EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000175581 (Gene tree)
Gene ID
51642
Gene Symbol
MRPL48
Alias
CGI-118
Full Name
mitochondrial ribosomal protein L48
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
77,818 bases
Position
chr11:73,787,316-73,865,133
Accession
16653
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. A pseudogene corresponding to this gene is found on chromosome 6p. Several transcript variants, some protein-coding and some non-protein coding, have been found for this gene. [provided by RefSeq, Jan 2016]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000308717Ribosomal_S10PF00338.222.4e-1511
ENSP00000321539Ribosomal_S10PF00338.222.8e-1211
ENSP00000381497Ribosomal_S10PF00338.222.8e-1211
ENSP00000399076Ribosomal_S10PF00338.222.8e-1211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000497094MRPL48-205531-ENSP0000043963210 (aa)-A0A140TA24
ENST00000537007MRPL48-208287-ENSP0000044614413 (aa)-F5H471
ENST00000544819MRPL48-214742-ENSP0000044214650 (aa)-F5GZH8
ENST00000540162MRPL48-2091004-ENSP0000044192552 (aa)-F5GWB4
ENST00000542303MRPL48-210661-ENSP00000443685121 (aa)-F5H8D0
ENST00000543374MRPL48-212463--- (aa)--
ENST00000543058MRPL48-211699-ENSP0000044287850 (aa)-F5H717
ENST00000398483MRPL48-2031058-ENSP00000381497113 (aa)-F5H702
ENST00000411840MRPL48-2041197XM_017017919ENSP00000399076113 (aa)XP_016873408F5H702
ENST00000544140MRPL48-213996-ENSP0000044444150 (aa)-F5GZH8
ENST00000535277MRPL48-207598-ENSP0000043957326 (aa)-F5H1L2
ENST00000508278MRPL48-2061560-ENSP0000044511141 (aa)-F5H4A2
ENST00000310614MRPL48-2011536-ENSP00000308717212 (aa)-Q96GC5
ENST00000314282MRPL48-2021922-ENSP00000321539113 (aa)-F5H702
Gene Model
Click here to download ENSG00000175581's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000175581Creatinine5.2880000E-005-
ENSG00000175581Creatinine9.4990000E-005-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000175581rs2005745041173812735ATTNicotine withdrawal symptom count29532581[0.29-0.65] unit increase0.47EFO_0009263
ENSG00000175581rs2005745041173812735ATTNicotine withdrawal29532581[0.063-0.141] unit increase0.1021046EFO_0009362
ENSG00000175581rs1134850901173861450AMajor depressive disorder29317602[0.2-0.44] unit decrease0.32EFO_0003761
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000175581's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000175581MRPL4810069.231ENSAPOG00000013955mrpl489150.000Acanthochromis_polyacanthus
ENSG00000175581MRPL489991.964ENSAMEG00000017282MRPL489789.268Ailuropoda_melanoleuca
ENSG00000175581MRPL4810065.385ENSACIG00000009743mrpl488454.878Amphilophus_citrinellus
ENSG00000175581MRPL4810065.385ENSAOCG00000004158mrpl489149.490Amphiprion_ocellaris
ENSG00000175581MRPL4810065.385ENSAPEG00000024029mrpl489148.980Amphiprion_percula
ENSG00000175581MRPL4810060.177ENSATEG00000012425mrpl488654.237Anabas_testudineus
ENSG00000175581MRPL489971.429ENSAPLG00000008046MRPL489961.353Anas_platyrhynchos
ENSG00000175581MRPL4810076.923ENSACAG00000006382MRPL489057.754Anolis_carolinensis
ENSG00000175581MRPL4810098.507ENSANAG00000036546MRPL489994.787Aotus_nancymaae
ENSG00000175581MRPL489955.357ENSACLG00000024077mrpl489146.429Astatotilapia_calliptera
ENSG00000175581MRPL4810076.923ENSAMXG00000006784mrpl489952.358Astyanax_mexicanus
ENSG00000175581MRPL4810091.150ENSBTAG00000008347MRPL489986.256Bos_taurus
ENSG00000175581MRPL4810097.015ENSCJAG00000015867MRPL489994.787Callithrix_jacchus
ENSG00000175581MRPL489894.340ENSCAFG00000008462-10082.857Canis_familiaris
ENSG00000175581MRPL489993.750ENSCAFG00000005585-9990.857Canis_familiaris
ENSG00000175581MRPL4810080.769ENSCAFG00020002202-5381.905Canis_lupus_dingo
ENSG00000175581MRPL4810091.150ENSCHIG00000013981MRPL489986.730Capra_hircus
ENSG00000175581MRPL4810094.545ENSTSYG00000012895MRPL489990.521Carlito_syrichta
ENSG00000175581MRPL4810088.462ENSCAPG00000013554-10093.220Cavia_aperea
ENSG00000175581MRPL4810092.035ENSCPOG00000013291MRPL4810085.849Cavia_porcellus
ENSG00000175581MRPL489895.385ENSCCAG00000037377-9688.517Cebus_capucinus
ENSG00000175581MRPL4810097.015ENSCCAG00000024861-9993.839Cebus_capucinus
ENSG00000175581MRPL489998.214ENSCATG00000008832MRPL489997.630Cercocebus_atys
ENSG00000175581MRPL4810088.462ENSCATG00000026811-9980.095Cercocebus_atys
ENSG00000175581MRPL4810090.909ENSCLAG00000014653MRPL489985.308Chinchilla_lanigera
ENSG00000175581MRPL4810095.522ENSCSAG00000004059MRPL489995.735Chlorocebus_sabaeus
ENSG00000175581MRPL4810088.462ENSCHOG00000003662MRPL489974.468Choloepus_hoffmanni
ENSG00000175581MRPL489262.264ENSCPBG00000000043MRPL489262.264Chrysemys_picta_bellii
ENSG00000175581MRPL4810037.607ENSCING00000013289-8334.104Ciona_intestinalis
ENSG00000175581MRPL489934.167ENSCSAVG00000006671-8533.333Ciona_savignyi
ENSG00000175581MRPL489997.321ENSCANG00000030769MRPL489996.209Colobus_angolensis_palliatus
ENSG00000175581MRPL4810088.462ENSCGRG00001021190Mrpl489982.464Cricetulus_griseus_chok1gshd
ENSG00000175581MRPL4810088.462ENSCGRG00000004097Mrpl489982.464Cricetulus_griseus_crigri
ENSG00000175581MRPL489958.036ENSCSEG00000017376mrpl489545.098Cynoglossus_semilaevis
ENSG00000175581MRPL4810061.538ENSCVAG00000014692mrpl489547.317Cyprinodon_variegatus
ENSG00000175581MRPL4810065.385ENSDARG00000035167mrpl489949.289Danio_rerio
ENSG00000175581MRPL489991.964ENSDNOG00000002177MRPL489987.429Dasypus_novemcinctus
ENSG00000175581MRPL4810089.381ENSDORG00000000644-10089.381Dipodomys_ordii
ENSG00000175581MRPL489233.654FBgn0031357mRpL487032.540Drosophila_melanogaster
ENSG00000175581MRPL4810084.071ENSETEG00000009413MRPL488273.934Echinops_telfairi
ENSG00000175581MRPL4810041.593ENSEBUG00000003240mrpl488940.571Eptatretus_burgeri
ENSG00000175581MRPL4810092.035ENSEASG00005017939MRPL489088.000Equus_asinus_asinus
ENSG00000175581MRPL4810092.035ENSECAG00000022115MRPL489986.730Equus_caballus
ENSG00000175581MRPL4810061.538ENSELUG00000008942mrpl488255.172Esox_lucius
ENSG00000175581MRPL4810094.545ENSFCAG00000025668MRPL4810092.920Felis_catus
ENSG00000175581MRPL489970.536ENSFALG00000008015MRPL489957.561Ficedula_albicollis
ENSG00000175581MRPL4810090.909ENSFDAG00000010990MRPL489984.834Fukomys_damarensis
ENSG00000175581MRPL4810061.538ENSFHEG00000020130mrpl488950.526Fundulus_heteroclitus
ENSG00000175581MRPL4810057.692ENSGMOG00000018272mrpl489752.410Gadus_morhua
ENSG00000175581MRPL489970.536ENSGALG00000017319MRPL489860.784Gallus_gallus
ENSG00000175581MRPL4810065.385ENSGAFG00000004136mrpl489049.738Gambusia_affinis
ENSG00000175581MRPL4810065.385ENSGACG00000018902mrpl489850.246Gasterosteus_aculeatus
ENSG00000175581MRPL489972.222ENSGAGG00000005045MRPL489960.190Gopherus_agassizii
ENSG00000175581MRPL48100100.000ENSGGOG00000022915MRPL4810099.115Gorilla_gorilla
ENSG00000175581MRPL4810088.462ENSGGOG00000013682-9986.432Gorilla_gorilla
ENSG00000175581MRPL489953.571ENSHBUG00000002169mrpl489145.408Haplochromis_burtoni
ENSG00000175581MRPL4810090.909ENSHGLG00000006113MRPL4810089.381Heterocephalus_glaber_female
ENSG00000175581MRPL4810090.909ENSHGLG00100014660MRPL489986.730Heterocephalus_glaber_male
ENSG00000175581MRPL4810065.385ENSHCOG00000013282mrpl489947.500Hippocampus_comes
ENSG00000175581MRPL4810065.385ENSIPUG00000021795Mrpl489950.711Ictalurus_punctatus
ENSG00000175581MRPL4810090.909ENSSTOG00000010694MRPL489984.834Ictidomys_tridecemlineatus
ENSG00000175581MRPL4810058.407ENSKMAG00000010818mrpl489947.170Kryptolebias_marmoratus
ENSG00000175581MRPL4810069.231ENSLBEG00000002181mrpl489949.268Labrus_bergylta
ENSG00000175581MRPL489957.407ENSLACG00000004317MRPL489945.498Latimeria_chalumnae
ENSG00000175581MRPL4810069.231ENSLOCG00000006190mrpl489556.219Lepisosteus_oculatus
ENSG00000175581MRPL4810084.956ENSLAFG00000003800MRPL489982.286Loxodonta_africana
ENSG00000175581MRPL489998.214ENSMFAG00000003172MRPL489997.549Macaca_fascicularis
ENSG00000175581MRPL489998.214ENSMMUG00000014680MRPL489997.630Macaca_mulatta
ENSG00000175581MRPL489990.566ENSMMUG00000008225-9979.621Macaca_mulatta
ENSG00000175581MRPL4810088.462ENSMNEG00000033728-9881.731Macaca_nemestrina
ENSG00000175581MRPL4810097.345ENSMNEG00000043715MRPL4810097.345Macaca_nemestrina
ENSG00000175581MRPL4810092.308ENSMLEG00000043784-9981.991Mandrillus_leucophaeus
ENSG00000175581MRPL489998.214ENSMLEG00000025711MRPL489997.156Mandrillus_leucophaeus
ENSG00000175581MRPL4810061.538ENSMAMG00000011802mrpl489549.020Mastacembelus_armatus
ENSG00000175581MRPL4810057.692ENSMZEG00005021086mrpl489146.429Maylandia_zebra
ENSG00000175581MRPL489973.214ENSMGAG00000015300MRPL489962.439Meleagris_gallopavo
ENSG00000175581MRPL4810087.611ENSMAUG00000000711Mrpl489981.991Mesocricetus_auratus
ENSG00000175581MRPL4810092.308ENSMICG00000028005-8886.256Microcebus_murinus
ENSG00000175581MRPL4810092.308ENSMICG00000012645-9989.100Microcebus_murinus
ENSG00000175581MRPL4810088.462ENSMOCG00000013808Mrpl4810087.611Microtus_ochrogaster
ENSG00000175581MRPL4810057.692ENSMMOG00000020651mrpl489956.637Mola_mola
ENSG00000175581MRPL4810076.991ENSMODG00000007576MRPL489972.038Monodelphis_domestica
ENSG00000175581MRPL4810053.982ENSMALG00000008851mrpl489045.918Monopterus_albus
ENSG00000175581MRPL487687.209MGP_CAROLIEiJ_G0030050-9988.235Mus_caroli
ENSG00000175581MRPL4810089.091ENSMUSG00000030706Mrpl4810086.726Mus_musculus
ENSG00000175581MRPL489988.393MGP_PahariEiJ_G0013272Mrpl489981.517Mus_pahari
ENSG00000175581MRPL4810089.091MGP_SPRETEiJ_G0031161Mrpl489982.464Mus_spretus
ENSG00000175581MRPL4810090.909ENSMPUG00000019110-9982.464Mustela_putorius_furo
ENSG00000175581MRPL4810089.091ENSMLUG00000012083MRPL489983.412Myotis_lucifugus
ENSG00000175581MRPL4810090.909ENSNGAG00000006402Mrpl489985.782Nannospalax_galili
ENSG00000175581MRPL485355.000ENSNBRG00000011494mrpl485950.877Neolamprologus_brichardi
ENSG00000175581MRPL487851.136ENSNBRG00000005766-9151.136Neolamprologus_brichardi
ENSG00000175581MRPL489999.107ENSNLEG00000017097MRPL489997.156Nomascus_leucogenys
ENSG00000175581MRPL489990.741ENSNLEG00000028993-9981.517Nomascus_leucogenys
ENSG00000175581MRPL4810089.381ENSOPRG00000010373MRPL489989.189Ochotona_princeps
ENSG00000175581MRPL4810086.726ENSODEG00000005929MRPL4810086.726Octodon_degus
ENSG00000175581MRPL4810057.692ENSONIG00000012529mrpl489145.000Oreochromis_niloticus
ENSG00000175581MRPL4810081.416ENSOANG00000013906-10064.486Ornithorhynchus_anatinus
ENSG00000175581MRPL489991.964ENSOCUG00000009302-8790.230Oryctolagus_cuniculus
ENSG00000175581MRPL4810092.727ENSOCUG00000025915-9988.152Oryctolagus_cuniculus
ENSG00000175581MRPL4810069.231ENSORLG00000008682mrpl489445.918Oryzias_latipes
ENSG00000175581MRPL4810069.231ENSORLG00020004801MRPL489445.918Oryzias_latipes_hni
ENSG00000175581MRPL4810069.231ENSORLG00015021506mrpl489446.429Oryzias_latipes_hsok
ENSG00000175581MRPL4810069.231ENSOMEG00000019182mrpl489946.009Oryzias_melastigma
ENSG00000175581MRPL4810092.308ENSOGAG00000004771-9993.056Otolemur_garnettii
ENSG00000175581MRPL4810092.308ENSOGAG00000027978-9989.573Otolemur_garnettii
ENSG00000175581MRPL4810091.150ENSOARG00000008118MRPL489986.730Ovis_aries
ENSG00000175581MRPL4810099.115ENSPPAG00000039192MRPL4810099.057Pan_paniscus
ENSG00000175581MRPL4810094.545ENSPPRG00000008470MRPL4810093.805Panthera_pardus
ENSG00000175581MRPL4810094.545ENSPTIG00000020025MRPL4810093.805Panthera_tigris_altaica
ENSG00000175581MRPL4810099.115ENSPTRG00000004049MRPL4810099.057Pan_troglodytes
ENSG00000175581MRPL4810088.462ENSPANG00000030690-9981.043Papio_anubis
ENSG00000175581MRPL489998.214ENSPANG00000019128MRPL489997.630Papio_anubis
ENSG00000175581MRPL489958.929ENSPKIG00000024210mrpl489858.929Paramormyrops_kingsleyae
ENSG00000175581MRPL489968.750ENSPSIG00000014248MRPL489860.513Pelodiscus_sinensis
ENSG00000175581MRPL4810061.538ENSPMGG00000004557mrpl488152.800Periophthalmus_magnuspinnatus
ENSG00000175581MRPL4810087.611ENSPEMG00000021769Mrpl4810087.611Peromyscus_maniculatus_bairdii
ENSG00000175581MRPL489977.679ENSPCIG00000021813MRPL488172.038Phascolarctos_cinereus
ENSG00000175581MRPL4810061.538ENSPFOG00000014883mrpl489247.980Poecilia_formosa
ENSG00000175581MRPL4810061.538ENSPLAG00000004162mrpl488850.568Poecilia_latipinna
ENSG00000175581MRPL4810061.538ENSPMEG00000015944mrpl488949.474Poecilia_mexicana
ENSG00000175581MRPL4810057.692ENSPREG00000020427mrpl489645.283Poecilia_reticulata
ENSG00000175581MRPL4810099.115ENSPPYG00000003664-8196.698Pongo_abelii
ENSG00000175581MRPL4810090.265ENSPCOG00000020385-9787.255Propithecus_coquereli
ENSG00000175581MRPL4810092.727ENSPCOG00000025047-9989.573Propithecus_coquereli
ENSG00000175581MRPL4810084.615ENSPVAG00000006653MRPL489973.545Pteropus_vampyrus
ENSG00000175581MRPL489954.464ENSPNYG00000020778mrpl489145.918Pundamilia_nyererei
ENSG00000175581MRPL4810065.385ENSPNAG00000027512mrpl488650.962Pygocentrus_nattereri
ENSG00000175581MRPL4810089.091ENSRNOG00000018042Mrpl489981.991Rattus_norvegicus
ENSG00000175581MRPL4810092.308ENSRBIG00000030623-9981.991Rhinopithecus_bieti
ENSG00000175581MRPL4810092.308ENSRROG00000040924-9982.464Rhinopithecus_roxellana
ENSG00000175581MRPL489997.321ENSRROG00000043160MRPL489994.286Rhinopithecus_roxellana
ENSG00000175581MRPL489282.692ENSSBOG00000028791-10082.692Saimiri_boliviensis_boliviensis
ENSG00000175581MRPL489979.464ENSSHAG00000014091MRPL489974.713Sarcophilus_harrisii
ENSG00000175581MRPL4810050.442ENSSFOG00015002052mrpl488348.352Scleropages_formosus
ENSG00000175581MRPL4810055.752ENSSMAG00000015781mrpl489846.190Scophthalmus_maximus
ENSG00000175581MRPL489952.679ENSSDUG00000014937mrpl489145.128Seriola_dumerili
ENSG00000175581MRPL489953.571ENSSLDG00000008081mrpl489145.641Seriola_lalandi_dorsalis
ENSG00000175581MRPL489991.071ENSSARG00000003792MRPL486786.705Sorex_araneus
ENSG00000175581MRPL4810065.385ENSSPUG00000017310MRPL489957.547Sphenodon_punctatus
ENSG00000175581MRPL4810053.846ENSSPAG00000012763mrpl489943.500Stegastes_partitus
ENSG00000175581MRPL489990.179ENSSSCG00000014829MRPL489983.886Sus_scrofa
ENSG00000175581MRPL485368.333ENSTGUG00000016409-9863.043Taeniopygia_guttata
ENSG00000175581MRPL489970.536ENSTGUG00000013469-9864.327Taeniopygia_guttata
ENSG00000175581MRPL4810069.231ENSTRUG00000005273mrpl489648.980Takifugu_rubripes
ENSG00000175581MRPL4810069.231ENSTNIG00000007416mrpl489849.756Tetraodon_nigroviridis
ENSG00000175581MRPL4810093.805ENSTTRG00000005403MRPL489988.360Tursiops_truncatus
ENSG00000175581MRPL487993.258ENSUAMG00000017695-7393.258Ursus_americanus
ENSG00000175581MRPL4810094.545ENSUMAG00000010317MRPL489988.626Ursus_maritimus
ENSG00000175581MRPL4810091.150ENSVPAG00000004657MRPL489986.772Vicugna_pacos
ENSG00000175581MRPL4810092.920ENSVVUG00000024543-10092.920Vulpes_vulpes
ENSG00000175581MRPL4810073.077ENSXETG00000023199mrpl489954.106Xenopus_tropicalis
ENSG00000175581MRPL4810065.385ENSXCOG00000004111mrpl489047.179Xiphophorus_couchianus
ENSG00000175581MRPL4810065.385ENSXMAG00000011518mrpl488948.947Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005515protein binding20601428.IPIFunction
GO:0005739mitochondrion28892042.IDAComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005761mitochondrial ribosome21873635.IBAComponent
GO:0005761mitochondrial ribosome20601428.IDAComponent
GO:0005762mitochondrial large ribosomal subunit25278503.28892042.IDAComponent
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess

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