EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000173575 (Gene tree)
Gene ID
1106
Gene Symbol
CHD2
Alias
FLJ38614|DKFZp547I1315|DKFZp781D1727|DKFZp686E01200
Full Name
chromodomain helicase DNA binding protein 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
127,819 bases
Position
chr15:92,900,189-93,028,007
Accession
1917
RBP type
canonical RBP
Summary
The CHD family of proteins is characterized by the presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. CHD genes alter gene expression possibly by modification of chromatin structure thus altering access of the transcriptional apparatus to its chromosomal DNA template. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000486629ResIIIPF04851.159.2e-0811
ENSP00000377747ResIIIPF04851.159.9e-0811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
25961350Molecular basis of pregnancy-induced breast cancer prevention.Horm Mol Biol Clin Investig2012 Apr 1Russo Jdoi: 10.1515/hmbci-2011-0136.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000630016CHD2-219607-ENSP0000048693171 (aa)-A0A0D9SFV8
ENST00000625463CHD2-204340-ENSP00000486391113 (aa)-A0A0D9SF92
ENST00000630813CHD2-220452--- (aa)--
ENST00000627185CHD2-209533--- (aa)--
ENST00000636306CHD2-2231755--- (aa)--
ENST00000637613CHD2-228986-ENSP00000489976219 (aa)-A0A1B0GU59
ENST00000628375CHD2-2153202-ENSP00000487577425 (aa)-A0A0D9SGK0
ENST00000628118CHD2-213585--- (aa)--
ENST00000637789CHD2-229904-ENSP0000048976798 (aa)-A0A1B0GTM9
ENST00000635856CHD2-2214236--- (aa)--
ENST00000625662CHD2-2055127-ENSP0000048600777 (aa)-A0A0D9SEU0
ENST00000626782CHD2-2072131-ENSP00000486487514 (aa)-B7Z3I4
ENST00000629346CHD2-2181249-ENSP0000048729931 (aa)-A0A0D9SGA6
ENST00000636410CHD2-224100--- (aa)--
ENST00000629136CHD2-217480--- (aa)--
ENST00000420239CHD2-2022221-ENSP00000406581501 (aa)-O14647
ENST00000625243CHD2-203361-ENSP00000486417121 (aa)-A0A0D9SFA3
ENST00000628181CHD2-214545--- (aa)--
ENST00000394196CHD2-2019363-ENSP000003777471828 (aa)-O14647
ENST00000627622CHD2-2121740-ENSP0000048692645 (aa)-A0A0D9SFV4
ENST00000627200CHD2-210230--- (aa)--
ENST00000636881CHD2-2263545-ENSP00000489846954 (aa)-A0A1B0GTU9
ENST00000629104CHD2-216649-ENSP0000048568135 (aa)-A0A0D9SEH6
ENST00000625990CHD2-206888-ENSP0000048589057 (aa)-A0A0D9SEP7
ENST00000636861CHD2-225146--- (aa)--
ENST00000635922CHD2-222100--- (aa)--
ENST00000637572CHD2-2274452--- (aa)--
ENST00000626874CHD2-2087764-ENSP000004866291739 (aa)-O14647
ENST00000627460CHD2-211760-ENSP0000048598234 (aa)-A0A0D9SET4
Gene Model
Click here to download ENSG00000173575's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000173575Conscience4.885e-005-
ENSG00000173575Antihypertensive Agents5.6370000E-005-
ENSG00000173575Antihypertensive Agents4.7310000E-006-
ENSG00000173575Antihypertensive Agents4.4020000E-005-
ENSG00000173575Platelet Function Tests4.2300000E-006-
ENSG00000173575Schizophrenia8E-626198764
ENSG00000173575Immunoglobulins4E-623382691
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000173575rs781779801592937233GSchizophrenia26198764[NR]1.1235955EFO_0000692
ENSG00000173575rs71794321593021742CIgG glycosylation23382691[0.09-0.224] unit decrease0.1569EFO_0005193
ENSG00000173575rs620231451592973876TSelf-reported math ability30038396[0.016-0.026] unit increase0.0208EFO_0004875
ENSG00000173575rs116321121592925046CHighest math class taken30038396[0.01-0.02] unit decrease0.0151EFO_0004875
ENSG00000173575rs47780581592912839TEducational attainment (MTAG)30038396[0.007-0.012] unit decrease0.0095EFO_0004784
ENSG00000173575rs620231451592973876TSelf-reported math ability (MTAG)30038396[0.016-0.026] unit increase0.0207EFO_0004875
ENSG00000173575rs620231211592916223THighest math class taken (MTAG)30038396[0.014-0.023] unit decrease0.0188EFO_0004875
ENSG00000173575rs620231451592973876TCognitive performance (MTAG)30038396[0.014-0.026] unit increase0.0196EFO_0008354
ENSG00000173575rs5706011441592962562?General cognitive ability29844566z-score increase4.431EFO_0004337
ENSG00000173575rs47780581592912839TEducational attainment (years of education)30038396[0.0065-0.0119] unit decrease0.0092EFO_0004784
ENSG00000173575rs71706441593015948?Educational attainment (years of education)30595370EFO_0004784
ENSG00000173575rs620231211592916223?Menarche (age at onset)30595370EFO_0004703
ENSG00000173575rs22724611592979082AEducational attainment (years of education)30038396[0.0056-0.0114] unit increase0.0085EFO_0004784
ENSG00000173575rs71793641592904992?Mean corpuscular hemoglobin30595370EFO_0004527
ENSG00000173575rs10447781593027556?Mean corpuscular hemoglobin30595370EFO_0004527
ENSG00000173575rs116321121592925046CPulse pressure30224653[0.12-0.21] unit decrease0.1645EFO_0005763
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000173575's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000173575CHD28864.646ENSG00000127616SMARCA49042.105
ENSG00000173575CHD28661.856ENSG00000119969HELLS8542.804
ENSG00000173575CHD28794.898ENSG00000153922CHD19557.023
ENSG00000173575CHD28538.542ENSG00000116830TTF28535.246
ENSG00000173575CHD28962.376ENSG00000080503SMARCA27465.714
ENSG00000173575CHD28768.367ENSG00000111642CHD46737.062
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000173575CHD28797.959ENSAPOG00000008913chd210071.927Acanthochromis_polyacanthus
ENSG00000173575CHD210098.603ENSAMEG00000010805-10098.958Ailuropoda_melanoleuca
ENSG00000173575CHD28796.939ENSAOCG00000016332chd210069.409Amphiprion_ocellaris
ENSG00000173575CHD28796.939ENSAPEG00000016676chd210071.785Amphiprion_percula
ENSG00000173575CHD28797.959ENSATEG00000005246chd210071.568Anabas_testudineus
ENSG00000173575CHD29793.499ENSAPLG00000011141-10087.941Anas_platyrhynchos
ENSG00000173575CHD29788.235ENSACAG00000000088-9980.521Anolis_carolinensis
ENSG00000173575CHD210099.289ENSANAG00000024017-10099.289Aotus_nancymaae
ENSG00000173575CHD28797.959ENSACLG00000021370chd25480.171Astatotilapia_calliptera
ENSG00000173575CHD29999.167ENSBTAG00000017776CHD29996.930Bos_taurus
ENSG00000173575CHD210099.070ENSCJAG00000020444-10099.070Callithrix_jacchus
ENSG00000173575CHD210098.246ENSCAFG00000010998CHD210098.477Canis_familiaris
ENSG00000173575CHD210097.143ENSCHIG00000022261-9995.222Capra_hircus
ENSG00000173575CHD210098.632ENSTSYG00000003272-10098.632Carlito_syrichta
ENSG00000173575CHD210098.246ENSCPOG00000005800-10097.192Cavia_porcellus
ENSG00000173575CHD210099.289ENSCCAG00000035304-10099.289Cebus_capucinus
ENSG00000173575CHD210099.800ENSCATG00000031069-10099.781Cercocebus_atys
ENSG00000173575CHD210098.246ENSCLAG00000016269-10097.538Chinchilla_lanigera
ENSG00000173575CHD210099.836ENSCSAG00000017007-10099.836Chlorocebus_sabaeus
ENSG00000173575CHD210097.143ENSCHOG00000000608-8299.091Choloepus_hoffmanni
ENSG00000173575CHD210097.143ENSCPBG00000018049-9790.385Chrysemys_picta_bellii
ENSG00000173575CHD28783.673ENSCSAVG00000007580-9360.314Ciona_savignyi
ENSG00000173575CHD210099.726ENSCANG00000038126-10099.726Colobus_angolensis_palliatus
ENSG00000173575CHD210098.246ENSCGRG00001006649Chd210097.429Cricetulus_griseus_chok1gshd
ENSG00000173575CHD210098.246ENSCGRG00000018154Chd210097.429Cricetulus_griseus_crigri
ENSG00000173575CHD29670.282ENSCSEG00000003646chd29366.316Cynoglossus_semilaevis
ENSG00000173575CHD28797.959ENSCVAG00000002427chd29971.000Cyprinodon_variegatus
ENSG00000173575CHD28796.939ENSDARG00000060687chd210071.470Danio_rerio
ENSG00000173575CHD210098.246ENSDNOG00000009796-10097.702Dasypus_novemcinctus
ENSG00000173575CHD28794.898ENSEBUG00000014994chd28374.468Eptatretus_burgeri
ENSG00000173575CHD210098.249ENSEASG00005015526-99100.000Equus_asinus_asinus
ENSG00000173575CHD28797.959ENSELUG00000017981chd210070.762Esox_lucius
ENSG00000173575CHD29793.818ENSFALG00000010369-10089.016Ficedula_albicollis
ENSG00000173575CHD210098.246ENSFDAG00000020651-10097.484Fukomys_damarensis
ENSG00000173575CHD28797.959ENSFHEG00000002119chd29171.385Fundulus_heteroclitus
ENSG00000173575CHD28797.959ENSGMOG00000002890chd29970.456Gadus_morhua
ENSG00000173575CHD29793.283ENSGALG00000006949CHD210088.388Gallus_gallus
ENSG00000173575CHD28797.959ENSGAFG00000001905chd29769.685Gambusia_affinis
ENSG00000173575CHD28797.959ENSGACG00000013246chd210070.427Gasterosteus_aculeatus
ENSG00000173575CHD210097.143ENSGAGG00000013176-9597.753Gopherus_agassizii
ENSG00000173575CHD2100100.000ENSGGOG00000015677CHD210098.359Gorilla_gorilla
ENSG00000173575CHD28797.959ENSHBUG00000017947chd210071.651Haplochromis_burtoni
ENSG00000173575CHD210098.246ENSHGLG00000004435CHD210097.210Heterocephalus_glaber_female
ENSG00000173575CHD210098.246ENSHGLG00100016376-10096.554Heterocephalus_glaber_male
ENSG00000173575CHD28797.959ENSHCOG00000008855chd29866.376Hippocampus_comes
ENSG00000173575CHD28796.939ENSIPUG00000000488chd29967.668Ictalurus_punctatus
ENSG00000173575CHD210098.578ENSSTOG00000001270-10098.578Ictidomys_tridecemlineatus
ENSG00000173575CHD2100100.000ENSJJAG00000000213Chd210097.374Jaculus_jaculus
ENSG00000173575CHD28995.050ENSKMAG00000015849chd29972.980Kryptolebias_marmoratus
ENSG00000173575CHD210098.246ENSLAFG00000016885-10097.389Loxodonta_africana
ENSG00000173575CHD2100100.000ENSMFAG00000033343-10099.891Macaca_fascicularis
ENSG00000173575CHD2100100.000ENSMMUG00000011782-10099.891Macaca_mulatta
ENSG00000173575CHD2100100.000ENSMNEG00000036875-10099.508Macaca_nemestrina
ENSG00000173575CHD210099.836ENSMLEG00000035026-10099.836Mandrillus_leucophaeus
ENSG00000173575CHD28797.959ENSMAMG00000009082chd210070.800Mastacembelus_armatus
ENSG00000173575CHD28797.959ENSMZEG00005021333chd25480.171Maylandia_zebra
ENSG00000173575CHD29793.074ENSMGAG00000008966-9988.209Meleagris_gallopavo
ENSG00000173575CHD210098.246ENSMICG00000000332-10096.991Microcebus_murinus
ENSG00000173575CHD210098.246ENSMOCG00000015124Chd210097.157Microtus_ochrogaster
ENSG00000173575CHD210097.143ENSMODG00000013158-10092.546Monodelphis_domestica
ENSG00000173575CHD28797.959ENSMALG00000007755chd25280.922Monopterus_albus
ENSG00000173575CHD210097.143MGP_CAROLIEiJ_G0029860Chd210096.718Mus_caroli
ENSG00000173575CHD210097.143ENSMUSG00000078671Chd210096.444Mus_musculus
ENSG00000173575CHD210097.143MGP_PahariEiJ_G0013082Chd210096.720Mus_pahari
ENSG00000173575CHD210097.143MGP_SPRETEiJ_G0030962Chd210096.554Mus_spretus
ENSG00000173575CHD210098.468ENSMPUG00000017577-10098.468Mustela_putorius_furo
ENSG00000173575CHD297100.000ENSMLUG00000009292-10095.223Myotis_lucifugus
ENSG00000173575CHD210098.246ENSNGAG00000010792Chd210098.031Nannospalax_galili
ENSG00000173575CHD28797.959ENSNBRG00000020591chd29074.862Neolamprologus_brichardi
ENSG00000173575CHD2100100.000ENSNLEG00000012349-10097.155Nomascus_leucogenys
ENSG00000173575CHD28090.000ENSMEUG00000001522-7689.764Notamacropus_eugenii
ENSG00000173575CHD210096.444ENSODEG00000016028-10096.444Octodon_degus
ENSG00000173575CHD28797.959ENSONIG00000015136chd210072.082Oreochromis_niloticus
ENSG00000173575CHD210091.429ENSOANG00000004385-9988.937Ornithorhynchus_anatinus
ENSG00000173575CHD210098.246ENSOCUG00000001628-9997.573Oryctolagus_cuniculus
ENSG00000173575CHD28797.959ENSORLG00000008403chd210070.483Oryzias_latipes
ENSG00000173575CHD28797.959ENSORLG00020004138chd210070.699Oryzias_latipes_hni
ENSG00000173575CHD29772.464ENSORLG00015017721chd29466.667Oryzias_latipes_hsok
ENSG00000173575CHD28797.959ENSOMEG00000005831chd210064.817Oryzias_melastigma
ENSG00000173575CHD210098.246ENSOGAG00000010399-10096.335Otolemur_garnettii
ENSG00000173575CHD210097.143ENSOARG00000010343-10095.624Ovis_aries
ENSG00000173575CHD2100100.000ENSPPAG00000030381-10098.853Pan_paniscus
ENSG00000173575CHD2100100.000ENSPTRG00000007478CHD210099.945Pan_troglodytes
ENSG00000173575CHD210099.800ENSPANG00000033355-10096.882Papio_anubis
ENSG00000173575CHD28797.959ENSPKIG00000000495chd210071.321Paramormyrops_kingsleyae
ENSG00000173575CHD28797.959ENSPMGG00000009941chd29970.603Periophthalmus_magnuspinnatus
ENSG00000173575CHD210098.246ENSPEMG00000019507Chd210097.374Peromyscus_maniculatus_bairdii
ENSG00000173575CHD28794.898ENSPMAG00000003871-10082.543Petromyzon_marinus
ENSG00000173575CHD210097.143ENSPCIG00000009417-10092.145Phascolarctos_cinereus
ENSG00000173575CHD28797.959ENSPFOG00000007050chd210072.028Poecilia_formosa
ENSG00000173575CHD27391.463ENSPFOG00000000291-8168.676Poecilia_formosa
ENSG00000173575CHD28797.959ENSPLAG00000005067chd210072.327Poecilia_latipinna
ENSG00000173575CHD28797.959ENSPMEG00000019628chd210071.974Poecilia_mexicana
ENSG00000173575CHD2100100.000ENSPPYG00000006799-10098.632Pongo_abelii
ENSG00000173575CHD210098.687ENSPCOG00000028084-10098.687Propithecus_coquereli
ENSG00000173575CHD28797.959ENSPNYG00000010273chd25480.171Pundamilia_nyererei
ENSG00000173575CHD28796.939ENSPNAG00000016719chd29969.520Pygocentrus_nattereri
ENSG00000173575CHD210098.246ENSRNOG00000012716Chd210096.663Rattus_norvegicus
ENSG00000173575CHD210099.601ENSRBIG00000036875-10097.540Rhinopithecus_bieti
ENSG00000173575CHD210099.617ENSRROG00000041087-10099.617Rhinopithecus_roxellana
ENSG00000173575CHD210099.453ENSSBOG00000023754-10099.453Saimiri_boliviensis_boliviensis
ENSG00000173575CHD210097.143ENSSHAG00000012513-10092.709Sarcophilus_harrisii
ENSG00000173575CHD28797.959ENSSFOG00015023759chd210072.953Scleropages_formosus
ENSG00000173575CHD28797.959ENSSMAG00000001726chd210070.172Scophthalmus_maximus
ENSG00000173575CHD28797.959ENSSLDG00000001146chd210070.348Seriola_lalandi_dorsalis
ENSG00000173575CHD29894.643ENSSARG00000014112-8298.333Sorex_araneus
ENSG00000173575CHD29790.456ENSSPUG00000011266-9984.228Sphenodon_punctatus
ENSG00000173575CHD28797.959ENSSPAG00000016452chd25380.600Stegastes_partitus
ENSG00000173575CHD210098.802ENSSSCG00000002266-10098.687Sus_scrofa
ENSG00000173575CHD29793.818ENSTGUG00000008540-10088.986Taeniopygia_guttata
ENSG00000173575CHD28796.970ENSTRUG00000008842chd28768.052Takifugu_rubripes
ENSG00000173575CHD28797.959ENSTNIG00000010760chd29773.008Tetraodon_nigroviridis
ENSG00000173575CHD210098.246ENSTBEG00000017730-8397.797Tupaia_belangeri
ENSG00000173575CHD210097.143ENSTTRG00000000430-9598.182Tursiops_truncatus
ENSG00000173575CHD210098.403ENSUMAG00000000083-10095.295Ursus_maritimus
ENSG00000173575CHD210098.246ENSVPAG00000009645-8698.195Vicugna_pacos
ENSG00000173575CHD29990.000ENSXETG00000024129chd27381.036Xenopus_tropicalis
ENSG00000173575CHD28797.959ENSXCOG00000020255chd29969.520Xiphophorus_couchianus
ENSG00000173575CHD28797.959ENSXMAG00000002707chd210072.097Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding-ISSFunction
GO:0003677DNA binding9326634.TASFunction
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0004003ATP-dependent DNA helicase activity9326634.TASFunction
GO:0005515protein binding21516116.25416956.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus-IDAComponent
GO:0005634nucleus-ISSComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005730nucleolus-IDAComponent
GO:0006325chromatin organization-IEAProcess
GO:0006357regulation of transcription by RNA polymerase II9326634.TASProcess
GO:0007517muscle organ development-ISSProcess
GO:0032508DNA duplex unwinding-IEAProcess
GO:0042393histone binding-ISSFunction
GO:0043231intracellular membrane-bounded organelle-IDAComponent

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