EuRBPDB

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  • Basic Information
  • Cancer Related Information

  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000172346 (Gene tree)
Gene ID
27254
Gene Symbol
CSDC2
Alias
PIPPin
Full Name
cold shock domain containing C2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
16,979 bases
Position
chr22:41,560,763-41,577,741
Accession
30359
RBP type
canonical RBP
Summary
(Cold Shock Domain Containing C2) is a Protein Coding gene. Diseases associated with CSDC2 include Pick Disease Of Brain. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and RNA binding. An important paralog of this gene is CARHSP1.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000302485CSDPF00313.221.4e-1211
ENSP00000417127CSDPF00313.224.4e-0911

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
8573167PIPPin, a putative RNA-binding protein specifically expressed in the rat brain.Biochem Biophys Res Commun1996 Jan 5Castiglia D-
10923677Specific neurons of brain cortex and cerebellum are PIPPin positive.Neuroreport2000 Jul 14Nastasi T-
19639222The effect of cadmium on brain cells in culture.Int J Mol Med2009 SepGerspacher C-
22020791RNA-binding activity of the rat calmodulin-binding PEP-19 protein and of the long PEP-19 isoform.Int J Mol Med2012 FebSaladino Pdoi: 10.3892/ijmm.2011.819
10446180PIPPin is a brain-specific protein that contains a cold-shock domain and binds specifically to H1 degrees and H3.3 mRNAs.J Biol Chem1999 Aug 20Nastasi T-
12767259RNA-binding ability of PIPPin requires the entire protein.J Cell Mol Med2003 Jan-MarRaimondi L-
20818482Biological effects of inorganic arsenic on primary cultures of rat astrocytes.Int J Mol Med2010 OctCatanzaro I-
30078185CSDC2, a cold shock domain RNA-binding protein in decidualization.J Cell Physiol2018 JanVallejo Gdoi: 10.1002/jcp.26885
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000306149CSDC2-2012777-ENSP00000302485153 (aa)-Q9Y534
ENST00000460790CSDC2-202721-ENSP00000417127151 (aa)-H7C4E7
Gene Model
Click here to download ENSG00000172346's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000172346rs784042592241574100?Educational attainment (years of education)30595370EFO_0004784
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000172346's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000172346CSDC28470.312ENSG00000153048CARHSP110064.706
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000172346CSDC210069.032ENSAPOG00000000741CSDC210069.032Acanthochromis_polyacanthus
ENSG00000172346CSDC29275.524ENSAPOG00000017688csdc2a9672.549Acanthochromis_polyacanthus
ENSG00000172346CSDC210059.259ENSAPOG00000016969carhsp110059.259Acanthochromis_polyacanthus
ENSG00000172346CSDC27674.359ENSAMEG00000010804CARHSP17274.359Ailuropoda_melanoleuca
ENSG00000172346CSDC210097.386ENSAMEG00000015626CSDC29797.386Ailuropoda_melanoleuca
ENSG00000172346CSDC210069.677ENSACIG00000010150CSDC210069.677Amphilophus_citrinellus
ENSG00000172346CSDC29274.126ENSACIG00000021654csdc2a9671.242Amphilophus_citrinellus
ENSG00000172346CSDC29663.758ENSACIG00000012156carhsp19463.758Amphilophus_citrinellus
ENSG00000172346CSDC210061.006ENSAOCG00000019869carhsp110061.006Amphiprion_ocellaris
ENSG00000172346CSDC210069.032ENSAOCG00000018974CSDC210069.032Amphiprion_ocellaris
ENSG00000172346CSDC29275.524ENSAOCG00000020795csdc2a9972.903Amphiprion_ocellaris
ENSG00000172346CSDC29275.524ENSAPEG00000020151csdc2a9175.524Amphiprion_percula
ENSG00000172346CSDC210069.032ENSAPEG00000012534CSDC210069.032Amphiprion_percula
ENSG00000172346CSDC210061.006ENSAPEG00000018550carhsp110061.006Amphiprion_percula
ENSG00000172346CSDC29773.333ENSATEG00000007251csdc2a9273.333Anabas_testudineus
ENSG00000172346CSDC29773.333ENSATEG00000007541csdc2a9273.333Anabas_testudineus
ENSG00000172346CSDC210069.032ENSATEG00000008111CSDC210069.032Anabas_testudineus
ENSG00000172346CSDC29563.087ENSATEG00000016159carhsp19363.087Anabas_testudineus
ENSG00000172346CSDC28276.800ENSAPLG00000005057CSDC29876.800Anas_platyrhynchos
ENSG00000172346CSDC210086.928ENSACAG00000004668CSDC210086.928Anolis_carolinensis
ENSG00000172346CSDC27865.289ENSACAG00000006749CARHSP18265.289Anolis_carolinensis
ENSG00000172346CSDC210098.039ENSANAG00000020803CSDC210098.039Aotus_nancymaae
ENSG00000172346CSDC29366.901ENSANAG00000027287CARHSP19366.901Aotus_nancymaae
ENSG00000172346CSDC28365.891ENSACLG00000009149carhsp110062.264Astatotilapia_calliptera
ENSG00000172346CSDC210068.387ENSACLG00000014697CSDC210068.387Astatotilapia_calliptera
ENSG00000172346CSDC210070.701ENSACLG00000019286csdc2a10070.701Astatotilapia_calliptera
ENSG00000172346CSDC27171.560ENSAMXG00000029841carhsp110059.748Astyanax_mexicanus
ENSG00000172346CSDC29970.861ENSAMXG00000008816csdc2a9870.861Astyanax_mexicanus
ENSG00000172346CSDC28577.692ENSAMXG00000030421CSDC210071.429Astyanax_mexicanus
ENSG00000172346CSDC27673.504ENSBTAG00000048459CARHSP19664.384Bos_taurus
ENSG00000172346CSDC210094.771ENSBTAG00000004004CSDC26294.771Bos_taurus
ENSG00000172346CSDC27865.289ENSCJAG00000044065-8259.603Callithrix_jacchus
ENSG00000172346CSDC27971.545ENSCJAG00000017286-9864.706Callithrix_jacchus
ENSG00000172346CSDC210098.693ENSCJAG00000002580CSDC210098.693Callithrix_jacchus
ENSG00000172346CSDC27175.926ENSCJAG00000006708-7275.926Callithrix_jacchus
ENSG00000172346CSDC27674.359ENSCAFG00000019003CARHSP17374.359Canis_familiaris
ENSG00000172346CSDC210092.857ENSCAFG00000001051CSDC29792.857Canis_familiaris
ENSG00000172346CSDC210096.732ENSCAFG00020001951CSDC210096.732Canis_lupus_dingo
ENSG00000172346CSDC27674.359ENSCAFG00020024860CARHSP17774.359Canis_lupus_dingo
ENSG00000172346CSDC210095.425ENSCHIG00000021658CSDC210095.425Capra_hircus
ENSG00000172346CSDC27673.504ENSCHIG00000015500CARHSP19664.384Capra_hircus
ENSG00000172346CSDC210097.386ENSTSYG00000037207CSDC210097.386Carlito_syrichta
ENSG00000172346CSDC27969.106ENSTSYG00000029597CARHSP19663.014Carlito_syrichta
ENSG00000172346CSDC29996.711ENSCAPG00000012133CSDC29996.711Cavia_aperea
ENSG00000172346CSDC28172.222ENSCAPG00000014360CARHSP110064.103Cavia_aperea
ENSG00000172346CSDC29996.711ENSCPOG00000037976CSDC29996.711Cavia_porcellus
ENSG00000172346CSDC28172.222ENSCPOG00000038393CARHSP110064.103Cavia_porcellus
ENSG00000172346CSDC210098.039ENSCCAG00000029849CSDC210098.039Cebus_capucinus
ENSG00000172346CSDC2100100.000ENSCATG00000035356CSDC2100100.000Cercocebus_atys
ENSG00000172346CSDC27972.358ENSCATG00000035657CARHSP110065.359Cercocebus_atys
ENSG00000172346CSDC27972.358ENSCLAG00000011037CARHSP110063.462Chinchilla_lanigera
ENSG00000172346CSDC210098.039ENSCLAG00000016705CSDC210098.039Chinchilla_lanigera
ENSG00000172346CSDC27670.940ENSCSAG00000019293-10062.092Chlorocebus_sabaeus
ENSG00000172346CSDC2100100.000ENSCSAG00000005794CSDC2100100.000Chlorocebus_sabaeus
ENSG00000172346CSDC210088.235ENSCPBG00000020542CSDC210088.235Chrysemys_picta_bellii
ENSG00000172346CSDC29165.248ENSCPBG00000026648CARHSP16065.248Chrysemys_picta_bellii
ENSG00000172346CSDC26855.556ENSCING00000023884-7655.556Ciona_intestinalis
ENSG00000172346CSDC25064.000ENSCANG00000027792CARHSP17664.000Colobus_angolensis_palliatus
ENSG00000172346CSDC210099.346ENSCANG00000036842CSDC210099.346Colobus_angolensis_palliatus
ENSG00000172346CSDC210096.753ENSCGRG00001021123Csdc210096.753Cricetulus_griseus_chok1gshd
ENSG00000172346CSDC27673.504ENSCGRG00001007246Carhsp110064.052Cricetulus_griseus_chok1gshd
ENSG00000172346CSDC210096.753ENSCGRG00000010845Csdc210096.753Cricetulus_griseus_crigri
ENSG00000172346CSDC27673.504ENSCGRG00000002942Carhsp110064.052Cricetulus_griseus_crigri
ENSG00000172346CSDC29869.281ENSCSEG00000019828csdc2a9769.935Cynoglossus_semilaevis
ENSG00000172346CSDC210065.806ENSCSEG00000006732CSDC210065.806Cynoglossus_semilaevis
ENSG00000172346CSDC29662.252ENSCSEG00000016664carhsp19462.252Cynoglossus_semilaevis
ENSG00000172346CSDC29274.825ENSCVAG00000006036csdc2a9274.825Cyprinodon_variegatus
ENSG00000172346CSDC29359.028ENSCVAG00000005982carhsp19559.028Cyprinodon_variegatus
ENSG00000172346CSDC210067.097ENSCVAG00000011020CSDC210067.097Cyprinodon_variegatus
ENSG00000172346CSDC29267.857ENSDARG00000041323csdc2a9267.857Danio_rerio
ENSG00000172346CSDC210058.065ENSDARG00000053129carhsp110062.420Danio_rerio
ENSG00000172346CSDC28468.750ENSDNOG00000047208CARHSP19461.935Dasypus_novemcinctus
ENSG00000172346CSDC27176.147ENSDORG00000025314Carhsp110064.052Dipodomys_ordii
ENSG00000172346CSDC210098.039ENSDORG00000024736Csdc210098.039Dipodomys_ordii
ENSG00000172346CSDC26759.223FBgn0036661CG97057159.223Drosophila_melanogaster
ENSG00000172346CSDC26174.468ENSETEG00000008180-10074.468Echinops_telfairi
ENSG00000172346CSDC261100.000ENSETEG00000019516CSDC2100100.000Echinops_telfairi
ENSG00000172346CSDC27071.028ENSEBUG00000007868carhsp17371.028Eptatretus_burgeri
ENSG00000172346CSDC27177.064ENSEASG00005011572CARHSP19665.068Equus_asinus_asinus
ENSG00000172346CSDC210097.386ENSEASG00005001534CSDC210097.386Equus_asinus_asinus
ENSG00000172346CSDC27177.064ENSECAG00000019386CARHSP19665.068Equus_caballus
ENSG00000172346CSDC210097.386ENSECAG00000022234CSDC210097.386Equus_caballus
ENSG00000172346CSDC210096.732ENSEEUG00000003639CSDC210096.732Erinaceus_europaeus
ENSG00000172346CSDC28065.600ENSELUG00000013309carhsp19160.897Esox_lucius
ENSG00000172346CSDC29967.974ENSELUG00000007859CSDC29667.974Esox_lucius
ENSG00000172346CSDC29272.222ENSELUG00000019696csdc2a9172.222Esox_lucius
ENSG00000172346CSDC27674.359ENSFCAG00000036654CARHSP17774.359Felis_catus
ENSG00000172346CSDC210098.039ENSFCAG00000038283CSDC210098.039Felis_catus
ENSG00000172346CSDC210087.582ENSFALG00000011950CSDC210087.582Ficedula_albicollis
ENSG00000172346CSDC28167.717ENSFALG00000004000CARHSP110060.256Ficedula_albicollis
ENSG00000172346CSDC210098.039ENSFDAG00000000190CSDC210098.039Fukomys_damarensis
ENSG00000172346CSDC28471.094ENSFDAG00000021539CARHSP110064.935Fukomys_damarensis
ENSG00000172346CSDC28963.043ENSFHEG00000020770carhsp19163.043Fundulus_heteroclitus
ENSG00000172346CSDC210067.742ENSFHEG00000020509CSDC210067.742Fundulus_heteroclitus
ENSG00000172346CSDC210071.338ENSFHEG00000012650csdc2a10071.338Fundulus_heteroclitus
ENSG00000172346CSDC26171.277ENSGMOG00000013294csdc2a10071.277Gadus_morhua
ENSG00000172346CSDC28265.079ENSGMOG00000003498carhsp18165.079Gadus_morhua
ENSG00000172346CSDC210088.235ENSGALG00000030101CSDC210088.235Gallus_gallus
ENSG00000172346CSDC28169.048ENSGALG00000053043CARHSP18965.493Gallus_gallus
ENSG00000172346CSDC210061.635ENSGAFG00000000987carhsp110061.635Gambusia_affinis
ENSG00000172346CSDC29274.825ENSGAFG00000008287csdc2a9174.825Gambusia_affinis
ENSG00000172346CSDC210067.742ENSGAFG00000010933CSDC210067.742Gambusia_affinis
ENSG00000172346CSDC29075.714ENSGACG00000004665csdc2a8974.150Gasterosteus_aculeatus
ENSG00000172346CSDC29260.690ENSGACG00000005857carhsp19560.690Gasterosteus_aculeatus
ENSG00000172346CSDC210088.235ENSGAGG00000017511CSDC210088.235Gopherus_agassizii
ENSG00000172346CSDC29165.248ENSGAGG00000003480CARHSP15965.248Gopherus_agassizii
ENSG00000172346CSDC28470.312ENSGGOG00000008888CARHSP110064.706Gorilla_gorilla
ENSG00000172346CSDC2100100.000ENSGGOG00000037916CSDC2100100.000Gorilla_gorilla
ENSG00000172346CSDC210068.387ENSHBUG00000017249CSDC210068.387Haplochromis_burtoni
ENSG00000172346CSDC210070.701ENSHBUG00000000103csdc2a10070.701Haplochromis_burtoni
ENSG00000172346CSDC28467.969ENSHBUG00000016107carhsp110062.893Haplochromis_burtoni
ENSG00000172346CSDC210097.386ENSHGLG00000016778CSDC210097.386Heterocephalus_glaber_female
ENSG00000172346CSDC29167.626ENSHGLG00000008429CARHSP110064.935Heterocephalus_glaber_female
ENSG00000172346CSDC210097.386ENSHGLG00100008740CSDC210097.386Heterocephalus_glaber_male
ENSG00000172346CSDC29167.626ENSHGLG00100005825CARHSP110065.584Heterocephalus_glaber_male
ENSG00000172346CSDC26172.340ENSHCOG00000020043carhsp16372.340Hippocampus_comes
ENSG00000172346CSDC210068.387ENSHCOG00000006797CSDC210068.387Hippocampus_comes
ENSG00000172346CSDC29971.429ENSHCOG00000010202csdc2a9671.429Hippocampus_comes
ENSG00000172346CSDC29272.340ENSIPUG00000019740CSDC29372.340Ictalurus_punctatus
ENSG00000172346CSDC27173.394ENSIPUG00000015017CARHSP110061.392Ictalurus_punctatus
ENSG00000172346CSDC29369.718ENSIPUG00000001089CSDC29967.320Ictalurus_punctatus
ENSG00000172346CSDC27674.359ENSSTOG00000007008CARHSP17774.359Ictidomys_tridecemlineatus
ENSG00000172346CSDC210098.039ENSSTOG00000020429CSDC210098.039Ictidomys_tridecemlineatus
ENSG00000172346CSDC210097.386ENSJJAG00000019289Csdc210097.386Jaculus_jaculus
ENSG00000172346CSDC27971.545ENSJJAG00000024253Carhsp110064.706Jaculus_jaculus
ENSG00000172346CSDC210069.032ENSKMAG00000014778CSDC210069.032Kryptolebias_marmoratus
ENSG00000172346CSDC210068.790ENSKMAG00000021992csdc2a10068.790Kryptolebias_marmoratus
ENSG00000172346CSDC29959.236ENSKMAG00000018995carhsp19959.236Kryptolebias_marmoratus
ENSG00000172346CSDC29273.427ENSLBEG00000002005csdc2a9670.588Labrus_bergylta
ENSG00000172346CSDC29662.500ENSLBEG00000007965carhsp19362.500Labrus_bergylta
ENSG00000172346CSDC29267.832ENSLBEG00000011005-9367.832Labrus_bergylta
ENSG00000172346CSDC26572.277ENSLACG00000011551CSDC29772.277Latimeria_chalumnae
ENSG00000172346CSDC210059.873ENSLACG00000002439CARHSP19759.873Latimeria_chalumnae
ENSG00000172346CSDC25079.221ENSLOCG00000011627csdc2a9379.221Lepisosteus_oculatus
ENSG00000172346CSDC28166.667ENSLOCG00000006547carhsp19361.290Lepisosteus_oculatus
ENSG00000172346CSDC27670.940ENSLAFG00000022498CARHSP110062.745Loxodonta_africana
ENSG00000172346CSDC210098.693ENSLAFG00000027155CSDC210098.693Loxodonta_africana
ENSG00000172346CSDC27972.358ENSMFAG00000031370CARHSP110065.359Macaca_fascicularis
ENSG00000172346CSDC210099.346ENSMFAG00000038565CSDC210099.346Macaca_fascicularis
ENSG00000172346CSDC27972.358ENSMMUG00000047806CARHSP110065.359Macaca_mulatta
ENSG00000172346CSDC210097.351ENSMMUG00000001852CSDC210097.351Macaca_mulatta
ENSG00000172346CSDC27972.358ENSMNEG00000029876CARHSP110065.359Macaca_nemestrina
ENSG00000172346CSDC210099.346ENSMNEG00000027703CSDC210099.346Macaca_nemestrina
ENSG00000172346CSDC27972.358ENSMLEG00000035670CARHSP110065.359Mandrillus_leucophaeus
ENSG00000172346CSDC2100100.000ENSMLEG00000034612CSDC2100100.000Mandrillus_leucophaeus
ENSG00000172346CSDC29274.825ENSMAMG00000003854csdc2a9174.825Mastacembelus_armatus
ENSG00000172346CSDC210067.742ENSMAMG00000007459CSDC210067.742Mastacembelus_armatus
ENSG00000172346CSDC29364.626ENSMAMG00000016068carhsp19164.626Mastacembelus_armatus
ENSG00000172346CSDC210068.387ENSMZEG00005003780CSDC210068.387Maylandia_zebra
ENSG00000172346CSDC210070.701ENSMZEG00005019207csdc2a10070.701Maylandia_zebra
ENSG00000172346CSDC28365.891ENSMZEG00005022941carhsp110062.264Maylandia_zebra
ENSG00000172346CSDC210088.235ENSMGAG00000012131CSDC29788.235Meleagris_gallopavo
ENSG00000172346CSDC27673.504ENSMAUG00000008339Carhsp110064.052Mesocricetus_auratus
ENSG00000172346CSDC210095.455ENSMAUG00000020821Csdc210095.455Mesocricetus_auratus
ENSG00000172346CSDC27175.229ENSMICG00000045170CARHSP17975.229Microcebus_murinus
ENSG00000172346CSDC210099.346ENSMICG00000041795CSDC210099.346Microcebus_murinus
ENSG00000172346CSDC210096.753ENSMOCG00000017299Csdc210096.753Microtus_ochrogaster
ENSG00000172346CSDC27673.504ENSMOCG00000001387Carhsp110064.052Microtus_ochrogaster
ENSG00000172346CSDC210065.806ENSMMOG00000002706CSDC210065.806Mola_mola
ENSG00000172346CSDC210062.264ENSMMOG00000009883carhsp19562.264Mola_mola
ENSG00000172346CSDC28176.984ENSMMOG00000003645csdc2a9176.984Mola_mola
ENSG00000172346CSDC210090.909ENSMODG00000016565CSDC210090.909Monodelphis_domestica
ENSG00000172346CSDC27170.642ENSMODG00000024949-7470.642Monodelphis_domestica
ENSG00000172346CSDC28168.254ENSMODG00000005721-9564.748Monodelphis_domestica
ENSG00000172346CSDC29364.626ENSMALG00000019090carhsp19164.626Monopterus_albus
ENSG00000172346CSDC210070.701ENSMALG00000008794csdc2a10070.701Monopterus_albus
ENSG00000172346CSDC210096.753MGP_CAROLIEiJ_G0020064Csdc210096.753Mus_caroli
ENSG00000172346CSDC27672.650MGP_CAROLIEiJ_G0020433Carhsp110062.745Mus_caroli
ENSG00000172346CSDC210096.104ENSMUSG00000042109Csdc210096.104Mus_musculus
ENSG00000172346CSDC27672.650ENSMUSG00000008393Carhsp110063.399Mus_musculus
ENSG00000172346CSDC210096.753MGP_PahariEiJ_G0020066Csdc210096.753Mus_pahari
ENSG00000172346CSDC27672.650MGP_PahariEiJ_G0016141Carhsp110063.399Mus_pahari
ENSG00000172346CSDC210096.753MGP_SPRETEiJ_G0020965Csdc210096.753Mus_spretus
ENSG00000172346CSDC27672.650MGP_SPRETEiJ_G0021327Carhsp110063.399Mus_spretus
ENSG00000172346CSDC210098.039ENSMPUG00000016392CSDC29798.039Mustela_putorius_furo
ENSG00000172346CSDC27674.359ENSMPUG00000014725CARHSP16974.359Mustela_putorius_furo
ENSG00000172346CSDC210096.078ENSMLUG00000002495CSDC210096.078Myotis_lucifugus
ENSG00000172346CSDC27175.229ENSMLUG00000009734CARHSP110061.290Myotis_lucifugus
ENSG00000172346CSDC210098.039ENSNGAG00000011207Csdc210098.039Nannospalax_galili
ENSG00000172346CSDC27673.504ENSNGAG00000023374Carhsp19365.493Nannospalax_galili
ENSG00000172346CSDC210070.701ENSNBRG00000004848csdc2a10070.701Neolamprologus_brichardi
ENSG00000172346CSDC26557.547ENSNBRG00000012209carhsp110057.547Neolamprologus_brichardi
ENSG00000172346CSDC210069.032ENSNBRG00000003278CSDC210069.032Neolamprologus_brichardi
ENSG00000172346CSDC26598.000ENSNLEG00000015551-10098.000Nomascus_leucogenys
ENSG00000172346CSDC27972.358ENSNLEG00000010069CARHSP110065.359Nomascus_leucogenys
ENSG00000172346CSDC28169.048ENSMEUG00000016403CARHSP110063.399Notamacropus_eugenii
ENSG00000172346CSDC210090.909ENSMEUG00000002050CSDC210090.909Notamacropus_eugenii
ENSG00000172346CSDC27972.358ENSOPRG00000010356CARHSP110064.935Ochotona_princeps
ENSG00000172346CSDC29991.447ENSOPRG00000010664CSDC29991.447Ochotona_princeps
ENSG00000172346CSDC210097.386ENSODEG00000015733CSDC210097.386Octodon_degus
ENSG00000172346CSDC28171.429ENSODEG00000012779CARHSP18571.429Octodon_degus
ENSG00000172346CSDC26968.224ENSONIG00000006546carhsp19463.504Oreochromis_niloticus
ENSG00000172346CSDC210068.387ENSONIG00000008441CSDC29768.387Oreochromis_niloticus
ENSG00000172346CSDC26588.000ENSOANG00000004309CSDC29588.000Ornithorhynchus_anatinus
ENSG00000172346CSDC26771.154ENSOANG00000008257CARHSP17865.323Ornithorhynchus_anatinus
ENSG00000172346CSDC210097.386ENSOCUG00000006938CSDC210097.386Oryctolagus_cuniculus
ENSG00000172346CSDC210067.742ENSORLG00000028829CSDC210067.742Oryzias_latipes
ENSG00000172346CSDC29274.825ENSORLG00000024428csdc2a8874.825Oryzias_latipes
ENSG00000172346CSDC29563.265ENSORLG00000027715carhsp19263.265Oryzias_latipes
ENSG00000172346CSDC210067.742ENSORLG00020007727CSDC210067.742Oryzias_latipes_hni
ENSG00000172346CSDC29275.524ENSORLG00020007361csdc2a8875.524Oryzias_latipes_hni
ENSG00000172346CSDC29563.265ENSORLG00020021079carhsp19263.265Oryzias_latipes_hni
ENSG00000172346CSDC29275.524ENSORLG00015006122csdc2a8875.524Oryzias_latipes_hsok
ENSG00000172346CSDC210060.377ENSORLG00015013674carhsp110060.377Oryzias_latipes_hsok
ENSG00000172346CSDC210067.742ENSORLG00015019006CSDC210067.742Oryzias_latipes_hsok
ENSG00000172346CSDC210059.748ENSOMEG00000021217carhsp18059.748Oryzias_melastigma
ENSG00000172346CSDC29873.203ENSOMEG00000008503csdc2a9773.203Oryzias_melastigma
ENSG00000172346CSDC210067.742ENSOMEG00000005779CSDC210067.742Oryzias_melastigma
ENSG00000172346CSDC28470.312ENSOGAG00000014708CARHSP18470.312Otolemur_garnettii
ENSG00000172346CSDC210098.693ENSOGAG00000002852CSDC210098.693Otolemur_garnettii
ENSG00000172346CSDC27674.359ENSOARG00000005359CARHSP18965.068Ovis_aries
ENSG00000172346CSDC210094.771ENSOARG00000018326CSDC29294.771Ovis_aries
ENSG00000172346CSDC2100100.000ENSPPAG00000032112CSDC2100100.000Pan_paniscus
ENSG00000172346CSDC28470.312ENSPPAG00000029112CARHSP110064.706Pan_paniscus
ENSG00000172346CSDC210098.039ENSPPRG00000005049CSDC210098.039Panthera_pardus
ENSG00000172346CSDC28169.048ENSPPRG00000009196CARHSP18669.048Panthera_pardus
ENSG00000172346CSDC28169.841ENSPTIG00000012345CARHSP18669.841Panthera_tigris_altaica
ENSG00000172346CSDC210098.039ENSPTIG00000017894CSDC210098.039Panthera_tigris_altaica
ENSG00000172346CSDC28470.312ENSPTRG00000007749CARHSP110064.706Pan_troglodytes
ENSG00000172346CSDC2100100.000ENSPTRG00000044110CSDC2100100.000Pan_troglodytes
ENSG00000172346CSDC2100100.000ENSPANG00000014567CSDC2100100.000Papio_anubis
ENSG00000172346CSDC27972.358ENSPANG00000020274CARHSP110065.359Papio_anubis
ENSG00000172346CSDC28476.744ENSPKIG00000008510CSDC28476.154Paramormyrops_kingsleyae
ENSG00000172346CSDC210064.780ENSPKIG00000017889carhsp19564.780Paramormyrops_kingsleyae
ENSG00000172346CSDC29771.333ENSPKIG00000003033CSDC29571.333Paramormyrops_kingsleyae
ENSG00000172346CSDC28169.048ENSPSIG00000009058CARHSP18469.048Pelodiscus_sinensis
ENSG00000172346CSDC210087.582ENSPSIG00000008362CSDC210087.582Pelodiscus_sinensis
ENSG00000172346CSDC29770.861ENSPMGG00000004353csdc2a9670.861Periophthalmus_magnuspinnatus
ENSG00000172346CSDC29768.212ENSPMGG00000018039CSDC29368.212Periophthalmus_magnuspinnatus
ENSG00000172346CSDC29962.500ENSPMGG00000006489carhsp19962.500Periophthalmus_magnuspinnatus
ENSG00000172346CSDC28168.254ENSPCIG00000025535CARHSP110062.092Phascolarctos_cinereus
ENSG00000172346CSDC28362.791ENSPFOG00000002443carhsp110060.377Poecilia_formosa
ENSG00000172346CSDC29274.825ENSPFOG00000016755csdc2a9174.825Poecilia_formosa
ENSG00000172346CSDC29274.825ENSPLAG00000001305csdc2a9174.825Poecilia_latipinna
ENSG00000172346CSDC28362.791ENSPLAG00000007455carhsp110060.377Poecilia_latipinna
ENSG00000172346CSDC210067.742ENSPLAG00000017520CSDC210067.742Poecilia_latipinna
ENSG00000172346CSDC210067.742ENSPMEG00000018356CSDC210067.742Poecilia_mexicana
ENSG00000172346CSDC28362.791ENSPMEG00000016255carhsp110061.006Poecilia_mexicana
ENSG00000172346CSDC29274.126ENSPMEG00000010311csdc2a9174.126Poecilia_mexicana
ENSG00000172346CSDC28363.566ENSPREG00000012687carhsp110061.635Poecilia_reticulata
ENSG00000172346CSDC29274.126ENSPREG00000020652csdc2a9174.126Poecilia_reticulata
ENSG00000172346CSDC2100100.000ENSPPYG00000011873CSDC2100100.000Pongo_abelii
ENSG00000172346CSDC27968.548ENSPPYG00000007085CARHSP110061.688Pongo_abelii
ENSG00000172346CSDC265100.000ENSPCAG00000014857CSDC2100100.000Procavia_capensis
ENSG00000172346CSDC27772.500ENSPCAG00000002081CARHSP18672.500Procavia_capensis
ENSG00000172346CSDC27771.667ENSPCOG00000021985CARHSP18271.667Propithecus_coquereli
ENSG00000172346CSDC210099.346ENSPCOG00000024484CSDC210099.346Propithecus_coquereli
ENSG00000172346CSDC27970.732ENSPVAG00000003125CARHSP110061.935Pteropus_vampyrus
ENSG00000172346CSDC210096.732ENSPVAG00000001165CSDC210096.732Pteropus_vampyrus
ENSG00000172346CSDC210070.064ENSPNYG00000004457csdc2a10070.064Pundamilia_nyererei
ENSG00000172346CSDC28366.667ENSPNYG00000015464carhsp110062.893Pundamilia_nyererei
ENSG00000172346CSDC210068.387ENSPNYG00000024039CSDC210068.387Pundamilia_nyererei
ENSG00000172346CSDC26776.471ENSPNAG00000003758carhsp19062.745Pygocentrus_nattereri
ENSG00000172346CSDC28477.519ENSPNAG00000013797CSDC210070.130Pygocentrus_nattereri
ENSG00000172346CSDC27673.504ENSRNOG00000002610Carhsp110064.052Rattus_norvegicus
ENSG00000172346CSDC210097.403ENSRNOG00000005332Csdc210097.403Rattus_norvegicus
ENSG00000172346CSDC26398.958ENSRBIG00000039404CSDC27098.958Rhinopithecus_bieti
ENSG00000172346CSDC27972.358ENSRBIG00000037853CARHSP110065.359Rhinopithecus_bieti
ENSG00000172346CSDC27972.358ENSRROG00000045591CARHSP110065.359Rhinopithecus_roxellana
ENSG00000172346CSDC2100100.000ENSRROG00000042848CSDC2100100.000Rhinopithecus_roxellana
ENSG00000172346CSDC27972.358ENSSBOG00000026653CARHSP110065.359Saimiri_boliviensis_boliviensis
ENSG00000172346CSDC210098.039ENSSBOG00000035590CSDC210098.039Saimiri_boliviensis_boliviensis
ENSG00000172346CSDC210090.909ENSSHAG00000010311CSDC210090.909Sarcophilus_harrisii
ENSG00000172346CSDC210060.366ENSSFOG00015022847carhsp110060.366Scleropages_formosus
ENSG00000172346CSDC29273.050ENSSFOG00015011532-9273.050Scleropages_formosus
ENSG00000172346CSDC29273.944ENSSFOG00015013686CSDC29073.944Scleropages_formosus
ENSG00000172346CSDC29667.785ENSSMAG00000005770CSDC26767.785Scophthalmus_maximus
ENSG00000172346CSDC210058.385ENSSMAG00000001136carhsp110058.385Scophthalmus_maximus
ENSG00000172346CSDC29273.427ENSSMAG00000007134csdc2a10070.064Scophthalmus_maximus
ENSG00000172346CSDC29274.825ENSSDUG00000008082csdc2a9174.825Seriola_dumerili
ENSG00000172346CSDC210060.000ENSSDUG00000007709carhsp110060.000Seriola_dumerili
ENSG00000172346CSDC210068.387ENSSDUG00000014967CSDC210068.387Seriola_dumerili
ENSG00000172346CSDC29274.825ENSSLDG00000009512csdc2a9174.825Seriola_lalandi_dorsalis
ENSG00000172346CSDC210058.788ENSSLDG00000016209carhsp110058.788Seriola_lalandi_dorsalis
ENSG00000172346CSDC210086.928ENSSPUG00000011628CSDC210086.928Sphenodon_punctatus
ENSG00000172346CSDC210062.581ENSSPUG00000015670CARHSP110062.581Sphenodon_punctatus
ENSG00000172346CSDC210059.877ENSSPAG00000015267carhsp110059.877Stegastes_partitus
ENSG00000172346CSDC29275.524ENSSPAG00000022972csdc2a9672.549Stegastes_partitus
ENSG00000172346CSDC210067.742ENSSPAG00000017991CSDC210067.742Stegastes_partitus
ENSG00000172346CSDC210097.386ENSSSCG00000000062CSDC210097.386Sus_scrofa
ENSG00000172346CSDC27673.504ENSSSCG00000026710CARHSP19665.068Sus_scrofa
ENSG00000172346CSDC210087.582ENSTGUG00000009898CSDC29487.582Taeniopygia_guttata
ENSG00000172346CSDC28170.635ENSTGUG00000004665CARHSP18370.635Taeniopygia_guttata
ENSG00000172346CSDC29274.126ENSTRUG00000017020csdc2a9574.126Takifugu_rubripes
ENSG00000172346CSDC210068.387ENSTRUG00000020554CSDC210068.387Takifugu_rubripes
ENSG00000172346CSDC27169.725ENSTRUG00000024161carhsp16969.725Takifugu_rubripes
ENSG00000172346CSDC28066.400ENSTNIG00000011153carhsp18266.400Tetraodon_nigroviridis
ENSG00000172346CSDC29276.056ENSTNIG00000012937csdc2a9076.056Tetraodon_nigroviridis
ENSG00000172346CSDC210097.386ENSTBEG00000011596CSDC210097.386Tupaia_belangeri
ENSG00000172346CSDC27972.358ENSTBEG00000005777CARHSP19566.187Tupaia_belangeri
ENSG00000172346CSDC27673.504ENSTTRG00000014828CARHSP17773.504Tursiops_truncatus
ENSG00000172346CSDC210096.732ENSTTRG00000006736CSDC210096.732Tursiops_truncatus
ENSG00000172346CSDC210097.386ENSUAMG00000022587-6397.386Ursus_americanus
ENSG00000172346CSDC27674.359ENSUAMG00000020301CARHSP17774.359Ursus_americanus
ENSG00000172346CSDC210097.386ENSUMAG00000021015CSDC26697.386Ursus_maritimus
ENSG00000172346CSDC27177.064ENSUMAG00000003723CARHSP15674.359Ursus_maritimus
ENSG00000172346CSDC210097.386ENSVVUG00000003532CSDC210097.386Vulpes_vulpes
ENSG00000172346CSDC27674.359ENSVVUG00000017377CARHSP17774.359Vulpes_vulpes
ENSG00000172346CSDC210061.146ENSXETG00000008696carhsp19361.146Xenopus_tropicalis
ENSG00000172346CSDC210079.085ENSXETG00000033238csdc210079.085Xenopus_tropicalis
ENSG00000172346CSDC210061.635ENSXCOG00000015383carhsp110061.635Xiphophorus_couchianus
ENSG00000172346CSDC210061.635ENSXMAG00000008676carhsp110061.635Xiphophorus_maculatus
ENSG00000172346CSDC210067.742ENSXMAG00000006935CSDC210067.742Xiphophorus_maculatus
ENSG00000172346CSDC29274.825ENSXMAG00000000696csdc2a9174.825Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding12801884.NASFunction
GO:0003730mRNA 3'-UTR binding21873635.IBAFunction
GO:0005515protein binding25416956.IPIFunction
GO:0005634nucleus-IEAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0006397mRNA processing-IEAProcess
GO:0008134transcription factor binding-IEAFunction
GO:0043488regulation of mRNA stability21873635.IBAProcess

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BRCAchr22415719165'UTRnovel0.17
BRCAchr22415751033'UTRnovel0.67
COADchr2241571999Frame_Shift_DelnovelP13Rfs*1010.47
COADchr22415719125'UTRnovel0.4
COADchr22415719205'UTRnovel0.3
COADchr2241573691Silentrs200666329G71G0.17
COADchr2241574775SilentNAT114T0.32
COADchr2241574846Frame_Shift_DelNAH140Tfs*1250.25
ESCAchr22415766263'UTRnovel0.29
GBMchr2241573714Missense_MutationNAS79L0.05CSD
HNSCchr2241573733SilentnovelI85I0.11
LUSCchr22415772833'Flanknovel0.08
MESOchr22415750093'UTRnovel1
OVchr2241573680Missense_MutationnovelV68L0.14CSD
PRADchr2241574865Missense_MutationnovelE144D0.33
PRADchr2241573752Missense_MutationNAE92K0.33
PRADchr2241573703Missense_MutationnovelQ75H0.14CSD
READchr2241573738Missense_Mutationrs761802158P87H0.48
READchr2241574764Missense_MutationNAD111N0.49
SARCchr2241572122Missense_Mutationrs769173409R53W0.04CSD
SKCMchr2241572133SilentNAT56T0.43
SKCMchr22415772743'Flanknovel0.36
SKCMchr2241573752Missense_MutationNAE92K0.44
SKCMchr22415773413'FlankNA0.37
SKCMchr2241573682SilentnovelV68V0.29
STADchr22415774143'Flanknovel0.41
UCECchr2241574842Missense_MutationnovelL137M0.35
UCECchr22415749613'UTRnovel0.54
UCECchr2241573767Missense_MutationnovelH97Y0.42
UCECchr22415772813'Flanknovel0.41
UCECchr2241573726Missense_MutationNAG83D0.22CSD
UCECchr2241573718Missense_MutationnovelQ80H0.16CSD
UCECchr2241573742Missense_MutationnovelE88D0.37
UCECchr22415719435'UTRnovel0.13
UCECchr2241572063Missense_MutationnovelR33M0.65
UCECchr22415718965'UTRnovel0.53
UCECchr22415749503'UTRNA0.23
UCECchr2241574847Silentrs751037652A138A0.28
UCECchr2241574820SilentnovelA129A0.38
UCECchr22415749513'UTRnovel0.08

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCDEL0.06250.21158
PCPGDEL0.33950.044123
THCADEL0.15630.046486
THYMDEL0.0650.063154

Survival Analysis
CancerP-value Q-value
THYM0.047

Kaplan-Meier Survival Analysis

KIRC0.016

Kaplan-Meier Survival Analysis

STAD0.0084

Kaplan-Meier Survival Analysis

ACC0.00012

Kaplan-Meier Survival Analysis

LUSC0.033

Kaplan-Meier Survival Analysis

COAD0.029

Kaplan-Meier Survival Analysis

PCPG0.031

Kaplan-Meier Survival Analysis

BLCA0.0094

Kaplan-Meier Survival Analysis

READ0.037

Kaplan-Meier Survival Analysis

LAML0.041

Kaplan-Meier Survival Analysis

GBM0.043

Kaplan-Meier Survival Analysis

LUAD0.048

Kaplan-Meier Survival Analysis

OV0.022

Kaplan-Meier Survival Analysis

Drugs

Select Dataset :


Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742


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