EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Phenotypes

GWAS

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000176476 (Gene tree)
Gene ID: 112869
Gene Symbol: SGF29
Alias: FLJ32446|TDRD29|CCDC101
Full Name: SAGA complex associated factor 29
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 37,876 bases
Position: chr16:28,553,915-28,591,790
Accession: 25156
RBP type: canonical RBP
Summary: CCDC101 is a subunit of 2 histone acetyltransferase complexes: the ADA2A (TADA2A; MIM 602276)-containing (ATAC) complex and the SPT3 (SUPT3H; MIM 602947)-TAF9 (MIM 600822)-GCN5 (KAT2A; MIM 602301)/PCAF (KAT2B; MIM 602303) acetylase (STAGA) complex. Both of these complexes contain either GCN5 or PCAF, which are paralogous acetyltransferases (Wang et al., 2008 [PubMed 18838386]).[supplied by OMIM, Apr 2010]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000316114	DUF1325	PF07039.11	1.6e-39	1	1
ENSP00000454730	DUF1325	PF07039.11	1.3e-22	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000567564	SGF29-206	788	-	ENSP00000455370	132 (aa)	-	H3BPL5
ENST00000564682	SGF29-203	764	-	-	- (aa)	-	-
ENST00000567447	SGF29-205	726	-	-	- (aa)	-	-
ENST00000317058	SGF29-201	1153	XM_017022894	ENSP00000316114	293 (aa)	XP_016878383	Q96ES7
ENST00000565945	SGF29-204	535	-	-	- (aa)	-	-
ENST00000569581	SGF29-207	738	-	-	- (aa)	-	-
ENST00000564023	SGF29-202	354	-	ENSP00000454730	90 (aa)	-	H3BN84

Gene Model

Click here to download ENSG00000176476's gene model file

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000176476	Prostate-Specific Antigen	1.82e-005	-
ENSG00000176476	Prostate-Specific Antigen	5.658e-005	-
ENSG00000176476	Prostate-Specific Antigen	6.571e-005	-
ENSG00000176476	Prostate-Specific Antigen	1.82e-005	-
ENSG00000176476	Prostate-Specific Antigen	6.067e-005	-
ENSG00000176476	Pulmonary Disease, Chronic Obstructive	7E-10	28166215

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000176476	rs480400	16	28563294	A	Intelligence (MTAG)	29326435	[0.017-0.028] unit increase	0.022714678	EFO_0004337
ENSG00000176476	rs17707300	16	28582026	C	Chronic obstructive pulmonary disease	28166215	[1.06-1.13]	1.1	EFO_0000341
ENSG00000176476	rs151231	16	28571528	A	General cognitive ability	29844566	z-score increase	7.307	EFO_0004337
ENSG00000176476	rs497523	16	28566610	T	General cognitive ability	29844566	z-score decrease	5.493	EFO_0004337
ENSG00000176476	rs193628	16	28570821	T	Intelligence	29942086	z-score increase	7.65	EFO_0004337
ENSG00000176476	rs7193402	16	28574806	?	Eczema	30595370			HP_0000964

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000176476's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000176476	SGF29	99	91.379	ENSAPOG00000007072	sgf29	100	91.379	Acanthochromis_polyacanthus
ENSG00000176476	SGF29	100	96.246	ENSAMEG00000015388	SGF29	100	96.246	Ailuropoda_melanoleuca
ENSG00000176476	SGF29	85	90.361	ENSACIG00000024432	sgf29	100	90.361	Amphilophus_citrinellus
ENSG00000176476	SGF29	99	91.379	ENSAOCG00000013494	sgf29	100	91.379	Amphiprion_ocellaris
ENSG00000176476	SGF29	86	90.476	ENSAPEG00000007284	sgf29	93	90.476	Amphiprion_percula
ENSG00000176476	SGF29	99	91.379	ENSATEG00000017566	sgf29	100	91.379	Anabas_testudineus
ENSG00000176476	SGF29	100	96.246	ENSACAG00000006595	SGF29	100	96.246	Anolis_carolinensis
ENSG00000176476	SGF29	100	100.000	ENSANAG00000037641	-	100	100.000	Aotus_nancymaae
ENSG00000176476	SGF29	99	85.274	ENSANAG00000023337	-	93	85.274	Aotus_nancymaae
ENSG00000176476	SGF29	100	79.181	ENSANAG00000032813	-	96	87.295	Aotus_nancymaae
ENSG00000176476	SGF29	99	90.000	ENSACLG00000016730	sgf29	100	90.000	Astatotilapia_calliptera
ENSG00000176476	SGF29	100	90.301	ENSAMXG00000003395	sgf29	100	90.301	Astyanax_mexicanus
ENSG00000176476	SGF29	100	98.976	ENSBTAG00000016883	SGF29	100	98.976	Bos_taurus
ENSG00000176476	SGF29	93	39.831	WBGene00021205	Y17G9B.8	89	37.991	Caenorhabditis_elegans
ENSG00000176476	SGF29	100	100.000	ENSCJAG00000006577	SGF29	100	100.000	Callithrix_jacchus
ENSG00000176476	SGF29	96	98.936	ENSCAFG00000017127	SGF29	92	98.936	Canis_familiaris
ENSG00000176476	SGF29	96	98.936	ENSCAFG00020017597	SGF29	92	98.936	Canis_lupus_dingo
ENSG00000176476	SGF29	100	98.976	ENSCHIG00000015325	SGF29	100	98.976	Capra_hircus
ENSG00000176476	SGF29	84	96.748	ENSTSYG00000003314	-	97	96.748	Carlito_syrichta
ENSG00000176476	SGF29	100	99.317	ENSTSYG00000025878	-	100	99.317	Carlito_syrichta
ENSG00000176476	SGF29	83	85.830	ENSCAPG00000000732	SGF29	96	85.830	Cavia_aperea
ENSG00000176476	SGF29	100	97.952	ENSCPOG00000027037	SGF29	100	97.952	Cavia_porcellus
ENSG00000176476	SGF29	99	75.342	ENSCCAG00000027313	-	66	75.342	Cebus_capucinus
ENSG00000176476	SGF29	100	100.000	ENSCCAG00000027359	-	100	100.000	Cebus_capucinus
ENSG00000176476	SGF29	100	100.000	ENSCATG00000034020	SGF29	100	100.000	Cercocebus_atys
ENSG00000176476	SGF29	100	98.635	ENSCLAG00000011510	SGF29	100	98.635	Chinchilla_lanigera
ENSG00000176476	SGF29	100	93.645	ENSCSAG00000006259	SGF29	100	93.645	Chlorocebus_sabaeus
ENSG00000176476	SGF29	87	64.706	ENSCHOG00000013831	-	100	64.706	Choloepus_hoffmanni
ENSG00000176476	SGF29	100	97.611	ENSCPBG00000012638	SGF29	85	97.611	Chrysemys_picta_bellii
ENSG00000176476	SGF29	99	61.938	ENSCING00000012953	-	99	61.938	Ciona_intestinalis
ENSG00000176476	SGF29	72	57.143	ENSCSAVG00000007328	-	87	57.143	Ciona_savignyi
ENSG00000176476	SGF29	85	99.598	ENSCANG00000039654	SGF29	100	99.598	Colobus_angolensis_palliatus
ENSG00000176476	SGF29	100	98.976	ENSCGRG00001016730	-	100	98.976	Cricetulus_griseus_chok1gshd
ENSG00000176476	SGF29	100	93.537	ENSCGRG00001014941	-	100	93.537	Cricetulus_griseus_chok1gshd
ENSG00000176476	SGF29	100	98.635	ENSCGRG00000003808	Sgf29	100	98.635	Cricetulus_griseus_crigri
ENSG00000176476	SGF29	82	90.041	ENSCSEG00000010575	sgf29	86	90.083	Cynoglossus_semilaevis
ENSG00000176476	SGF29	99	91.379	ENSCVAG00000014381	sgf29	100	91.379	Cyprinodon_variegatus
ENSG00000176476	SGF29	100	91.126	ENSDARG00000002339	sgf29	100	91.126	Danio_rerio
ENSG00000176476	SGF29	100	98.976	ENSDNOG00000048338	SGF29	99	98.976	Dasypus_novemcinctus
ENSG00000176476	SGF29	100	98.635	ENSDORG00000007002	Sgf29	100	98.635	Dipodomys_ordii
ENSG00000176476	SGF29	98	49.306	FBgn0050390	Sgf29	94	49.306	Drosophila_melanogaster
ENSG00000176476	SGF29	99	80.822	ENSEBUG00000008631	sgf29	98	80.822	Eptatretus_burgeri
ENSG00000176476	SGF29	92	98.885	ENSEASG00005014751	SGF29	91	98.885	Equus_asinus_asinus
ENSG00000176476	SGF29	100	98.976	ENSECAG00000011445	SGF29	95	98.976	Equus_caballus
ENSG00000176476	SGF29	91	98.881	ENSEEUG00000008521	SGF29	100	98.881	Erinaceus_europaeus
ENSG00000176476	SGF29	99	91.379	ENSELUG00000023888	sgf29	100	91.379	Esox_lucius
ENSG00000176476	SGF29	100	98.976	ENSFCAG00000012297	SGF29	100	98.976	Felis_catus
ENSG00000176476	SGF29	100	98.294	ENSFDAG00000012928	SGF29	100	98.294	Fukomys_damarensis
ENSG00000176476	SGF29	86	90.476	ENSFHEG00000022427	sgf29	93	90.476	Fundulus_heteroclitus
ENSG00000176476	SGF29	99	89.347	ENSGMOG00000000328	sgf29	100	89.347	Gadus_morhua
ENSG00000176476	SGF29	100	94.539	ENSGALG00000020590	SGF29	100	94.539	Gallus_gallus
ENSG00000176476	SGF29	99	91.379	ENSGAFG00000020626	sgf29	100	91.379	Gambusia_affinis
ENSG00000176476	SGF29	99	88.276	ENSGACG00000015001	sgf29	100	88.276	Gasterosteus_aculeatus
ENSG00000176476	SGF29	100	97.270	ENSGAGG00000012655	SGF29	100	97.270	Gopherus_agassizii
ENSG00000176476	SGF29	100	99.317	ENSGGOG00000000807	-	100	99.317	Gorilla_gorilla
ENSG00000176476	SGF29	76	77.778	ENSHBUG00000013677	sgf29	91	77.778	Haplochromis_burtoni
ENSG00000176476	SGF29	100	98.635	ENSHGLG00000014468	SGF29	100	98.635	Heterocephalus_glaber_female
ENSG00000176476	SGF29	100	98.635	ENSHGLG00100000132	SGF29	100	98.635	Heterocephalus_glaber_male
ENSG00000176476	SGF29	99	91.379	ENSHCOG00000002018	sgf29	100	91.379	Hippocampus_comes
ENSG00000176476	SGF29	100	91.468	ENSIPUG00000001851	sgf29	100	91.468	Ictalurus_punctatus
ENSG00000176476	SGF29	100	98.976	ENSSTOG00000013258	SGF29	100	98.976	Ictidomys_tridecemlineatus
ENSG00000176476	SGF29	100	98.976	ENSJJAG00000009013	Sgf29	100	98.976	Jaculus_jaculus
ENSG00000176476	SGF29	99	89.310	ENSKMAG00000004341	sgf29	99	89.310	Kryptolebias_marmoratus
ENSG00000176476	SGF29	85	90.400	ENSLBEG00000006754	sgf29	100	90.400	Labrus_bergylta
ENSG00000176476	SGF29	77	95.652	ENSLACG00000005336	SGF29	99	80.658	Latimeria_chalumnae
ENSG00000176476	SGF29	100	98.976	ENSLAFG00000028439	SGF29	100	98.976	Loxodonta_africana
ENSG00000176476	SGF29	100	100.000	ENSMFAG00000038040	SGF29	100	100.000	Macaca_fascicularis
ENSG00000176476	SGF29	100	100.000	ENSMMUG00000011370	SGF29	100	100.000	Macaca_mulatta
ENSG00000176476	SGF29	100	99.659	ENSMNEG00000043534	SGF29	100	99.659	Macaca_nemestrina
ENSG00000176476	SGF29	100	100.000	ENSMLEG00000031039	SGF29	100	100.000	Mandrillus_leucophaeus
ENSG00000176476	SGF29	99	91.034	ENSMAMG00000017907	sgf29	100	91.034	Mastacembelus_armatus
ENSG00000176476	SGF29	99	90.000	ENSMZEG00005001194	sgf29	100	90.000	Maylandia_zebra
ENSG00000176476	SGF29	99	90.000	ENSMZEG00005002947	sgf29	100	90.000	Maylandia_zebra
ENSG00000176476	SGF29	100	94.539	ENSMGAG00000012201	SGF29	100	94.539	Meleagris_gallopavo
ENSG00000176476	SGF29	100	98.976	ENSMAUG00000011063	Sgf29	100	98.976	Mesocricetus_auratus
ENSG00000176476	SGF29	100	99.317	ENSMICG00000009973	SGF29	100	99.317	Microcebus_murinus
ENSG00000176476	SGF29	100	98.976	ENSMOCG00000021358	Sgf29	100	98.976	Microtus_ochrogaster
ENSG00000176476	SGF29	85	88.538	ENSMMOG00000012706	sgf29	100	88.538	Mola_mola
ENSG00000176476	SGF29	100	96.928	ENSMODG00000015642	SGF29	100	96.928	Monodelphis_domestica
ENSG00000176476	SGF29	99	91.379	ENSMALG00000000231	sgf29	96	91.379	Monopterus_albus
ENSG00000176476	SGF29	100	98.294	MGP_CAROLIEiJ_G0030456	Sgf29	100	98.294	Mus_caroli
ENSG00000176476	SGF29	100	98.294	ENSMUSG00000030714	Sgf29	100	98.294	Mus_musculus
ENSG00000176476	SGF29	100	98.294	MGP_PahariEiJ_G0013666	Sgf29	100	98.294	Mus_pahari
ENSG00000176476	SGF29	100	98.294	MGP_SPRETEiJ_G0031570	Sgf29	100	98.294	Mus_spretus
ENSG00000176476	SGF29	100	98.976	ENSMPUG00000012669	SGF29	100	98.976	Mustela_putorius_furo
ENSG00000176476	SGF29	100	98.976	ENSMLUG00000022554	SGF29	100	98.976	Myotis_lucifugus
ENSG00000176476	SGF29	100	98.635	ENSNGAG00000022634	Sgf29	100	98.635	Nannospalax_galili
ENSG00000176476	SGF29	85	89.960	ENSNBRG00000020775	sgf29	100	89.960	Neolamprologus_brichardi
ENSG00000176476	SGF29	99	89.041	ENSNLEG00000001604	SGF29	99	89.041	Nomascus_leucogenys
ENSG00000176476	SGF29	76	98.649	ENSMEUG00000006221	SGF29	76	98.649	Notamacropus_eugenii
ENSG00000176476	SGF29	100	98.635	ENSOPRG00000009316	SGF29	100	98.635	Ochotona_princeps
ENSG00000176476	SGF29	100	97.952	ENSODEG00000013702	SGF29	100	97.952	Octodon_degus
ENSG00000176476	SGF29	99	90.034	ENSONIG00000009377	sgf29	100	90.034	Oreochromis_niloticus
ENSG00000176476	SGF29	68	97.475	ENSOANG00000009696	SGF29	100	97.475	Ornithorhynchus_anatinus
ENSG00000176476	SGF29	99	71.545	ENSOCUG00000021684	-	100	76.639	Oryctolagus_cuniculus
ENSG00000176476	SGF29	92	98.519	ENSOCUG00000025361	-	100	98.519	Oryctolagus_cuniculus
ENSG00000176476	SGF29	99	90.345	ENSORLG00000027873	sgf29	100	90.345	Oryzias_latipes
ENSG00000176476	SGF29	99	90.345	ENSORLG00020020976	-	100	90.345	Oryzias_latipes_hni
ENSG00000176476	SGF29	99	90.345	ENSORLG00015011795	sgf29	100	90.345	Oryzias_latipes_hsok
ENSG00000176476	SGF29	99	90.345	ENSOMEG00000020118	sgf29	100	90.345	Oryzias_melastigma
ENSG00000176476	SGF29	100	65.306	ENSOGAG00000034571	-	100	65.306	Otolemur_garnettii
ENSG00000176476	SGF29	100	92.150	ENSOGAG00000015794	-	100	92.150	Otolemur_garnettii
ENSG00000176476	SGF29	100	98.976	ENSOARG00000003226	SGF29	100	98.976	Ovis_aries
ENSG00000176476	SGF29	96	100.000	ENSPPAG00000039380	SGF29	99	98.354	Pan_paniscus
ENSG00000176476	SGF29	100	98.976	ENSPPRG00000006831	SGF29	100	98.976	Panthera_pardus
ENSG00000176476	SGF29	100	98.976	ENSPTIG00000014381	SGF29	100	98.976	Panthera_tigris_altaica
ENSG00000176476	SGF29	77	100.000	ENSPTRG00000007925	SGF29	100	74.582	Pan_troglodytes
ENSG00000176476	SGF29	100	100.000	ENSPANG00000019684	SGF29	100	100.000	Papio_anubis
ENSG00000176476	SGF29	100	87.713	ENSPKIG00000018503	sgf29	100	87.713	Paramormyrops_kingsleyae
ENSG00000176476	SGF29	99	85.172	ENSPMGG00000006683	sgf29	99	85.172	Periophthalmus_magnuspinnatus
ENSG00000176476	SGF29	100	97.270	ENSPCIG00000025200	SGF29	100	97.270	Phascolarctos_cinereus
ENSG00000176476	SGF29	99	91.724	ENSPFOG00000010035	sgf29	99	91.724	Poecilia_formosa
ENSG00000176476	SGF29	99	91.724	ENSPLAG00000000559	sgf29	100	91.724	Poecilia_latipinna
ENSG00000176476	SGF29	99	91.724	ENSPMEG00000007026	sgf29	100	91.724	Poecilia_mexicana
ENSG00000176476	SGF29	99	92.069	ENSPREG00000011868	sgf29	100	92.069	Poecilia_reticulata
ENSG00000176476	SGF29	100	100.000	ENSPPYG00000007233	SGF29	100	100.000	Pongo_abelii
ENSG00000176476	SGF29	100	99.317	ENSPCOG00000028233	SGF29	100	99.317	Propithecus_coquereli
ENSG00000176476	SGF29	86	89.286	ENSPNYG00000012353	sgf29	100	89.960	Pundamilia_nyererei
ENSG00000176476	SGF29	85	91.566	ENSPNAG00000014651	sgf29	100	91.566	Pygocentrus_nattereri
ENSG00000176476	SGF29	100	98.635	ENSRNOG00000019245	Sgf29	100	98.635	Rattus_norvegicus
ENSG00000176476	SGF29	100	100.000	ENSRBIG00000041003	SGF29	100	100.000	Rhinopithecus_bieti
ENSG00000176476	SGF29	100	100.000	ENSRROG00000044894	SGF29	100	100.000	Rhinopithecus_roxellana
ENSG00000176476	SGF29	91	100.000	ENSSBOG00000008004	SGF29	100	100.000	Saimiri_boliviensis_boliviensis
ENSG00000176476	SGF29	100	97.270	ENSSHAG00000011279	-	100	97.270	Sarcophilus_harrisii
ENSG00000176476	SGF29	81	65.823	ENSSHAG00000002930	-	100	65.823	Sarcophilus_harrisii
ENSG00000176476	SGF29	100	87.372	ENSSFOG00015001254	sgf29	100	87.372	Scleropages_formosus
ENSG00000176476	SGF29	99	91.724	ENSSMAG00000016613	sgf29	100	91.724	Scophthalmus_maximus
ENSG00000176476	SGF29	99	91.379	ENSSDUG00000005977	sgf29	100	91.379	Seriola_dumerili
ENSG00000176476	SGF29	99	91.379	ENSSLDG00000012446	sgf29	100	91.379	Seriola_lalandi_dorsalis
ENSG00000176476	SGF29	100	97.270	ENSSPUG00000010121	SGF29	100	97.270	Sphenodon_punctatus
ENSG00000176476	SGF29	99	91.379	ENSSPAG00000018994	sgf29	100	91.379	Stegastes_partitus
ENSG00000176476	SGF29	100	98.976	ENSSSCG00000022778	SGF29	100	98.976	Sus_scrofa
ENSG00000176476	SGF29	99	91.034	ENSTNIG00000001984	sgf29	99	91.034	Tetraodon_nigroviridis
ENSG00000176476	SGF29	96	90.780	ENSTNIG00000006496	SGF29	100	90.780	Tetraodon_nigroviridis
ENSG00000176476	SGF29	97	97.544	ENSUAMG00000010172	SGF29	85	98.885	Ursus_americanus
ENSG00000176476	SGF29	88	98.062	ENSUMAG00000010966	SGF29	79	98.062	Ursus_maritimus
ENSG00000176476	SGF29	100	95.563	ENSXETG00000033185	sgf29	100	95.563	Xenopus_tropicalis
ENSG00000176476	SGF29	99	91.409	ENSXCOG00000011501	sgf29	100	91.409	Xiphophorus_couchianus
ENSG00000176476	SGF29	99	91.724	ENSXMAG00000010932	sgf29	100	91.724	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000124	SAGA complex	21873635.	IBA	Component
GO:0001135	RNA polymerase II transcription regulator recruiting activity	21873635.	IBA	Function
GO:0005515	protein binding	16189514.21685874.25416956.25609649.26496610.	IPI	Function
GO:0005671	Ada2/Gcn5/Ada3 transcription activator complex	21873635.	IBA	Component
GO:0005671	Ada2/Gcn5/Ada3 transcription activator complex	18838386.	IDA	Component
GO:0016573	histone acetylation	23894581.	IDA	Process
GO:0019899	enzyme binding	-	IEA	Function
GO:0035064	methylated histone binding	21873635.	IBA	Function
GO:0035064	methylated histone binding	20850016.26421618.	IDA	Function
GO:0043966	histone H3 acetylation	21873635.	IBA	Process
GO:0043966	histone H3 acetylation	18838386.	IDA	Process
GO:0047485	protein N-terminus binding	-	IEA	Function
GO:0051123	RNA polymerase II preinitiation complex assembly	-	IEA	Process
GO:0070461	SAGA-type complex	18838386.20850016.	IDA	Component
GO:0071169	establishment of protein localization to chromatin	20850016.	TAS	Process