EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000178105 (Gene tree)
Gene ID
1662
Gene Symbol
DDX10
Alias
HRH-J8|Dbp4
Full Name
DEAD-box helicase 10
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
275,906 bases
Position
chr11:108,665,025-108,940,930
Accession
2735
RBP type
canonical RBP
Summary
DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein, and it may be involved in ribosome assembly. Fusion of this gene and the nucleoporin gene, NUP98, by inversion 11 (p15q22) chromosome translocation is found in the patients with de novo or therapy-related myeloid malignancies. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000432032ResIIIPF04851.151e-0911
ENSP00000314348ResIIIPF04851.151.1e-0911
ENSP00000432032DEADPF00270.293.1e-4811
ENSP00000314348DEADPF00270.293.4e-4811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
20339440Effects of the NUP98-DDX10 oncogene on primary human CD34+ cells: role of a conserved helicase motif.Leukemia2010 MayYassin ERdoi: 10.1038/leu.2010.42
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000322536DDX10-2013264-ENSP00000314348875 (aa)-Q13206
ENST00000533198DDX10-205372--- (aa)--
ENST00000534221DDX10-206870--- (aa)--
ENST00000534439DDX10-207438--- (aa)--
ENST00000526794DDX10-2036707-ENSP00000432032835 (aa)-E9PIF2
ENST00000534774DDX10-208518--- (aa)--
ENST00000524979DDX10-202794--- (aa)--
ENST00000648124DDX10-2093400-ENSP00000497432679 (aa)-UPI0005D007AD
ENST00000530116DDX10-204435--- (aa)--
Gene Model
Click here to download ENSG00000178105's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000178105Electrocardiography3.54044697553923E-617903306
ENSG00000178105Platelet Function Tests1.6103600E-005-
ENSG00000178105Platelet Function Tests1.2547000E-005-
ENSG00000178105Platelet Function Tests6.7004836E-006-
ENSG00000178105Platelet Function Tests1.2183600E-005-
ENSG00000178105Platelet Function Tests1.2570100E-005-
ENSG00000178105Platelet Function Tests1.9482100E-005-
ENSG00000178105Platelet Function Tests2.0829000E-005-
ENSG00000178105Platelet Function Tests1.5435400E-005-
ENSG00000178105Platelet Function Tests1.3478800E-005-
ENSG00000178105Platelet Function Tests3.7084400E-005-
ENSG00000178105Platelet Function Tests3.9316300E-005-
ENSG00000178105Platelet Function Tests1.7338700E-005-
ENSG00000178105Platelet Function Tests1.6006300E-005-
ENSG00000178105Platelet Function Tests2.6291000E-005-
ENSG00000178105Platelet Function Tests6.7414093E-006-
ENSG00000178105Platelet Function Tests6.7414093E-006-
ENSG00000178105Platelet Function Tests2.6816077E-006-
ENSG00000178105Platelet Function Tests4.0519182E-006-
ENSG00000178105Platelet Function Tests3.3703816E-006-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000178105's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000178105DDX105433.333ENSG00000198231DDX425133.069
ENSG00000178105DDX105134.174ENSG00000105671DDX496937.349
ENSG00000178105DDX105330.518ENSG00000136271DDX567436.842
ENSG00000178105DDX105139.437ENSG00000089737DDX246331.613
ENSG00000178105DDX105633.168ENSG00000183258DDX417737.594
ENSG00000178105DDX105436.533ENSG00000213782DDX478036.533
ENSG00000178105DDX105531.579ENSG00000067048DDX3Y5931.658
ENSG00000178105DDX106231.222ENSG00000107625DDX505931.448
ENSG00000178105DDX106439.823ENSG00000111364DDX558743.713
ENSG00000178105DDX106234.195ENSG00000125485DDX316734.195
ENSG00000178105DDX105335.027ENSG00000165732DDX215135.027
ENSG00000178105DDX105632.987ENSG00000100201DDX177545.238
ENSG00000178105DDX106445.662ENSG00000088205DDX189944.444
ENSG00000178105DDX105531.658ENSG00000215301DDX3X8031.282
ENSG00000178105DDX105141.538ENSG00000079785DDX15441.538
ENSG00000178105DDX105035.043ENSG00000108654DDX57455.882
ENSG00000178105DDX105232.865ENSG00000123064DDX549340.609
ENSG00000178105DDX105432.891ENSG00000152670DDX46732.732
ENSG00000178105DDX105133.811ENSG00000110367DDX67034.097
ENSG00000178105DDX105634.961ENSG00000124228DDX278936.585
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000178105DDX107477.579ENSAPOG00000009242ddx109860.820Acanthochromis_polyacanthus
ENSG00000178105DDX1010088.838ENSAMEG00000009232DDX1010089.728Ailuropoda_melanoleuca
ENSG00000178105DDX108177.183ENSACIG00000012927ddx109960.686Amphilophus_citrinellus
ENSG00000178105DDX107477.778ENSAOCG00000021917ddx106176.493Amphiprion_ocellaris
ENSG00000178105DDX107477.778ENSAPEG00000022230ddx106473.503Amphiprion_percula
ENSG00000178105DDX107475.889ENSATEG00000007227ddx109758.728Anabas_testudineus
ENSG00000178105DDX108869.035ENSAPLG00000011942DDX109969.519Anas_platyrhynchos
ENSG00000178105DDX109371.317ENSACAG00000005173DDX109869.705Anolis_carolinensis
ENSG00000178105DDX1010093.792ENSANAG00000020864DDX1010094.018Aotus_nancymaae
ENSG00000178105DDX107675.869ENSACLG00000003559ddx109959.864Astatotilapia_calliptera
ENSG00000178105DDX107475.000ENSAMXG00000006135ddx109858.158Astyanax_mexicanus
ENSG00000178105DDX1010088.182ENSBTAG00000002382DDX1010088.864Bos_taurus
ENSG00000178105DDX106653.880WBGene00021277Y23H5B.66353.043Caenorhabditis_elegans
ENSG00000178105DDX1010093.501ENSCJAG00000010281DDX1010093.501Callithrix_jacchus
ENSG00000178105DDX1010087.727ENSCAFG00000014324DDX1010088.295Canis_familiaris
ENSG00000178105DDX1010087.727ENSCAFG00020007058DDX1010088.295Canis_lupus_dingo
ENSG00000178105DDX1010088.422ENSCHIG00000015147DDX1010088.763Capra_hircus
ENSG00000178105DDX1010085.438ENSTSYG00000003184DDX1010085.210Carlito_syrichta
ENSG00000178105DDX1010083.049ENSCPOG00000000865DDX1010083.732Cavia_porcellus
ENSG00000178105DDX1010094.005ENSCCAG00000024209DDX1010094.457Cebus_capucinus
ENSG00000178105DDX1010075.314ENSCATG00000040297-10075.543Cercocebus_atys
ENSG00000178105DDX1010096.343ENSCATG00000028487DDX1010096.343Cercocebus_atys
ENSG00000178105DDX1010088.965ENSCLAG00000013463DDX1010089.192Chinchilla_lanigera
ENSG00000178105DDX109498.639ENSCSAG00000002948DDX109698.639Chlorocebus_sabaeus
ENSG00000178105DDX109385.995ENSCHOG00000001537DDX109385.995Choloepus_hoffmanni
ENSG00000178105DDX108377.719ENSCPBG00000021681DDX109966.230Chrysemys_picta_bellii
ENSG00000178105DDX107556.795ENSCING00000021618-8952.984Ciona_intestinalis
ENSG00000178105DDX106760.706ENSCSAVG00000003023-8956.189Ciona_savignyi
ENSG00000178105DDX1010072.229ENSCANG00000038108-9582.736Colobus_angolensis_palliatus
ENSG00000178105DDX1010096.914ENSCANG00000027716DDX1010096.914Colobus_angolensis_palliatus
ENSG00000178105DDX1010084.580ENSCGRG00001007099Ddx1010084.694Cricetulus_griseus_chok1gshd
ENSG00000178105DDX1010084.580ENSCGRG00000000153Ddx1010084.694Cricetulus_griseus_crigri
ENSG00000178105DDX107576.575ENSCSEG00000002080ddx106576.575Cynoglossus_semilaevis
ENSG00000178105DDX108671.839ENSCVAG00000000109ddx109471.839Cyprinodon_variegatus
ENSG00000178105DDX108072.560ENSDARG00000061865ddx109860.045Danio_rerio
ENSG00000178105DDX109687.311ENSDNOG00000012542DDX109987.160Dasypus_novemcinctus
ENSG00000178105DDX1010078.107ENSDORG00000014459Ddx1010078.449Dipodomys_ordii
ENSG00000178105DDX108351.504FBgn0030855CG58009153.333Drosophila_melanogaster
ENSG00000178105DDX109365.367ENSETEG00000005526DDX109366.055Echinops_telfairi
ENSG00000178105DDX107569.352ENSEBUG00000007794ddx107969.352Eptatretus_burgeri
ENSG00000178105DDX1010090.785ENSEASG00005010110DDX1010091.013Equus_asinus_asinus
ENSG00000178105DDX1010090.444ENSECAG00000010355DDX1010090.671Equus_caballus
ENSG00000178105DDX1010076.792ENSEEUG00000011164DDX1010077.019Erinaceus_europaeus
ENSG00000178105DDX108170.789ENSELUG00000014515ddx109958.784Esox_lucius
ENSG00000178105DDX1010089.659ENSFCAG00000007246DDX1010090.000Felis_catus
ENSG00000178105DDX108564.163ENSFALG00000000449DDX109863.506Ficedula_albicollis
ENSG00000178105DDX109956.655ENSFHEG00000011340ddx109857.062Fundulus_heteroclitus
ENSG00000178105DDX109958.153ENSGAFG00000011210ddx109857.943Gambusia_affinis
ENSG00000178105DDX109957.966ENSGACG00000002948ddx109957.901Gasterosteus_aculeatus
ENSG00000178105DDX109865.375ENSGAGG00000023967DDX109965.500Gopherus_agassizii
ENSG00000178105DDX1010098.400ENSGGOG00000000271-10098.400Gorilla_gorilla
ENSG00000178105DDX108598.962ENSGGOG00000043387-9598.962Gorilla_gorilla
ENSG00000178105DDX109983.162ENSGGOG00000043095-10083.505Gorilla_gorilla
ENSG00000178105DDX107675.676ENSHBUG00000012476ddx109959.751Haplochromis_burtoni
ENSG00000178105DDX1010085.421ENSHGLG00000013439DDX1010085.877Heterocephalus_glaber_female
ENSG00000178105DDX109689.058ENSHGLG00100003298DDX109489.666Heterocephalus_glaber_male
ENSG00000178105DDX107475.692ENSHCOG00000010943ddx109958.998Hippocampus_comes
ENSG00000178105DDX106445.890ENSIPUG00000012876ddx187545.890Ictalurus_punctatus
ENSG00000178105DDX108071.875ENSIPUG00000024738ddx109855.392Ictalurus_punctatus
ENSG00000178105DDX109888.690ENSSTOG00000005213DDX109988.839Ictidomys_tridecemlineatus
ENSG00000178105DDX109384.945ENSJJAG00000014261Ddx109685.312Jaculus_jaculus
ENSG00000178105DDX108673.372ENSKMAG00000001578ddx109958.163Kryptolebias_marmoratus
ENSG00000178105DDX108774.659ENSLBEG00000011602ddx109474.031Labrus_bergylta
ENSG00000178105DDX109063.395ENSLOCG00000002074ddx109863.745Lepisosteus_oculatus
ENSG00000178105DDX1010088.168ENSLAFG00000005951DDX1010088.956Loxodonta_africana
ENSG00000178105DDX1010096.800ENSMFAG00000045808DDX109196.800Macaca_fascicularis
ENSG00000178105DDX1010073.143ENSMFAG00000042969-10073.371Macaca_fascicularis
ENSG00000178105DDX1010072.457ENSMMUG00000016025-10072.686Macaca_mulatta
ENSG00000178105DDX1010096.800ENSMMUG00000014415DDX1010096.800Macaca_mulatta
ENSG00000178105DDX1010071.657ENSMNEG00000039588-10071.657Macaca_nemestrina
ENSG00000178105DDX1010096.800ENSMNEG00000033513DDX1010096.800Macaca_nemestrina
ENSG00000178105DDX1010073.257ENSMLEG00000035477-10073.829Mandrillus_leucophaeus
ENSG00000178105DDX1010096.571ENSMLEG00000044081DDX1010096.571Mandrillus_leucophaeus
ENSG00000178105DDX107476.587ENSMAMG00000022111ddx105976.190Mastacembelus_armatus
ENSG00000178105DDX107675.869ENSMZEG00005003586ddx109959.977Maylandia_zebra
ENSG00000178105DDX106785.185ENSMGAG00000015145DDX109971.144Meleagris_gallopavo
ENSG00000178105DDX1010090.982ENSMICG00000035071DDX1010091.096Microcebus_murinus
ENSG00000178105DDX1010085.682ENSMOCG00000009915Ddx1010085.682Microtus_ochrogaster
ENSG00000178105DDX107574.854ENSMMOG00000009042ddx109859.200Mola_mola
ENSG00000178105DDX109976.424ENSMODG00000014600DDX109776.082Monodelphis_domestica
ENSG00000178105DDX107078.914ENSMALG00000021441ddx105978.826Monopterus_albus
ENSG00000178105DDX1010085.324MGP_CAROLIEiJ_G0032212Ddx1010085.324Mus_caroli
ENSG00000178105DDX1010084.642ENSMUSG00000053289Ddx1010084.642Mus_musculus
ENSG00000178105DDX1010086.121MGP_PahariEiJ_G0015080Ddx1010086.121Mus_pahari
ENSG00000178105DDX1010085.438MGP_SPRETEiJ_G0033352Ddx109996.825Mus_spretus
ENSG00000178105DDX1010089.647ENSMPUG00000005921DDX1010089.192Mustela_putorius_furo
ENSG00000178105DDX109686.405ENSMLUG00000001645DDX109986.103Myotis_lucifugus
ENSG00000178105DDX1010087.713ENSNGAG00000010526Ddx1010087.713Nannospalax_galili
ENSG00000178105DDX107675.962ENSNBRG00000016684ddx109959.773Neolamprologus_brichardi
ENSG00000178105DDX1010097.486ENSNLEG00000007242DDX1010097.486Nomascus_leucogenys
ENSG00000178105DDX109868.742ENSOPRG00000004266DDX1010068.864Ochotona_princeps
ENSG00000178105DDX105975.236ENSONIG00000007263ddx109359.620Oreochromis_niloticus
ENSG00000178105DDX109476.043ENSOANG00000006243DDX109975.382Ornithorhynchus_anatinus
ENSG00000178105DDX1010089.761ENSOCUG00000003843DDX1010089.647Oryctolagus_cuniculus
ENSG00000178105DDX109563.086ENSORLG00000003073ddx109957.906Oryzias_latipes
ENSG00000178105DDX109858.113ENSORLG00015002672ddx109957.906Oryzias_latipes_hsok
ENSG00000178105DDX107672.538ENSOMEG00000007443ddx109958.436Oryzias_melastigma
ENSG00000178105DDX109689.362ENSOGAG00000010962DDX109989.362Otolemur_garnettii
ENSG00000178105DDX109688.571ENSOARG00000012714DDX1010088.872Ovis_aries
ENSG00000178105DDX1010098.973ENSPPAG00000035222DDX1010098.973Pan_paniscus
ENSG00000178105DDX109983.505ENSPPAG00000032506-10083.734Pan_paniscus
ENSG00000178105DDX1010089.773ENSPPRG00000005990DDX1010090.114Panthera_pardus
ENSG00000178105DDX109389.976ENSPTIG00000010152DDX109390.220Panthera_tigris_altaica
ENSG00000178105DDX1010099.086ENSPTRG00000004256DDX1010099.086Pan_troglodytes
ENSG00000178105DDX109982.932ENSPTRG00000047351-10083.276Pan_troglodytes
ENSG00000178105DDX1010096.800ENSPANG00000015325DDX1010096.800Papio_anubis
ENSG00000178105DDX1010078.971ENSPANG00000029813-10079.200Papio_anubis
ENSG00000178105DDX109563.441ENSPKIG00000015739ddx109955.505Paramormyrops_kingsleyae
ENSG00000178105DDX108772.241ENSPSIG00000014874DDX109971.572Pelodiscus_sinensis
ENSG00000178105DDX109659.949ENSPMGG00000008344ddx108376.892Periophthalmus_magnuspinnatus
ENSG00000178105DDX1010078.256ENSPEMG00000017492Ddx1010078.114Peromyscus_maniculatus_bairdii
ENSG00000178105DDX109977.133ENSPCIG00000003013DDX109988.985Phascolarctos_cinereus
ENSG00000178105DDX108774.131ENSPFOG00000013021ddx109857.143Poecilia_formosa
ENSG00000178105DDX108774.131ENSPLAG00000009048ddx109857.143Poecilia_latipinna
ENSG00000178105DDX108774.324ENSPMEG00000004541ddx109857.257Poecilia_mexicana
ENSG00000178105DDX109957.895ENSPREG00000019559ddx109857.388Poecilia_reticulata
ENSG00000178105DDX1010097.943ENSPPYG00000003849DDX1010097.943Pongo_abelii
ENSG00000178105DDX1010074.032ENSPCAG00000012949DDX1010073.804Procavia_capensis
ENSG00000178105DDX109289.545ENSPCOG00000020289DDX1010089.545Propithecus_coquereli
ENSG00000178105DDX1010084.354ENSPVAG00000007371DDX1010085.034Pteropus_vampyrus
ENSG00000178105DDX107675.869ENSPNYG00000001756ddx109959.796Pundamilia_nyererei
ENSG00000178105DDX107675.148ENSPNAG00000017154ddx109860.137Pygocentrus_nattereri
ENSG00000178105DDX1010085.666ENSRNOG00000012500Ddx1010085.666Rattus_norvegicus
ENSG00000178105DDX1010072.945ENSRBIG00000038689-9873.288Rhinopithecus_bieti
ENSG00000178105DDX1010093.029ENSRBIG00000040612DDX1010093.257Rhinopithecus_bieti
ENSG00000178105DDX1010097.257ENSRROG00000031744DDX1010097.257Rhinopithecus_roxellana
ENSG00000178105DDX108646.231YJL033WHCA45853.675Saccharomyces_cerevisiae
ENSG00000178105DDX1010091.111ENSSBOG00000022735DDX1010091.333Saimiri_boliviensis_boliviensis
ENSG00000178105DDX105193.391ENSSHAG00000008417-10093.391Sarcophilus_harrisii
ENSG00000178105DDX109859.280ENSSFOG00015007982ddx109659.389Scleropages_formosus
ENSG00000178105DDX107673.988ENSSMAG00000018735ddx109858.696Scophthalmus_maximus
ENSG00000178105DDX107674.476ENSSDUG00000018245ddx109958.844Seriola_dumerili
ENSG00000178105DDX107476.482ENSSLDG00000012041ddx109959.065Seriola_lalandi_dorsalis
ENSG00000178105DDX107994.423ENSSARG00000004103DDX107894.423Sorex_araneus
ENSG00000178105DDX109567.873ENSSPUG00000017612DDX108967.643Sphenodon_punctatus
ENSG00000178105DDX107577.362ENSSPAG00000015548ddx109271.655Stegastes_partitus
ENSG00000178105DDX109365.614ENSTGUG00000012605DDX1010065.614Taeniopygia_guttata
ENSG00000178105DDX107176.398ENSTRUG00000010881ddx109159.113Takifugu_rubripes
ENSG00000178105DDX109659.123ENSTNIG00000010477ddx109858.497Tetraodon_nigroviridis
ENSG00000178105DDX108585.047ENSTBEG00000006321DDX109185.047Tupaia_belangeri
ENSG00000178105DDX1010079.252ENSTTRG00000006068DDX1010079.025Tursiops_truncatus
ENSG00000178105DDX107496.208ENSUAMG00000014176DDX1010096.208Ursus_americanus
ENSG00000178105DDX109390.488ENSUMAG00000007300DDX109890.000Ursus_maritimus
ENSG00000178105DDX109288.861ENSVPAG00000010185DDX1010089.356Vicugna_pacos
ENSG00000178105DDX1010088.182ENSVVUG00000015484DDX1010088.750Vulpes_vulpes
ENSG00000178105DDX108967.928ENSXETG00000014458ddx108568.241Xenopus_tropicalis
ENSG00000178105DDX109957.794ENSXCOG00000003080ddx109957.208Xiphophorus_couchianus
ENSG00000178105DDX109857.523ENSXMAG00000016515ddx109757.474Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003724RNA helicase activity8660968.TASFunction
GO:0005524ATP binding-IEAFunction
GO:0097065anterior head development-IEAProcess

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