EuRBPDB

Description

Ensembl ID: ENSG00000173230 (Gene tree)
Gene ID: 2804
Gene Symbol: GOLGB1
Alias: GCP|GCP372|giantin|GOLIM1
Full Name: golgin B1
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 87,613 bases
Position: chr3:121,663,199-121,750,811
Accession: 4429
RBP type: non-canonical RBP
Summary: (Golgin B1) is a Protein Coding gene. Diseases associated with GOLGB1 include Familial Cold Autoinflammatory Syndrome 2. Among its related pathways are Clathrin derived vesicle budding and Transport to the Golgi and subsequent modification. Gene Ontology (GO) annotations related to this gene include sequence-specific DNA binding.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000489400	GOLGB1-206	3093	-	ENSP00000417767	1031 (aa)	-	H0Y867
ENST00000494517	GOLGB1-208	4959	-	ENSP00000418231	1640 (aa)	-	E7EU81
ENST00000491690	GOLGB1-207	901	-	ENSP00000420027	109 (aa)	-	H7C5I7
ENST00000614479	GOLGB1-209	11115	XM_017006192	ENSP00000484083	3184 (aa)	XP_016861681	Q14789
ENST00000340645	GOLGB1-201	11187	XM_006713588	ENSP00000341848	3259 (aa)	XP_006713651	Q14789
ENST00000393667	GOLGB1-202	11198	XM_005247371	ENSP00000377275	3269 (aa)	XP_005247428	Q14789
ENST00000472475	GOLGB1-203	280	-	ENSP00000417695	41 (aa)	-	C9J8Q0
ENST00000472829	GOLGB1-204	565	-	-	- (aa)	-	-
ENST00000482512	GOLGB1-205	10295	-	ENSP00000419519	39 (aa)	-	F8WF12

Gene Model

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	-	TAS	Component
GO:0003700	DNA-binding transcription factor activity	-	IEA	Function
GO:0003723	RNA binding	22658674.	HDA	Function
GO:0005515	protein binding	14980500.16169070.	IPI	Function
GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	15308636.	IDA	Component
GO:0005794	Golgi apparatus	22572157.22792322.	IDA	Component
GO:0005795	Golgi stack	7691276.	TAS	Component
GO:0005801	cis-Golgi network	-	IEA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	-	TAS	Process
GO:0007030	Golgi organization	7691276.	TAS	Process
GO:0016020	membrane	19946888.	HDA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0043565	sequence-specific DNA binding	-	IEA	Function
GO:1905793	protein localization to pericentriolar material	25205765.	IMP	Process