EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000175582 (Gene tree)
Gene ID
5870
Gene Symbol
RAB6A
Alias
RAB6
Full Name
RAB6A, member RAS oncogene family
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
85,519 bases
Position
chr11:73,675,638-73,761,156
Accession
9786
RBP type
canonical RBP
Summary
This gene encodes a member of the RAB family, which belongs to the small GTPase superfamily. GTPases of the RAB family bind to various effectors to regulate the targeting and fusion of transport carriers to acceptor compartments. This protein is located at the Golgi apparatus, which regulates trafficking in both a retrograde (from early endosomes and Golgi to the endoplasmic reticulum) and an anterograde (from the Golgi to the plasma membrane) directions. Myosin II is an effector of this protein in these processes. This protein is also involved in assembly of human cytomegalovirus (HCMV) by interacting with the cellular protein Bicaudal D1, which interacts with the HCMV virion tegument protein, pp150. Multiple alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Aug 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000336850MMR_HSR1PF01926.230.0001911
ENSP00000311449MMR_HSR1PF01926.230.0002211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
29990369Identification and annotation of newly conserved microRNAs and their targets in wheat (Triticum aestivum L.).PLoS One2018 Jul 10Achakzai HKdoi: 10.1371/journal.pone.0200033
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000310653RAB6A-2013389-ENSP00000311449208 (aa)-P20340
ENST00000536566RAB6A-2041267-ENSP0000043786387 (aa)-F5GX61
ENST00000541795RAB6A-2081812--- (aa)--
ENST00000540771RAB6A-206699-ENSP0000043884271 (aa)-F5H3K7
ENST00000541973RAB6A-2091104-ENSP00000443782175 (aa)-P20340
ENST00000400470RAB6A-203522--- (aa)--
ENST00000336083RAB6A-2023085-ENSP00000336850208 (aa)-P20340
ENST00000545625RAB6A-210447-ENSP0000044046987 (aa)-F5GX61
ENST00000537446RAB6A-205447-ENSP0000044347087 (aa)-F5GX61
ENST00000541588RAB6A-207758-ENSP00000445350104 (aa)-P20340
Gene Model
Click here to download ENSG00000175582's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000175582Intelligence Tests3.3046900E-005-
ENSG00000175582Child Development Disorders, Pervasive4.8296000E-005-
ENSG00000175582Energy Intake4E-623251661
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000175582's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000175582RAB6A9796.610ENSAPOG00000005731rab6a10088.626Acanthochromis_polyacanthus
ENSG00000175582RAB6A100100.000ENSAMEG00000017285RAB6A8299.519Ailuropoda_melanoleuca
ENSG00000175582RAB6A10096.571ENSACIG00000014605rab6a10096.154Amphilophus_citrinellus
ENSG00000175582RAB6A10096.000ENSAOCG00000012277-10095.192Amphiprion_ocellaris
ENSG00000175582RAB6A9796.610ENSATEG00000015992rab4110088.626Anabas_testudineus
ENSG00000175582RAB6A10097.143ENSATEG00000012459-10096.635Anabas_testudineus
ENSG00000175582RAB6A9796.610ENSACAG00000015304-9589.756Anolis_carolinensis
ENSG00000175582RAB6A100100.000ENSANAG00000036364RAB6A10099.519Aotus_nancymaae
ENSG00000175582RAB6A9796.610ENSACLG00000019423rab4110088.626Astatotilapia_calliptera
ENSG00000175582RAB6A10098.558ENSAMXG00000032547rab6a10098.558Astyanax_mexicanus
ENSG00000175582RAB6A9982.439ENSAMXG00000033216rab4110080.569Astyanax_mexicanus
ENSG00000175582RAB6A100100.000ENSBTAG00000000025RAB6A10099.519Bos_taurus
ENSG00000175582RAB6A10076.136WBGene00004269rab-6.19976.699Caenorhabditis_elegans
ENSG00000175582RAB6A100100.000ENSCJAG00000039039RAB6A10099.519Callithrix_jacchus
ENSG00000175582RAB6A10099.429ENSCAFG00000028870RAB6A10099.038Canis_familiaris
ENSG00000175582RAB6A10099.519ENSCAFG00020002206RAB6A10099.519Canis_lupus_dingo
ENSG00000175582RAB6A100100.000ENSCHIG00000023957RAB6A10099.519Capra_hircus
ENSG00000175582RAB6A10098.857ENSTSYG00000013951RAB6A10098.558Carlito_syrichta
ENSG00000175582RAB6A100100.000ENSCATG00000012428RAB6A10099.519Cercocebus_atys
ENSG00000175582RAB6A10099.429ENSCLAG00000015536RAB6A10099.038Chinchilla_lanigera
ENSG00000175582RAB6A10099.519ENSCSAG00000004062RAB6A10099.519Chlorocebus_sabaeus
ENSG00000175582RAB6A10097.674ENSCHOG00000000992RAB6A10088.462Choloepus_hoffmanni
ENSG00000175582RAB6A100100.000ENSCPBG00000000041RAB6A10099.519Chrysemys_picta_bellii
ENSG00000175582RAB6A9696.552ENSCING00000002960-9987.864Ciona_intestinalis
ENSG00000175582RAB6A9696.552ENSCSAVG00000009128-9987.864Ciona_savignyi
ENSG00000175582RAB6A100100.000ENSCANG00000029094RAB6A10099.519Colobus_angolensis_palliatus
ENSG00000175582RAB6A100100.000ENSCGRG00001018153Rab6a10099.519Cricetulus_griseus_chok1gshd
ENSG00000175582RAB6A9796.610ENSCSEG00000004941rab4110089.100Cynoglossus_semilaevis
ENSG00000175582RAB6A10097.143ENSCVAG00000022249rab6a10096.635Cyprinodon_variegatus
ENSG00000175582RAB6A9796.610ENSCVAG00000001618rab4110088.152Cyprinodon_variegatus
ENSG00000175582RAB6A10098.857ENSDARG00000103714rab6a10098.077Danio_rerio
ENSG00000175582RAB6A9796.610ENSDARG00000029885rab4110088.152Danio_rerio
ENSG00000175582RAB6A10099.429ENSDNOG00000042746RAB6A10099.038Dasypus_novemcinctus
ENSG00000175582RAB6A10099.429ENSDORG00000027784Rab6a10099.038Dipodomys_ordii
ENSG00000175582RAB6A9895.000FBgn0015797Rab69987.440Drosophila_melanogaster
ENSG00000175582RAB6A7996.774ENSETEG00000009412-10072.596Echinops_telfairi
ENSG00000175582RAB6A10099.519ENSEASG00005017944RAB6A10099.519Equus_asinus_asinus
ENSG00000175582RAB6A100100.000ENSECAG00000022694-10099.519Equus_caballus
ENSG00000175582RAB6A10098.286ENSELUG00000008876rab6a10097.596Esox_lucius
ENSG00000175582RAB6A100100.000ENSFCAG00000023834RAB6A10099.519Felis_catus
ENSG00000175582RAB6A10099.429ENSFALG00000008011RAB6A10099.038Ficedula_albicollis
ENSG00000175582RAB6A10099.429ENSFDAG00000010948-10099.038Fukomys_damarensis
ENSG00000175582RAB6A9796.610ENSGMOG00000004095rab4110088.626Gadus_morhua
ENSG00000175582RAB6A9895.000ENSGALG00000026278-9892.233Gallus_gallus
ENSG00000175582RAB6A10099.429ENSGALG00000017320RAB6A10099.038Gallus_gallus
ENSG00000175582RAB6A10097.143ENSGAFG00000006356rab6a10096.635Gambusia_affinis
ENSG00000175582RAB6A9796.610ENSGAFG00000019872rab4110087.678Gambusia_affinis
ENSG00000175582RAB6A9796.610ENSGACG00000017153rab4110088.626Gasterosteus_aculeatus
ENSG00000175582RAB6A10097.143ENSGACG00000020356rab6a10096.635Gasterosteus_aculeatus
ENSG00000175582RAB6A100100.000ENSGAGG00000021701RAB6A10099.519Gopherus_agassizii
ENSG00000175582RAB6A100100.000ENSGGOG00000010610RAB6A100100.000Gorilla_gorilla
ENSG00000175582RAB6A10097.143ENSHBUG00000000890rab6a10096.635Haplochromis_burtoni
ENSG00000175582RAB6A10099.429ENSHGLG00000008829-10099.038Heterocephalus_glaber_female
ENSG00000175582RAB6A10098.286ENSHGLG00100014550-10098.077Heterocephalus_glaber_male
ENSG00000175582RAB6A10097.674ENSHCOG00000006550-10095.673Hippocampus_comes
ENSG00000175582RAB6A9796.610ENSHCOG00000004404rab4110088.626Hippocampus_comes
ENSG00000175582RAB6A9796.610ENSIPUG00000019382rab4110088.152Ictalurus_punctatus
ENSG00000175582RAB6A10097.674ENSIPUG00000021740rab6a10096.154Ictalurus_punctatus
ENSG00000175582RAB6A100100.000ENSSTOG00000023497RAB6A10099.519Ictidomys_tridecemlineatus
ENSG00000175582RAB6A8098.795ENSKMAG00000013146-8698.795Kryptolebias_marmoratus
ENSG00000175582RAB6A10095.349ENSLBEG00000003748rab6a10094.712Labrus_bergylta
ENSG00000175582RAB6A10097.674ENSLACG00000005168RAB6A10094.712Latimeria_chalumnae
ENSG00000175582RAB6A9796.610ENSLACG00000013980rab419792.683Latimeria_chalumnae
ENSG00000175582RAB6A10093.750ENSLOCG00000015191rab419989.524Lepisosteus_oculatus
ENSG00000175582RAB6A100100.000ENSMFAG00000041027RAB6A10099.519Macaca_fascicularis
ENSG00000175582RAB6A100100.000ENSMNEG00000029216RAB6A10099.519Macaca_nemestrina
ENSG00000175582RAB6A100100.000ENSMLEG00000038771RAB6A10099.519Mandrillus_leucophaeus
ENSG00000175582RAB6A9796.610ENSMAMG00000020859rab4110087.678Mastacembelus_armatus
ENSG00000175582RAB6A10097.143ENSMAMG00000012488rab6a10096.635Mastacembelus_armatus
ENSG00000175582RAB6A10097.143ENSMZEG00005023181rab6a10096.635Maylandia_zebra
ENSG00000175582RAB6A100100.000ENSMICG00000031565RAB6A10099.519Microcebus_murinus
ENSG00000175582RAB6A100100.000ENSMOCG00000014387Rab6a10099.519Microtus_ochrogaster
ENSG00000175582RAB6A9497.500ENSMMOG00000001992rab418989.744Mola_mola
ENSG00000175582RAB6A10095.349ENSMMOG00000016209rab6a10091.827Mola_mola
ENSG00000175582RAB6A10098.077ENSMODG00000007600RAB6A10098.077Monodelphis_domestica
ENSG00000175582RAB6A10096.571ENSMALG00000020364-10096.154Monopterus_albus
ENSG00000175582RAB6A9796.610ENSMALG00000010549rab4110088.626Monopterus_albus
ENSG00000175582RAB6A10099.429MGP_CAROLIEiJ_G0030051Rab6a10099.038Mus_caroli
ENSG00000175582RAB6A10099.429ENSMUSG00000030704Rab6a10099.038Mus_musculus
ENSG00000175582RAB6A10099.038MGP_PahariEiJ_G0013273Rab6a10099.038Mus_pahari
ENSG00000175582RAB6A10099.429MGP_SPRETEiJ_G0031162Rab6a10099.038Mus_spretus
ENSG00000175582RAB6A10099.519ENSMPUG00000009724RAB6A10099.519Mustela_putorius_furo
ENSG00000175582RAB6A10098.558ENSNGAG00000014566Rab6a10098.558Nannospalax_galili
ENSG00000175582RAB6A9796.610ENSNBRG00000022702rab419789.756Neolamprologus_brichardi
ENSG00000175582RAB6A10097.143ENSNBRG00000016716rab6a10096.635Neolamprologus_brichardi
ENSG00000175582RAB6A100100.000ENSNLEG00000017098RAB6A10099.519Nomascus_leucogenys
ENSG00000175582RAB6A10098.077ENSMEUG00000010026RAB6A10098.077Notamacropus_eugenii
ENSG00000175582RAB6A9497.674ENSOPRG00000010355RAB6A10099.471Ochotona_princeps
ENSG00000175582RAB6A10099.429ENSODEG00000005942RAB6A10099.038Octodon_degus
ENSG00000175582RAB6A10097.143ENSONIG00000004394rab6a10096.635Oreochromis_niloticus
ENSG00000175582RAB6A100100.000ENSOCUG00000009297RAB6A10099.519Oryctolagus_cuniculus
ENSG00000175582RAB6A10095.161ENSORLG00000000937-10086.977Oryzias_latipes
ENSG00000175582RAB6A10096.000ENSORLG00000026197rab6a10095.673Oryzias_latipes
ENSG00000175582RAB6A9796.610ENSORLG00020000604rab4110087.678Oryzias_latipes_hni
ENSG00000175582RAB6A10096.000ENSORLG00020001816rab6a10095.673Oryzias_latipes_hni
ENSG00000175582RAB6A10096.000ENSORLG00015006162rab6a10095.673Oryzias_latipes_hsok
ENSG00000175582RAB6A10096.000ENSOMEG00000004379-10095.673Oryzias_melastigma
ENSG00000175582RAB6A10098.857ENSOGAG00000027043RAB6A10098.558Otolemur_garnettii
ENSG00000175582RAB6A10099.519ENSOARG00000007994RAB6A10099.519Ovis_aries
ENSG00000175582RAB6A100100.000ENSPPAG00000011436RAB6A100100.000Pan_paniscus
ENSG00000175582RAB6A100100.000ENSPPRG00000009543RAB6A10099.519Panthera_pardus
ENSG00000175582RAB6A100100.000ENSPTRG00000044137RAB6A100100.000Pan_troglodytes
ENSG00000175582RAB6A100100.000ENSPANG00000014356RAB6A10099.519Papio_anubis
ENSG00000175582RAB6A9793.220ENSPKIG00000018584rab419788.780Paramormyrops_kingsleyae
ENSG00000175582RAB6A10097.674ENSPMGG00000010067-10095.673Periophthalmus_magnuspinnatus
ENSG00000175582RAB6A10097.143ENSPFOG00000019509rab6a10096.635Poecilia_formosa
ENSG00000175582RAB6A10097.143ENSPLAG00000019570rab6a10096.635Poecilia_latipinna
ENSG00000175582RAB6A9796.610ENSPLAG00000000376rab419789.756Poecilia_latipinna
ENSG00000175582RAB6A10097.143ENSPMEG00000003369rab6a10096.635Poecilia_mexicana
ENSG00000175582RAB6A9796.610ENSPMEG00000014170rab4110088.626Poecilia_mexicana
ENSG00000175582RAB6A10097.143ENSPREG00000021505rab6a10096.635Poecilia_reticulata
ENSG00000175582RAB6A100100.000ENSPPYG00000003663RAB6A100100.000Pongo_abelii
ENSG00000175582RAB6A9297.674ENSPCAG00000006752RAB6A10099.465Procavia_capensis
ENSG00000175582RAB6A100100.000ENSPCOG00000021991RAB6A10099.519Propithecus_coquereli
ENSG00000175582RAB6A10099.519ENSPVAG00000017342RAB6A10099.519Pteropus_vampyrus
ENSG00000175582RAB6A9796.610ENSPNYG00000013288rab4110088.626Pundamilia_nyererei
ENSG00000175582RAB6A10097.143ENSPNYG00000020556rab6a10096.635Pundamilia_nyererei
ENSG00000175582RAB6A9796.610ENSPNAG00000021737rab419790.732Pygocentrus_nattereri
ENSG00000175582RAB6A10099.429ENSRNOG00000018176Rab6a10099.038Rattus_norvegicus
ENSG00000175582RAB6A100100.000ENSRBIG00000030390RAB6A10099.519Rhinopithecus_bieti
ENSG00000175582RAB6A100100.000ENSRROG00000042103RAB6A10099.519Rhinopithecus_roxellana
ENSG00000175582RAB6A10097.674ENSSBOG00000028389RAB6A10083.654Saimiri_boliviensis_boliviensis
ENSG00000175582RAB6A10098.286ENSSFOG00015002077rab6a10097.596Scleropages_formosus
ENSG00000175582RAB6A9796.610ENSSFOG00015004941rab419588.780Scleropages_formosus
ENSG00000175582RAB6A9796.610ENSSMAG00000015774rab4110088.626Scophthalmus_maximus
ENSG00000175582RAB6A10095.349ENSSMAG00000017205-10091.827Scophthalmus_maximus
ENSG00000175582RAB6A10097.714ENSSDUG00000013496-10097.115Seriola_dumerili
ENSG00000175582RAB6A10097.714ENSSLDG00000015289-10097.115Seriola_lalandi_dorsalis
ENSG00000175582RAB6A9796.610ENSSLDG00000022282rab4110088.626Seriola_lalandi_dorsalis
ENSG00000175582RAB6A9895.000ENSSPUG00000001533-9891.748Sphenodon_punctatus
ENSG00000175582RAB6A10098.077ENSSPUG00000017301RAB6A10098.077Sphenodon_punctatus
ENSG00000175582RAB6A10095.349ENSSPAG00000001067-10093.750Stegastes_partitus
ENSG00000175582RAB6A9796.610ENSSPAG00000006001rab4110088.626Stegastes_partitus
ENSG00000175582RAB6A100100.000ENSSSCG00000014828RAB6A10099.519Sus_scrofa
ENSG00000175582RAB6A10099.038ENSTGUG00000013470RAB6A10099.038Taeniopygia_guttata
ENSG00000175582RAB6A10097.674ENSTRUG00000023252rab6a10096.154Takifugu_rubripes
ENSG00000175582RAB6A9796.610ENSTRUG00000009223rab419789.756Takifugu_rubripes
ENSG00000175582RAB6A10099.038ENSTTRG00000005374RAB6A10099.038Tursiops_truncatus
ENSG00000175582RAB6A10094.712ENSUMAG00000010248RAB6A10094.712Ursus_maritimus
ENSG00000175582RAB6A10099.519ENSVVUG00000024550RAB6A10099.519Vulpes_vulpes
ENSG00000175582RAB6A10097.674ENSXETG00000031363-10079.327Xenopus_tropicalis
ENSG00000175582RAB6A9497.674ENSXETG00000023200rab6a10096.825Xenopus_tropicalis
ENSG00000175582RAB6A10097.143ENSXCOG00000006259rab6a10096.635Xiphophorus_couchianus
ENSG00000175582RAB6A10097.143ENSXMAG00000011903rab6a10096.635Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000139Golgi membrane25962623.IDAComponent
GO:0000139Golgi membrane-TASComponent
GO:0003924GTPase activity21873635.IBAFunction
GO:0003924GTPase activity16332443.18243103.IDAFunction
GO:0005515protein binding12391317.15878329.16189514.16902405.18243103.19141279.20386726.20643351.21378754.23091056.23664119.25107275.25416956.25962623.IPIFunction
GO:0005525GTP binding16332443.18243103.19141279.IDAFunction
GO:0005789endoplasmic reticulum membrane-TASComponent
GO:0005794Golgi apparatus21873635.IBAComponent
GO:0005794Golgi apparatus11121396.15229288.17562788.18243103.19141279.23091056.IDAComponent
GO:0005802trans-Golgi network12447383.IDAComponent
GO:0005829cytosol12447383.IDAComponent
GO:0005829cytosol-TASComponent
GO:0005886plasma membrane-TASComponent
GO:0006886intracellular protein transport21873635.IBAProcess
GO:0006890retrograde vesicle-mediated transport, Golgi to ER21873635.IBAProcess
GO:0006890retrograde vesicle-mediated transport, Golgi to ER25962623.IMPProcess
GO:0006890retrograde vesicle-mediated transport, Golgi to ER12447383.TASProcess
GO:0006891intra-Golgi vesicle-mediated transport21873635.IBAProcess
GO:0016020membrane12447383.IDAComponent
GO:0016032viral process-IEAProcess
GO:0018125peptidyl-cysteine methylation11121396.IDAProcess
GO:0019882antigen processing and presentation19717423.IMPProcess
GO:0019904protein domain specific binding12447383.IPIFunction
GO:0030667secretory granule membrane-TASComponent
GO:0031410cytoplasmic vesicle12447383.IDAComponent
GO:0031489myosin V binding24006491.IPIFunction
GO:0032482Rab protein signal transduction21873635.IBAProcess
GO:0032588trans-Golgi network membrane-TASComponent
GO:0034067protein localization to Golgi apparatus12447383.18243103.IDAProcess
GO:0034498early endosome to Golgi transport17562788.IMPProcess
GO:0042147retrograde transport, endosome to Golgi21873635.IBAProcess
GO:0043312neutrophil degranulation-TASProcess
GO:0070062extracellular exosome20458337.HDAComponent
GO:0070381endosome to plasma membrane transport vesicle24859005.IDAComponent
GO:0072385minus-end-directed organelle transport along microtubule12447383.TASProcess

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