EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000177200 (Gene tree)
Gene ID
80205
Gene Symbol
CHD9
Alias
FLJ12178|KIAA0308|BC022889
Full Name
chromodomain helicase DNA binding protein 9
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
274,153 bases
Position
chr16:53,054,998-53,329,150
Accession
25701
RBP type
canonical RBP
Summary
CHD9 (Chromodomain Helicase DNA Binding Protein 9) is a Protein Coding gene. Among its related pathways are Developmental Biology and Metabolism. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and helicase activity. An important paralog of this gene is CHD7.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000457355ResIIIPF04851.153.7e-0611
ENSP00000381522ResIIIPF04851.151.9e-0511
ENSP00000396345ResIIIPF04851.151.9e-0511
ENSP00000455307ResIIIPF04851.151.9e-0511
ENSP00000457466ResIIIPF04851.151.9e-0511
ENSP00000478361BRKPF07533.163.9e-3112
ENSP00000478361BRKPF07533.163.9e-3122
ENSP00000457355BRKPF07533.162.8e-3012
ENSP00000457355BRKPF07533.162.8e-3022
ENSP00000455307BRKPF07533.164.2e-3012
ENSP00000455307BRKPF07533.164.2e-3022
ENSP00000457466BRKPF07533.164.2e-3012
ENSP00000457466BRKPF07533.164.2e-3022
ENSP00000381522BRKPF07533.164.2e-3012
ENSP00000381522BRKPF07533.164.2e-3022
ENSP00000396345BRKPF07533.164.2e-3012
ENSP00000396345BRKPF07533.164.2e-3022
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000564600CHD9-211539-ENSP00000462685122 (aa)-J3KSW5
ENST00000564641CHD9-212589-ENSP00000462008113 (aa)-J3KRH9
ENST00000562785CHD9-205359-ENSP0000046015591 (aa)-I3L340
ENST00000565442CHD9-215703-ENSP00000456415125 (aa)-H3BRU9
ENST00000562791CHD9-206242--- (aa)--
ENST00000447540CHD9-20311509XM_005256168ENSP000003963452897 (aa)XP_005256225Q3L8U1
ENST00000563410CHD9-208488-ENSP0000045792953 (aa)-H3BV31
ENST00000564845CHD9-21311504XM_017023722ENSP000004553072881 (aa)XP_016879211Q3L8U1
ENST00000569225CHD9-2191862--- (aa)--
ENST00000565119CHD9-214824--- (aa)--
ENST00000562806CHD9-207400--- (aa)--
ENST00000566029CHD9-21813110-ENSP000004574662881 (aa)-Q3L8U1
ENST00000564582CHD9-210968--- (aa)--
ENST00000219084CHD9-2018739--- (aa)--
ENST00000564255CHD9-2092896--- (aa)--
ENST00000561869CHD9-204720--- (aa)--
ENST00000398510CHD9-20211337XM_005256169ENSP000003815222897 (aa)XP_005256226Q3L8U1
ENST00000569794CHD9-220485--- (aa)--
ENST00000565803CHD9-2169565XM_005256176ENSP000004573552424 (aa)XP_005256233H3BTW3
ENST00000615216CHD9-22110603-ENSP00000478361963 (aa)-A0A087WU44
ENST00000565832CHD9-2172169-ENSP00000456793632 (aa)-H3BSP3
Gene Model
Click here to download ENSG00000177200's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000177200Hemoglobin A, Glycosylated3.9E-0519875614
ENSG00000177200Platelet Function Tests1.4882200E-005-
ENSG00000177200Fibrinogen3E-1128107422
ENSG00000177200S-(3-hydroxypropyl)cysteine N-acetate2E-626053186
ENSG00000177200Smoking2E-626053186
ENSG00000177200Fibrinogen1E-1023969696
ENSG00000177200Fibrinogen9E-1426561523
ENSG00000177200Fibrinogen8E-1128107422
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000177200rs72042301653158419TFibrinogen23969696[0.006-0.01] unit increase0.008EFO_0004623
ENSG00000177200rs118595171653147335TFibrinogen levels26561523NR unit decrease0.0074EFO_0004623
ENSG00000177200rs727976421653069322GAnkle injury289573841.7643EFO_1002021
ENSG00000177200rs7704145351653206360GMonocyte percentage of white cells27863252[0.02-0.037] unit decrease0.02827739EFO_0007989
ENSG00000177200rs125980491653282942?Fibrinogen levels28107422unit increase0.0074EFO_0004623
ENSG00000177200rs64995501653308542?Fibrinogen levels28107422unit increase0.007EFO_0004623
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000177200's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000177200CHD99769.830ENSAPOG00000023034chd99968.894Acanthochromis_polyacanthus
ENSG00000177200CHD9100100.000ENSAMEG00000016232CHD910096.383Ailuropoda_melanoleuca
ENSG00000177200CHD99868.852ENSACIG00000004097chd97361.327Amphilophus_citrinellus
ENSG00000177200CHD99670.899ENSAOCG00000005487chd99969.181Amphiprion_ocellaris
ENSG00000177200CHD99671.142ENSAPEG00000009859chd99968.750Amphiprion_percula
ENSG00000177200CHD99177.358ENSATEG00000002748chd99962.320Anabas_testudineus
ENSG00000177200CHD910098.113ENSAPLG00000002826CHD97486.016Anas_platyrhynchos
ENSG00000177200CHD910092.453ENSACAG00000016150CHD99881.685Anolis_carolinensis
ENSG00000177200CHD9100100.000ENSANAG00000015630CHD910098.901Aotus_nancymaae
ENSG00000177200CHD99177.778ENSACLG00000016899chd99961.687Astatotilapia_calliptera
ENSG00000177200CHD99870.877ENSAMXG00000005652chd99968.727Astyanax_mexicanus
ENSG00000177200CHD999100.000ENSBTAG00000002287CHD910095.633Bos_taurus
ENSG00000177200CHD9100100.000ENSCJAG00000001573CHD910099.267Callithrix_jacchus
ENSG00000177200CHD9100100.000ENSCAFG00000009699CHD910096.416Canis_familiaris
ENSG00000177200CHD9100100.000ENSCAFG00020002879CHD910098.901Canis_lupus_dingo
ENSG00000177200CHD9100100.000ENSTSYG00000007693CHD910097.802Carlito_syrichta
ENSG00000177200CHD98296.774ENSCAPG00000011604CHD98179.597Cavia_aperea
ENSG00000177200CHD9100100.000ENSCPOG00000036544CHD910091.761Cavia_porcellus
ENSG00000177200CHD9100100.000ENSCCAG00000036178CHD910098.535Cebus_capucinus
ENSG00000177200CHD9100100.000ENSCATG00000036753CHD910099.267Cercocebus_atys
ENSG00000177200CHD9100100.000ENSCLAG00000007137CHD910097.597Chinchilla_lanigera
ENSG00000177200CHD9100100.000ENSCSAG00000005311CHD910098.966Chlorocebus_sabaeus
ENSG00000177200CHD910094.400ENSCHOG00000003935CHD97698.077Choloepus_hoffmanni
ENSG00000177200CHD910098.113ENSCPBG00000012459CHD99991.835Chrysemys_picta_bellii
ENSG00000177200CHD9100100.000ENSCANG00000030349CHD910099.267Colobus_angolensis_palliatus
ENSG00000177200CHD910098.113ENSCGRG00001016150Chd99991.939Cricetulus_griseus_chok1gshd
ENSG00000177200CHD910098.113ENSCGRG00000012850Chd910096.339Cricetulus_griseus_crigri
ENSG00000177200CHD99767.167ENSCSEG00000009209chd99966.083Cynoglossus_semilaevis
ENSG00000177200CHD99570.687ENSCVAG00000016195chd98468.854Cyprinodon_variegatus
ENSG00000177200CHD99769.366ENSDARG00000074498chd99967.620Danio_rerio
ENSG00000177200CHD910095.971ENSDNOG00000006045CHD910095.153Dasypus_novemcinctus
ENSG00000177200CHD910094.505ENSDORG00000008523-10094.150Dipodomys_ordii
ENSG00000177200CHD9100100.000ENSETEG00000009565CHD99497.895Echinops_telfairi
ENSG00000177200CHD910098.113ENSEASG00005014832CHD910096.244Equus_asinus_asinus
ENSG00000177200CHD910098.535ENSECAG00000011505CHD910096.176Equus_caballus
ENSG00000177200CHD9100100.000ENSEEUG00000014515CHD98697.790Erinaceus_europaeus
ENSG00000177200CHD99867.894ENSELUG00000006031chd99274.229Esox_lucius
ENSG00000177200CHD9100100.000ENSFCAG00000022534CHD910098.535Felis_catus
ENSG00000177200CHD99891.575ENSFALG00000013276CHD99988.164Ficedula_albicollis
ENSG00000177200CHD9100100.000ENSFDAG00000021037CHD910094.898Fukomys_damarensis
ENSG00000177200CHD99570.883ENSFHEG00000006068chd99670.335Fundulus_heteroclitus
ENSG00000177200CHD98474.038ENSGMOG00000006040chd98376.934Gadus_morhua
ENSG00000177200CHD910098.113ENSGALG00000039178CHD99885.910Gallus_gallus
ENSG00000177200CHD99768.623ENSGAFG00000010014chd99967.498Gambusia_affinis
ENSG00000177200CHD99767.310ENSGACG00000016694chd96874.802Gasterosteus_aculeatus
ENSG00000177200CHD99987.603ENSGAGG00000001048-9887.912Gopherus_agassizii
ENSG00000177200CHD9100100.000ENSGGOG00000014816CHD910099.634Gorilla_gorilla
ENSG00000177200CHD99177.778ENSHBUG00000023322chd99868.697Haplochromis_burtoni
ENSG00000177200CHD9100100.000ENSHGLG00000014938CHD910098.055Heterocephalus_glaber_female
ENSG00000177200CHD910093.600ENSHGLG00100001011-10098.055Heterocephalus_glaber_male
ENSG00000177200CHD99994.215ENSHGLG00100007620-10093.773Heterocephalus_glaber_male
ENSG00000177200CHD99767.349ENSHCOG00000000937chd99768.176Hippocampus_comes
ENSG00000177200CHD99772.263ENSIPUG00000016448chd99773.358Ictalurus_punctatus
ENSG00000177200CHD9100100.000ENSSTOG00000022273CHD910098.398Ictidomys_tridecemlineatus
ENSG00000177200CHD910097.070ENSJJAG00000015741-10094.592Jaculus_jaculus
ENSG00000177200CHD99769.726ENSKMAG00000016784chd99669.753Kryptolebias_marmoratus
ENSG00000177200CHD99768.558ENSLBEG00000012077chd99967.946Labrus_bergylta
ENSG00000177200CHD910081.132ENSLACG00000005557CHD98275.465Latimeria_chalumnae
ENSG00000177200CHD99875.357ENSLOCG00000007225chd99974.013Lepisosteus_oculatus
ENSG00000177200CHD9100100.000ENSLAFG00000015374CHD910095.040Loxodonta_africana
ENSG00000177200CHD9100100.000ENSMFAG00000041354CHD910099.267Macaca_fascicularis
ENSG00000177200CHD9100100.000ENSMMUG00000016310CHD910099.267Macaca_mulatta
ENSG00000177200CHD9100100.000ENSMNEG00000031494CHD910099.120Macaca_nemestrina
ENSG00000177200CHD9100100.000ENSMLEG00000043219CHD910099.267Mandrillus_leucophaeus
ENSG00000177200CHD99570.329ENSMAMG00000003909chd99960.467Mastacembelus_armatus
ENSG00000177200CHD99670.887ENSMZEG00005006581chd99868.857Maylandia_zebra
ENSG00000177200CHD99892.308ENSMGAG00000004642CHD97280.903Meleagris_gallopavo
ENSG00000177200CHD910088.800ENSMAUG00000011087-10095.881Mesocricetus_auratus
ENSG00000177200CHD99992.562ENSMAUG00000000526-9896.400Mesocricetus_auratus
ENSG00000177200CHD9100100.000ENSMICG00000016679CHD910097.070Microcebus_murinus
ENSG00000177200CHD910089.600ENSMOCG00000018583-10096.339Microtus_ochrogaster
ENSG00000177200CHD99992.562ENSMOCG00000010691-9895.971Microtus_ochrogaster
ENSG00000177200CHD99180.000ENSMMOG00000016406chd97463.091Mola_mola
ENSG00000177200CHD99884.965ENSMODG00000013142-9992.380Monodelphis_domestica
ENSG00000177200CHD99971.074ENSMALG00000013306chd97362.477Monopterus_albus
ENSG00000177200CHD9100100.000MGP_CAROLIEiJ_G0031364Chd99990.455Mus_caroli
ENSG00000177200CHD9100100.000ENSMUSG00000056608Chd910095.538Mus_musculus
ENSG00000177200CHD9100100.000MGP_PahariEiJ_G0022964Chd99988.280Mus_pahari
ENSG00000177200CHD9100100.000MGP_SPRETEiJ_G0032483Chd99990.101Mus_spretus
ENSG00000177200CHD9100100.000ENSMPUG00000003285CHD910096.174Mustela_putorius_furo
ENSG00000177200CHD910098.901ENSMLUG00000004456CHD910094.379Myotis_lucifugus
ENSG00000177200CHD910091.909ENSNGAG00000015820-10096.703Nannospalax_galili
ENSG00000177200CHD910092.000ENSNGAG00000019957-10096.911Nannospalax_galili
ENSG00000177200CHD99177.778ENSNBRG00000009423chd99868.591Neolamprologus_brichardi
ENSG00000177200CHD9100100.000ENSNLEG00000001026CHD910099.348Nomascus_leucogenys
ENSG00000177200CHD910094.340ENSMEUG00000008222-8496.078Notamacropus_eugenii
ENSG00000177200CHD910098.113ENSOPRG00000011168CHD98597.429Ochotona_princeps
ENSG00000177200CHD9100100.000ENSODEG00000004466CHD99994.203Octodon_degus
ENSG00000177200CHD99671.567ENSONIG00000002816chd99970.016Oreochromis_niloticus
ENSG00000177200CHD910093.455ENSOANG00000013401CHD910086.811Ornithorhynchus_anatinus
ENSG00000177200CHD910097.239ENSOCUG00000001016CHD99997.239Oryctolagus_cuniculus
ENSG00000177200CHD99768.311ENSORLG00000013810chd99468.896Oryzias_latipes
ENSG00000177200CHD99176.699ENSORLG00020020665chd97562.995Oryzias_latipes_hni
ENSG00000177200CHD99175.728ENSORLG00015019126chd99668.874Oryzias_latipes_hsok
ENSG00000177200CHD99164.583ENSOMEG00000015978chd99962.820Oryzias_melastigma
ENSG00000177200CHD9100100.000ENSOGAG00000002110CHD910095.382Otolemur_garnettii
ENSG00000177200CHD999100.000ENSOARG00000017664CHD910095.318Ovis_aries
ENSG00000177200CHD910099.634ENSPPAG00000039388-10098.630Pan_paniscus
ENSG00000177200CHD9100100.000ENSPPRG00000004801CHD910098.168Panthera_pardus
ENSG00000177200CHD9100100.000ENSPTIG00000021854CHD910094.967Panthera_tigris_altaica
ENSG00000177200CHD9100100.000ENSPTRG00000008113CHD910099.827Pan_troglodytes
ENSG00000177200CHD9100100.000ENSPANG00000019307CHD910099.267Papio_anubis
ENSG00000177200CHD99469.930ENSPKIG00000025401-7162.824Paramormyrops_kingsleyae
ENSG00000177200CHD99176.415ENSPKIG00000021876chd96976.859Paramormyrops_kingsleyae
ENSG00000177200CHD910098.113ENSPSIG00000008099CHD99984.865Pelodiscus_sinensis
ENSG00000177200CHD98482.474ENSPMGG00000021802chd910072.857Periophthalmus_magnuspinnatus
ENSG00000177200CHD99992.562ENSPEMG00000021464-9897.070Peromyscus_maniculatus_bairdii
ENSG00000177200CHD97157.635ENSPMAG00000006035-7267.923Petromyzon_marinus
ENSG00000177200CHD9100100.000ENSPCIG00000017215CHD99988.618Phascolarctos_cinereus
ENSG00000177200CHD99569.900ENSPFOG00000015839chd99760.878Poecilia_formosa
ENSG00000177200CHD99769.415ENSPLAG00000011118chd99669.457Poecilia_latipinna
ENSG00000177200CHD99570.586ENSPMEG00000015106chd99661.030Poecilia_mexicana
ENSG00000177200CHD99571.150ENSPREG00000006473chd99668.824Poecilia_reticulata
ENSG00000177200CHD9100100.000ENSPPYG00000007348CHD910099.482Pongo_abelii
ENSG00000177200CHD9100100.000ENSPCAG00000007564CHD98696.415Procavia_capensis
ENSG00000177200CHD9100100.000ENSPCOG00000028433CHD910098.168Propithecus_coquereli
ENSG00000177200CHD910098.113ENSPVAG00000015617CHD99893.032Pteropus_vampyrus
ENSG00000177200CHD99177.778ENSPNYG00000010947chd99868.857Pundamilia_nyererei
ENSG00000177200CHD99177.670ENSPNAG00000024141chd99969.096Pygocentrus_nattereri
ENSG00000177200CHD9100100.000ENSRNOG00000049302Chd910090.476Rattus_norvegicus
ENSG00000177200CHD910099.267ENSRBIG00000035553CHD910099.267Rhinopithecus_bieti
ENSG00000177200CHD910099.267ENSRROG00000033278CHD910099.267Rhinopithecus_roxellana
ENSG00000177200CHD9100100.000ENSSBOG00000030240CHD910098.535Saimiri_boliviensis_boliviensis
ENSG00000177200CHD910096.226ENSSHAG00000002719CHD910088.235Sarcophilus_harrisii
ENSG00000177200CHD99670.455ENSSFOG00015001327chd96975.119Scleropages_formosus
ENSG00000177200CHD99671.815ENSSFOG00015020209chd99970.226Scleropages_formosus
ENSG00000177200CHD99768.306ENSSMAG00000008953chd99967.768Scophthalmus_maximus
ENSG00000177200CHD99769.075ENSSDUG00000006139chd99968.070Seriola_dumerili
ENSG00000177200CHD99176.699ENSSLDG00000017818chd99968.532Seriola_lalandi_dorsalis
ENSG00000177200CHD9100100.000ENSSARG00000010632CHD97197.688Sorex_araneus
ENSG00000177200CHD99985.124ENSSPUG00000017465-9891.209Sphenodon_punctatus
ENSG00000177200CHD99670.505ENSSPAG00000021649chd99868.383Stegastes_partitus
ENSG00000177200CHD910098.113ENSTGUG00000007476CHD910085.889Taeniopygia_guttata
ENSG00000177200CHD99181.308ENSTRUG00000009125chd99961.399Takifugu_rubripes
ENSG00000177200CHD98381.915ENSTNIG00000003825chd95681.951Tetraodon_nigroviridis
ENSG00000177200CHD910097.600ENSTBEG00000016052-8196.847Tupaia_belangeri
ENSG00000177200CHD9100100.000ENSTTRG00000012674CHD99095.247Tursiops_truncatus
ENSG00000177200CHD910098.901ENSUAMG00000022706CHD910098.901Ursus_americanus
ENSG00000177200CHD9100100.000ENSUMAG00000004043CHD99998.401Ursus_maritimus
ENSG00000177200CHD910098.113ENSVPAG00000001374CHD99795.199Vicugna_pacos
ENSG00000177200CHD9100100.000ENSVVUG00000019435CHD910096.485Vulpes_vulpes
ENSG00000177200CHD910083.019ENSXETG00000000349chd99676.835Xenopus_tropicalis
ENSG00000177200CHD99571.188ENSXCOG00000012997chd99570.229Xiphophorus_couchianus
ENSG00000177200CHD99769.215ENSXMAG00000016192chd99670.640Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003677DNA binding-IEAFunction
GO:0004386helicase activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005654nucleoplasm-TASComponent
GO:0005737cytoplasm-IEAComponent
GO:0006325chromatin organization-IEAProcess
GO:0019216regulation of lipid metabolic process-TASProcess

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