EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000178952 (Gene tree)
Gene ID
7284
Gene Symbol
TUFM
Alias
EFTu|EF-TuMT|EFTU
Full Name
Tu translation elongation factor, mitochondrial
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
4,101 bases
Position
chr16:28,842,411-28,846,511
Accession
12420
RBP type
canonical RBP
Summary
This gene encodes a protein which participates in protein translation in mitochondria. Mutations in this gene have been associated with combined oxidative phosphorylation deficiency resulting in lactic acidosis and fatal encephalopathy. A pseudogene has been identified on chromosome 17. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000322439GTP_EFTUPF00009.274.7e-5411
ENSP00000322439GTP_EFTU_D2PF03144.254.7e-1411
ENSP00000322439GTP_EFTU_D3PF03143.171.1e-2211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
1588961STP1, a gene involved in pre-tRNA processing, encodes a nuclear protein containing zinc finger motifs.Mol Cell Biol1992 JunWang SS-
24438330Supramolecular membrane-associated assemblies of RNA metabolic proteins in Escherichia coli.Biochem J2014 Feb 15Hoch PGdoi: 10.1042/BJ20131676.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000569217TUFM-204814--- (aa)--
ENST00000565012TUFM-203966-ENSP00000455007101 (aa)-H3BNU3
ENST00000313511TUFM-2012071XM_011545928ENSP00000322439455 (aa)XP_016879108P49411
ENST00000561644TUFM-202294--- (aa)--
Gene Model
Click here to download ENSG00000178952's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000178952Body Fat Distribution8E-826833246
ENSG00000178952Body Fat Distribution5E-626833246
ENSG00000178952Body Fat Distribution1E-826833246
ENSG00000178952Hip4E-825673412
ENSG00000178952Body Mass Index4E-825673412
ENSG00000178952Hip7E-825673412
ENSG00000178952Body Mass Index7E-825673412
ENSG00000178952Body Fat Distribution7E-726833246
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000178952rs47880991628844406GBody fat percentage26833246[0.017-0.037] body fat % increase0.027EFO_0007800
ENSG00000178952rs47880991628844406GBody fat percentage26833246[0.016-0.036] body fat % increase0.026EFO_0007800
ENSG00000178952rs47880991628844406GBody fat percentage26833246[0.017-0.045] body fat % increase0.031EFO_0007800
ENSG00000178952rs47880991628844406GBody fat percentage26833246[0.019-0.045] body fat % increase0.032EFO_0007800
ENSG00000178952rs71877761628846324AHip circumference adjusted for BMI25673412[0.013-0.027] unit decrease0.0197EFO_0008039
ENSG00000178952rs71877761628846324AHip circumference adjusted for BMI25673412[0.016-0.034] unit decrease0.0247EFO_0008039
ENSG00000178952rs71877761628846324?Red blood cell count30595370EFO_0004305
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000178952's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000178952TUFM8531.696ENSG00000101210EEF1A29938.000
ENSG00000178952TUFM8431.011ENSG00000156508EEF1A19938.462
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000178952TUFM9377.488ENSAPOG00000013385tufm9278.641Acanthochromis_polyacanthus
ENSG00000178952TUFM9993.377ENSAMEG00000015551TUFM9993.377Ailuropoda_melanoleuca
ENSG00000178952TUFM9277.512ENSACIG00000007388tufm9577.913Amphilophus_citrinellus
ENSG00000178952TUFM9377.725ENSAOCG00000001032tufm9678.641Amphiprion_ocellaris
ENSG00000178952TUFM9377.725ENSAPEG00000015751tufm9678.641Amphiprion_percula
ENSG00000178952TUFM9973.568ENSATEG00000002905tufm8977.913Anabas_testudineus
ENSG00000178952TUFM9678.281ENSACAG00000005399TUFM8981.752Anolis_carolinensis
ENSG00000178952TUFM9992.731ENSANAG00000022206TUFM9992.731Aotus_nancymaae
ENSG00000178952TUFM9377.014ENSACLG00000007403tufm8678.155Astatotilapia_calliptera
ENSG00000178952TUFM9994.678ENSBTAG00000019216TUFM9994.678Bos_taurus
ENSG00000178952TUFM9156.028WBGene00007000tufm-18456.295Caenorhabditis_elegans
ENSG00000178952TUFM9993.392ENSCJAG00000006236TUFM9993.392Callithrix_jacchus
ENSG00000178952TUFM9994.013ENSCAFG00000017216TUFM9994.013Canis_familiaris
ENSG00000178952TUFM9994.013ENSCAFG00020017574TUFM9994.013Canis_lupus_dingo
ENSG00000178952TUFM9995.122ENSCHIG00000020583TUFM9995.122Capra_hircus
ENSG00000178952TUFM9994.714ENSTSYG00000026053TUFM9994.714Carlito_syrichta
ENSG00000178952TUFM9993.570ENSCPOG00000010534TUFM9993.570Cavia_porcellus
ENSG00000178952TUFM9993.172ENSCCAG00000033296TUFM9993.172Cebus_capucinus
ENSG00000178952TUFM9997.577ENSCATG00000035822TUFM9997.577Cercocebus_atys
ENSG00000178952TUFM9993.126ENSCLAG00000013969TUFM9993.126Chinchilla_lanigera
ENSG00000178952TUFM9997.137ENSCSAG00000006314TUFM9997.137Chlorocebus_sabaeus
ENSG00000178952TUFM9992.511ENSCHOG00000009077TUFM9992.511Choloepus_hoffmanni
ENSG00000178952TUFM9677.852ENSCPBG00000003874TUFM8981.311Chrysemys_picta_bellii
ENSG00000178952TUFM8857.711ENSCING00000002841-9357.711Ciona_intestinalis
ENSG00000178952TUFM9156.220ENSCSAVG00000009380-8657.286Ciona_savignyi
ENSG00000178952TUFM10097.363ENSCANG00000035829TUFM10097.363Colobus_angolensis_palliatus
ENSG00000178952TUFM9992.239ENSCGRG00001022949Tufm9992.239Cricetulus_griseus_chok1gshd
ENSG00000178952TUFM9992.239ENSCGRG00000001868-9992.239Cricetulus_griseus_crigri
ENSG00000178952TUFM9964.615ENSCGRG00000013193-9166.587Cricetulus_griseus_crigri
ENSG00000178952TUFM9275.837ENSCSEG00000013841tufm9676.214Cynoglossus_semilaevis
ENSG00000178952TUFM9974.336ENSCVAG00000006251tufm9777.913Cyprinodon_variegatus
ENSG00000178952TUFM9972.124ENSDARG00000104173tufm9275.971Danio_rerio
ENSG00000178952TUFM9991.630ENSDNOG00000047636TUFM9991.630Dasypus_novemcinctus
ENSG00000178952TUFM9376.941ENSDORG00000023544-9975.294Dipodomys_ordii
ENSG00000178952TUFM9862.361FBgn0024556mEFTu18266.915Drosophila_melanogaster
ENSG00000178952TUFM8778.841ENSETEG00000009601TUFM9978.841Echinops_telfairi
ENSG00000178952TUFM9865.848ENSEBUG00000015907tufm6670.864Eptatretus_burgeri
ENSG00000178952TUFM9994.040ENSEASG00005015477TUFM9994.040Equus_asinus_asinus
ENSG00000178952TUFM9994.013ENSECAG00000019763TUFM9994.013Equus_caballus
ENSG00000178952TUFM8789.141ENSEEUG00000001402TUFM9989.141Erinaceus_europaeus
ENSG00000178952TUFM9974.890ENSELUG00000013410tufm8978.986Esox_lucius
ENSG00000178952TUFM9894.395ENSFCAG00000003103TUFM6594.260Felis_catus
ENSG00000178952TUFM8787.940ENSFDAG00000010881TUFM9990.794Fukomys_damarensis
ENSG00000178952TUFM9770.068ENSFHEG00000020646tufm9868.973Fundulus_heteroclitus
ENSG00000178952TUFM9975.442ENSGMOG00000014616tufm9279.369Gadus_morhua
ENSG00000178952TUFM9974.779ENSGAFG00000004682tufm9678.155Gambusia_affinis
ENSG00000178952TUFM9377.962ENSGACG00000012961tufm9281.056Gasterosteus_aculeatus
ENSG00000178952TUFM9977.974ENSGAGG00000006132TUFM9983.168Gopherus_agassizii
ENSG00000178952TUFM10099.780ENSGGOG00000014136TUFM10099.780Gorilla_gorilla
ENSG00000178952TUFM9377.251ENSHBUG00000019031tufm8978.155Haplochromis_burtoni
ENSG00000178952TUFM9992.035ENSHGLG00000006613TUFM10092.035Heterocephalus_glaber_female
ENSG00000178952TUFM9988.274ENSHGLG00100004096TUFM10088.274Heterocephalus_glaber_male
ENSG00000178952TUFM9875.839ENSHCOG00000014418tufm9479.853Hippocampus_comes
ENSG00000178952TUFM9377.197ENSIPUG00000022457tufm9277.913Ictalurus_punctatus
ENSG00000178952TUFM9741.319ENSIPUG00000020682-8949.206Ictalurus_punctatus
ENSG00000178952TUFM9992.683ENSSTOG00000011837TUFM9992.683Ictidomys_tridecemlineatus
ENSG00000178952TUFM9991.796ENSJJAG00000011840Tufm9991.796Jaculus_jaculus
ENSG00000178952TUFM9974.558ENSKMAG00000009794tufm9278.155Kryptolebias_marmoratus
ENSG00000178952TUFM9277.751ENSLBEG00000023735tufm9678.155Labrus_bergylta
ENSG00000178952TUFM9080.049ENSLACG00000008242TUFM9080.344Latimeria_chalumnae
ENSG00000178952TUFM9891.051ENSLAFG00000028911TUFM9991.051Loxodonta_africana
ENSG00000178952TUFM10097.582ENSMFAG00000033739TUFM10097.582Macaca_fascicularis
ENSG00000178952TUFM10097.802ENSMMUG00000003303TUFM10097.802Macaca_mulatta
ENSG00000178952TUFM10097.802ENSMNEG00000006031TUFM10097.802Macaca_nemestrina
ENSG00000178952TUFM9997.577ENSMLEG00000042133TUFM9997.577Mandrillus_leucophaeus
ENSG00000178952TUFM9378.436ENSMAMG00000002053tufm9279.612Mastacembelus_armatus
ENSG00000178952TUFM9377.251ENSMZEG00005010857tufm8678.155Maylandia_zebra
ENSG00000178952TUFM9992.905ENSMAUG00000010490Tufm9992.905Mesocricetus_auratus
ENSG00000178952TUFM9994.235ENSMICG00000007650TUFM9994.235Microcebus_murinus
ENSG00000178952TUFM9993.126ENSMOCG00000010051Tufm9993.126Microtus_ochrogaster
ENSG00000178952TUFM9276.555ENSMMOG00000012344tufm9176.942Mola_mola
ENSG00000178952TUFM9885.491ENSMODG00000015564TUFM9190.049Monodelphis_domestica
ENSG00000178952TUFM9973.009ENSMALG00000020254tufm9276.699Monopterus_albus
ENSG00000178952TUFM9994.013MGP_CAROLIEiJ_G0030448-9896.491Mus_caroli
ENSG00000178952TUFM9994.013MGP_CAROLIEiJ_G0030449-9994.013Mus_caroli
ENSG00000178952TUFM9993.792ENSMUSG00000073838Tufm9896.491Mus_musculus
ENSG00000178952TUFM9994.013MGP_PahariEiJ_G0013659-9994.013Mus_pahari
ENSG00000178952TUFM9994.013MGP_PahariEiJ_G0013658-9896.491Mus_pahari
ENSG00000178952TUFM9986.680MGP_SPRETEiJ_G0031563-9986.680Mus_spretus
ENSG00000178952TUFM9993.792MGP_SPRETEiJ_G0031562-9895.614Mus_spretus
ENSG00000178952TUFM8095.055ENSMPUG00000012816TUFM9894.865Mustela_putorius_furo
ENSG00000178952TUFM9994.013ENSMLUG00000012335-9994.013Myotis_lucifugus
ENSG00000178952TUFM9994.013ENSNGAG00000008610Tufm9994.013Nannospalax_galili
ENSG00000178952TUFM8077.686ENSNBRG00000006466tufm9677.686Neolamprologus_brichardi
ENSG00000178952TUFM10098.020ENSNLEG00000011063TUFM10098.020Nomascus_leucogenys
ENSG00000178952TUFM7690.490ENSMEUG00000011131TUFM9990.671Notamacropus_eugenii
ENSG00000178952TUFM9979.249ENSOPRG00000002318-9979.249Ochotona_princeps
ENSG00000178952TUFM9377.488ENSONIG00000019389tufm9278.398Oreochromis_niloticus
ENSG00000178952TUFM9188.916ENSOANG00000013114TUFM9588.862Ornithorhynchus_anatinus
ENSG00000178952TUFM9793.018ENSOCUG00000002683TUFM9992.920Oryctolagus_cuniculus
ENSG00000178952TUFM9973.451ENSORLG00000011497tufm9277.184Oryzias_latipes
ENSG00000178952TUFM9973.673ENSORLG00020013437tufm9277.427Oryzias_latipes_hni
ENSG00000178952TUFM9973.673ENSORLG00015003107tufm9277.427Oryzias_latipes_hsok
ENSG00000178952TUFM9973.673ENSOMEG00000016958tufm9277.184Oryzias_melastigma
ENSG00000178952TUFM9992.905ENSOGAG00000006875TUFM9992.905Otolemur_garnettii
ENSG00000178952TUFM9194.189ENSOARG00000002357TUFM9994.417Ovis_aries
ENSG00000178952TUFM10099.780ENSPPAG00000035168TUFM10099.780Pan_paniscus
ENSG00000178952TUFM9894.369ENSPPRG00000014248TUFM9994.260Panthera_pardus
ENSG00000178952TUFM9394.774ENSPTIG00000009980TUFM9795.631Panthera_tigris_altaica
ENSG00000178952TUFM100100.000ENSPTRG00000007939TUFM100100.000Pan_troglodytes
ENSG00000178952TUFM10097.582ENSPANG00000019624TUFM10097.582Papio_anubis
ENSG00000178952TUFM9376.010ENSPKIG00000023809tufm9076.942Paramormyrops_kingsleyae
ENSG00000178952TUFM6780.592ENSPSIG00000005302TUFM9780.592Pelodiscus_sinensis
ENSG00000178952TUFM9276.794ENSPMGG00000015631tufm9777.184Periophthalmus_magnuspinnatus
ENSG00000178952TUFM9993.126ENSPEMG00000012208Tufm9993.126Peromyscus_maniculatus_bairdii
ENSG00000178952TUFM9983.736ENSPCIG00000025208TUFM9089.538Phascolarctos_cinereus
ENSG00000178952TUFM9974.165ENSPFOG00000007043tufm9277.913Poecilia_formosa
ENSG00000178952TUFM9973.951ENSPLAG00000014372tufm9278.155Poecilia_latipinna
ENSG00000178952TUFM9973.731ENSPMEG00000014520-9477.913Poecilia_mexicana
ENSG00000178952TUFM9974.165ENSPMEG00000019508tufm9277.913Poecilia_mexicana
ENSG00000178952TUFM9377.014ENSPREG00000013913tufm9277.913Poecilia_reticulata
ENSG00000178952TUFM9998.238ENSPPYG00000007226TUFM9998.238Pongo_abelii
ENSG00000178952TUFM9984.835ENSPCAG00000015294TUFM9984.835Procavia_capensis
ENSG00000178952TUFM9993.598ENSPCOG00000012267TUFM9993.598Propithecus_coquereli
ENSG00000178952TUFM8086.420ENSPVAG00000003960-5091.096Pteropus_vampyrus
ENSG00000178952TUFM9277.938ENSPNYG00000008905tufm9278.870Pundamilia_nyererei
ENSG00000178952TUFM9278.230ENSPNAG00000018881tufm9278.641Pygocentrus_nattereri
ENSG00000178952TUFM9994.013ENSRNOG00000018604Tufm9994.013Rattus_norvegicus
ENSG00000178952TUFM10092.325ENSRBIG00000042008-10092.325Rhinopithecus_bieti
ENSG00000178952TUFM10087.736ENSRBIG00000036713-9396.063Rhinopithecus_bieti
ENSG00000178952TUFM10086.792ENSRROG00000044977-10086.792Rhinopithecus_roxellana
ENSG00000178952TUFM10097.363ENSRROG00000036858-10097.363Rhinopithecus_roxellana
ENSG00000178952TUFM8662.025YOR187WTUF19062.025Saccharomyces_cerevisiae
ENSG00000178952TUFM9892.188ENSSBOG00000026542TUFM9992.188Saimiri_boliviensis_boliviensis
ENSG00000178952TUFM9289.928ENSSHAG00000012121TUFM9590.511Sarcophilus_harrisii
ENSG00000178952TUFM9774.775ENSSFOG00015013352tufm9378.155Scleropages_formosus
ENSG00000178952TUFM9975.221ENSSMAG00000010053tufm9278.641Scophthalmus_maximus
ENSG00000178952TUFM9277.512ENSSDUG00000016896tufm9277.913Seriola_dumerili
ENSG00000178952TUFM9277.751ENSSLDG00000006494tufm9378.155Seriola_lalandi_dorsalis
ENSG00000178952TUFM8492.895ENSSARG00000011228TUFM9494.944Sorex_araneus
ENSG00000178952TUFM9171.770ENSSPUG00000016312TUFM9671.739Sphenodon_punctatus
ENSG00000178952TUFM9575.576ENSSPAG00000009936tufm9379.064Stegastes_partitus
ENSG00000178952TUFM9994.900ENSSSCG00000007803TUFM9994.900Sus_scrofa
ENSG00000178952TUFM9974.115ENSTRUG00000008300tufm9278.155Takifugu_rubripes
ENSG00000178952TUFM9990.789ENSTBEG00000015029TUFM9991.009Tupaia_belangeri
ENSG00000178952TUFM5791.892ENSTTRG00000005930-5791.892Tursiops_truncatus
ENSG00000178952TUFM6094.545ENSTTRG00000001980-10094.545Tursiops_truncatus
ENSG00000178952TUFM9992.920ENSUAMG00000001471TUFM10092.920Ursus_americanus
ENSG00000178952TUFM8994.828ENSUMAG00000009341TUFM9994.828Ursus_maritimus
ENSG00000178952TUFM6094.182ENSVPAG00000009541TUFM10094.182Vicugna_pacos
ENSG00000178952TUFM9993.570ENSVVUG00000024170TUFM9993.570Vulpes_vulpes
ENSG00000178952TUFM9278.230ENSXMAG00000011848tufm9478.641Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.HDAFunction
GO:0003746translation elongation factor activity21873635.IBAFunction
GO:0003746translation elongation factor activity9332382.IDAFunction
GO:0003924GTPase activity-IEAFunction
GO:0005515protein binding11741979.25416956.28611246.IPIFunction
GO:0005525GTP binding-IEAFunction
GO:0005739mitochondrion20833797.HDAComponent
GO:0005739mitochondrion21873635.IBAComponent
GO:0005739mitochondrion9332382.IDAComponent
GO:0006414translational elongation21873635.IBAProcess
GO:0006414translational elongation9332382.IDAProcess
GO:0016020membrane19946888.HDAComponent
GO:0042645mitochondrial nucleoid18063578.IDAComponent
GO:0045202synapse-IEAComponent
GO:0045471response to ethanol-IEAProcess
GO:0070062extracellular exosome20458337.HDAComponent
GO:0070125mitochondrial translational elongation21873635.IBAProcess

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