNASEH18952.941ENSDARG00000042571rnaseh19652.941Danio_rerio
ENSG00000171865RNASEH110078.746ENSDNOG00000016056RNASEH110078.746Dasypus_novemcinctus
ENSG00000171865RNASEH110080.070ENSDORG00000000704Rnaseh110080.070Dipodomys_ordii
ENSG00000171865RNASEH19236.120FBgn0023171rnh19536.120Drosophila_melanogaster
ENSG00000171865RNASEH110074.913ENSETEG00000012674RNASEH110074.913Echinops_telfairi
ENSG00000171865RNASEH18945.211ENSEBUG00000006116rnaseh17745.211Eptatretus_burgeri
ENSG00000171865RNASEH19047.059ENSEBUG00000008898rnaseh19847.059Eptatretus_burgeri
ENSG00000171865RNASEH110082.578ENSEASG00005022200RNASEH19882.578Equus_asinus_asinus
ENSG00000171865RNASEH110082.578ENSECAG00000020695RNASEH19882.578Equus_caballus
ENSG00000171865RNASEH18955.109ENSELUG00000010112rnaseh19055.109Esox_lucius
ENSG00000171865RNASEH110082.230ENSFCAG00000025832RNASEH110082.230Felis_catus
ENSG00000171865RNASEH19159.075ENSFALG00000002069RNASEH19459.075Ficedula_albicollis
ENSG00000171865RNASEH110076.573ENSFDAG00000002035RNASEH18876.573Fukomys_damarensis
ENSG00000171865RNASEH18955.133ENSGMOG00000013818rnaseh18855.133Gadus_morhua
ENSG00000171865RNASEH19559.722ENSGALG00000016389RNASEH19759.722Gallus_gallus
ENSG00000171865RNASEH19054.682ENSGAFG00000001776rnaseh19054.682Gambusia_affinis
ENSG00000171865RNASEH18956.226ENSGACG00000011935rnaseh18856.226Gasterosteus_aculeatus
ENSG00000171865RNASEH19059.854ENSGAGG00000009150RNASEH16260.584Gopherus_agassizii
ENSG00000171865RNASEH110097.552ENSGGOG00000034822RNASEH110097.552Gorilla_gorilla
ENSG00000171865RNASEH18954.815ENSHBUG00000004666rnaseh18755.556Haplochromis_burtoni
ENSG00000171865RNASEH19876.786ENSHGLG00000002585Rnaseh19076.786Heterocephalus_glaber_female
ENSG00000171865RNASEH19876.786ENSHGLG00100005105Rnaseh19076.786Heterocephalus_glaber_male
ENSG00000171865RNASEH19152.768ENSHCOG00000012329rnaseh18952.768Hippocampus_comes
ENSG00000171865RNASEH19156.371ENSIPUG00000023060rnaseh19756.371Ictalurus_punctatus
ENSG00000171865RNASEH19880.000ENSSTOG00000012774RNASEH19980.000Ictidomys_tridecemlineatus
ENSG00000171865RNASEH110069.767ENSJJAG00000020238Rnaseh110079.070Jaculus_jaculus
ENSG00000171865RNASEH110066.084ENSJJAG00000008994-10066.084Jaculus_jaculus
ENSG00000171865RNASEH110073.427ENSJJAG00000021481-10073.427Jaculus_jaculus
ENSG00000171865RNASEH19054.717ENSKMAG00000001373rnaseh18854.717Kryptolebias_marmoratus
ENSG00000171865RNASEH19153.430ENSLBEG00000004480rnaseh19753.791Labrus_bergylta
ENSG00000171865RNASEH19253.357ENSLACG00000007100RNASEH19054.286Latimeria_chalumnae
ENSG00000171865RNASEH18957.721ENSLOCG00000017212rnaseh19656.929Lepisosteus_oculatus
ENSG00000171865RNASEH19980.769ENSLAFG00000015091RNASEH19980.769Loxodonta_africana
ENSG00000171865RNASEH110082.168ENSMFAG00000002323-10082.168Macaca_fascicularis
ENSG00000171865RNASEH110093.706ENSMFAG00000000063-10093.706Macaca_fascicularis
ENSG00000171865RNASEH110082.168ENSMMUG00000019280-10082.168Macaca_mulatta
ENSG00000171865RNASEH110093.357ENSMNEG00000040183-10093.357Macaca_nemestrina
ENSG00000171865RNASEH110082.867ENSMNEG00000029676-10082.867Macaca_nemestrina
ENSG00000171865RNASEH18595.062ENSMLEG00000039352-10095.062Mandrillus_leucophaeus
ENSG00000171865RNASEH110084.965ENSMLEG00000028662-10084.965Mandrillus_leucophaeus
ENSG00000171865RNASEH19058.364ENSMAMG00000019725rnaseh19458.364Mastacembelus_armatus
ENSG00000171865RNASEH18954.815ENSMZEG00005013006rnaseh18755.185Maylandia_zebra
ENSG00000171865RNASEH18060.324ENSMGAG00000013979RNASEH19960.324Meleagris_gallopavo
ENSG00000171865RNASEH19976.491ENSMAUG00000014957Rnaseh19976.491Mesocricetus_auratus
ENSG00000171865RNASEH110085.315ENSMICG00000033156RNASEH19985.315Microcebus_murinus
ENSG00000171865RNASEH110076.817ENSMOCG00000015522Rnaseh110076.817Microtus_ochrogaster
ENSG00000171865RNASEH18953.759ENSMMOG00000015902rnaseh18753.759Mola_mola
ENSG00000171865RNASEH19671.223ENSMODG00000014491-9671.223Monodelphis_domestica
ENSG00000171865RNASEH18063.755ENSMODG00000028814-9264.783Monodelphis_domestica
ENSG00000171865RNASEH19055.224ENSMALG00000010565rnaseh18855.224Monopterus_albus
ENSG00000171865RNASEH110077.972MGP_CAROLIEiJ_G0017660Rnaseh110077.972Mus_caroli
ENSG00000171865RNASEH110077.972ENSMUSG00000020630Rnaseh110077.972Mus_musculus
ENSG00000171865RNASEH19977.193MGP_PahariEiJ_G0029418Rnaseh19977.895Mus_pahari
ENSG00000171865RNASEH110078.322MGP_SPRETEiJ_G0018502Rnaseh110078.322Mus_spretus
ENSG00000171865RNASEH17282.439ENSMPUG00000012984RNASEH19982.439Mustela_putorius_furo
ENSG00000171865RNASEH19878.292ENSNGAG00000015966Rnaseh19278.292Nannospalax_galili
ENSG00000171865RNASEH18955.185ENSNBRG00000008739rnaseh18755.556Neolamprologus_brichardi
ENSG00000171865RNASEH110095.349ENSNLEG00000015400RNASEH110082.292Nomascus_leucogenys
ENSG00000171865RNASEH19185.115ENSNLEG00000000059-9885.115Nomascus_leucogenys
ENSG00000171865RNASEH19148.846ENSMEUG00000003610-9148.846Notamacropus_eugenii
ENSG00000171865RNASEH110073.010ENSOPRG00000005072RNASEH19973.010Ochotona_princeps
ENSG00000171865RNASEH110077.972ENSODEG00000000235Rnaseh19777.972Octodon_degus
ENSG00000171865RNASEH18955.185ENSONIG00000018697rnaseh19655.185Oreochromis_niloticus
ENSG00000171865RNASEH110081.818ENSOCUG00000006117RNASEH110081.818Oryctolagus_cuniculus
ENSG00000171865RNASEH18955.762ENSORLG00000018127rnaseh19455.762Oryzias_latipes
ENSG00000171865RNASEH18955.762ENSORLG00020013660rnaseh18755.762Oryzias_latipes_hni
ENSG00000171865RNASEH18955.639ENSORLG00015011338rnaseh18755.639Oryzias_latipes_hsok
ENSG00000171865RNASEH18154.321ENSOMEG00000004710rnaseh19054.321Oryzias_melastigma
ENSG00000171865RNASEH110082.927ENSOGAG00000017176RNASEH110082.927Otolemur_garnettii
ENSG00000171865RNASEH110067.466ENSOARG00000005386RNASEH110067.466Ovis_aries
ENSG00000171865RNASEH110099.650ENSPPAG00000034221RNASEH110099.650Pan_paniscus
ENSG00000171865RNASEH110082.230ENSPPRG00000015513RNASEH110082.230Panthera_pardus
ENSG00000171865RNASEH18585.185ENSPTIG00000019034RNASEH18585.185Panthera_tigris_altaica
ENSG00000171865RNASEH110099.650ENSPTRG00000011614RNASEH110099.650Pan_troglodytes
ENSG00000171865RNASEH18887.938ENSPTRG00000043403-9787.938Pan_troglodytes
ENSG00000171865RNASEH110093.357ENSPANG00000000443RNASEH110093.357Papio_anubis
ENSG00000171865RNASEH110081.395ENSPANG00000018246-10079.720Papio_anubis
ENSG00000171865RNASEH19050.192ENSPKIG00000003146rnaseh19750.575Paramormyrops_kingsleyae
ENSG00000171865RNASEH19558.763ENSPSIG00000002937RNASEH19861.049Pelodiscus_sinensis
ENSG00000171865RNASEH18952.510ENSPMGG00000017463rnaseh19052.510Periophthalmus_magnuspinnatus
ENSG00000171865RNASEH110077.352ENSPEMG00000022465-10077.700Peromyscus_maniculatus_bairdii
ENSG00000171865RNASEH15143.624ENSPCIG00000026047-8443.624Phascolarctos_cinereus
ENSG00000171865RNASEH19168.582ENSPCIG00000023334-9068.582Phascolarctos_cinereus
ENSG00000171865RNASEH19056.343ENSPFOG00000002841rnaseh19056.343Poecilia_formosa
ENSG00000171865RNASEH17050.244ENSPLAG00000021349-8050.244Poecilia_latipinna
ENSG00000171865RNASEH19055.970ENSPMEG00000016826rnaseh19055.970Poecilia_mexicana
ENSG00000171865RNASEH19055.515ENSPREG00000012197rnaseh19055.515Poecilia_reticulata
ENSG00000171865RNASEH110090.698ENSPPYG00000008067-10091.188Pongo_abelii
ENSG00000171865RNASEH110093.023ENSPPYG00000025873RNASEH110085.315Pongo_abelii
ENSG00000171865RNASEH19975.704ENSPCAG00000002500RNASEH19975.704Procavia_capensis
ENSG00000171865RNASEH110077.622ENSPCOG00000019444RNASEH19977.622Propithecus_coquereli
ENSG00000171865RNASEH19975.439ENSPVAG00000002070RNASEH19975.439Pteropus_vampyrus
ENSG00000171865RNASEH18954.104ENSPNYG00000001292rnaseh18754.478Pundamilia_nyererei
ENSG00000171865RNASEH19755.319ENSPNAG00000022344rnaseh19655.319Pygocentrus_nattereri
ENSG00000171865RNASEH19976.140ENSRNOG00000008584Rnaseh19977.544Rattus_norvegicus
ENSG00000171865RNASEH110092.657ENSRBIG00000034222RNASEH19992.657Rhinopithecus_bieti
ENSG00000171865RNASEH110093.007ENSRROG00000041761RNASEH19993.007Rhinopithecus_roxellana
ENSG00000171865RNASEH19052.174YMR234W-8252.174Saccharomyces_cerevisiae
ENSG00000171865RNASEH110090.345ENSSBOG00000025411RNASEH110090.345Saimiri_boliviensis_boliviensis
ENSG00000171865RNASEH19271.374ENSSHAG00000013051RNASEH18971.374Sarcophilus_harrisii
ENSG00000171865RNASEH19751.178ENSSFOG00015002709rnaseh19851.178Scleropages_formosus
ENSG00000171865RNASEH18956.981ENSSMAG00000007586rnaseh18757.358Scophthalmus_maximus
ENSG00000171865RNASEH18953.480ENSSDUG00000008217rnaseh19354.511Seriola_dumerili
ENSG00000171865RNASEH18753.585ENSSLDG00000000442rnaseh19356.225Seriola_lalandi_dorsalis
ENSG00000171865RNASEH19258.333ENSSPUG00000006644RNASEH19458.333Sphenodon_punctatus
ENSG00000171865RNASEH18956.439ENSSPAG00000009353rnaseh18757.197Stegastes_partitus
ENSG00000171865RNASEH19281.439ENSSSCG00000025305RNASEH19978.521Sus_scrofa
ENSG00000171865RNASEH19954.934ENSTGUG00000012980RNASEH19954.575Taeniopygia_guttata
ENSG00000171865RNASEH19851.701ENSTRUG00000015774rnaseh19653.676Takifugu_rubripes
ENSG00000171865RNASEH19157.519ENSTNIG00000010715rnaseh19657.519Tetraodon_nigroviridis
ENSG00000171865RNASEH110077.352ENSTTRG00000001615RNASEH110077.352Tursiops_truncatus
ENSG00000171865RNASEH15691.195ENSUAMG00000018254RNASEH18291.195Ursus_americanus
ENSG00000171865RNASEH16978.173ENSUMAG00000003941RNASEH16578.173Ursus_maritimus
ENSG00000171865RNASEH110067.247ENSVPAG00000011589RNASEH110067.247Vicugna_pacos
ENSG00000171865RNASEH110082.927ENSVVUG00000008633RNASEH19082.927Vulpes_vulpes
ENSG00000171865RNASEH19055.056ENSXETG00000001212rnaseh19155.056Xenopus_tropicalis
ENSG00000171865RNASEH19044.747ENSXETG00000030371-10044.747Xenopus_tropicalis
ENSG00000171865RNASEH19053.558ENSXMAG00000002357rnaseh19053.558Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000287magnesium ion binding-IEAFunction
GO:0003676nucleic acid binding9799596.TASFunction
GO:0003723RNA binding9799596.TASFunction
GO:0004523RNA-DNA hybrid ribonuclease activity21873635.IBAFunction
GO:0004523RNA-DNA hybrid ribonuclease activity21700224.IDAFunction
GO:0004540ribonuclease activity9799596.TASFunction
GO:0005737cytoplasm-IEAComponent
GO:0006401RNA catabolic process9799596.TASProcess
GO:0043137DNA replication, removal of RNA primer21873635.IBAProcess
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic21873635.IBAProcess

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