EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000179115 (Gene tree)
Gene ID
2193
Gene Symbol
FARSA
Alias
CML33|FARSL|FARSLA
Full Name
phenylalanyl-tRNA synthetase subunit alpha
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
11,568 bases
Position
chr19:12,922,470-12,934,037
Accession
3592
RBP type
canonical RBP
Summary
Aminoacyl-tRNA synthetases are a class of enzymes that charge tRNAs with their cognate amino acids. This gene encodes a product which is similar to the catalytic subunit of prokaryotic and Saccharomyces cerevisiae phenylalanyl-tRNA synthetases (PheRS). This gene product has been shown to be expressed in a tumor-selective and cell cycle stage- and differentiation-dependent manner, the first member of the tRNA synthetase gene family shown to exhibit this type of regulated expression [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000396548tRNA-synt_2dPF01409.205.3e-9011
ENSP00000320309tRNA-synt_2dPF01409.206.2e-9011
ENSP00000468051tRNA-synt_2dPF01409.207.4e-9011
ENSP00000467384tRNA-synt_2dPF01409.207.5e-8011
ENSP00000468384tRNA-synt_2dPF01409.201.1e-3711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000588025FARSA-2072057-ENSP00000468051548 (aa)-K7ER00
ENST00000314606FARSA-2011814XM_024451419ENSP00000320309508 (aa)XP_024307187Q9Y285
ENST00000587488FARSA-205514-ENSP00000468384159 (aa)-K7ERS0
ENST00000588965FARSA-2081831--- (aa)--
ENST00000593021FARSA-2101135-ENSP00000467384378 (aa)-K7EPH2
ENST00000592662FARSA-209864--- (aa)--
ENST00000586146FARSA-2031707-ENSP00000468068235 (aa)-K7ER16
ENST00000423140FARSA-2021720-ENSP00000396548477 (aa)-Q9Y285
ENST00000586280FARSA-204803--- (aa)--
ENST00000587981FARSA-206521-ENSP00000465402168 (aa)-K7EK06
Gene Model
Click here to download ENSG00000179115's gene model file
Pathways
Pathway IDPathway NameSource
hsa00970Aminoacyl-tRNA biosynthesisKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000179115Antibodies8E-624324551
ENSG00000179115Trypanosoma cruzi8E-624324551
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000179115rs739252361912926896ARed blood cell count27863252[0.056-0.095] unit increase0.07515767EFO_0004305
ENSG00000179115rs621098651912926920?Antibody status in Tripanosoma cruzi seropositivity24324551EFO_0004556|EFO_0005530
ENSG00000179115rs1117577741912931815?Mean corpuscular hemoglobin30595370EFO_0004527
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000179115's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000179115FARSA9978.443ENSAPOG00000011465farsa10077.062Acanthochromis_polyacanthus
ENSG00000179115FARSA9996.407ENSAMEG00000012446FARSA10094.488Ailuropoda_melanoleuca
ENSG00000179115FARSA9971.856ENSACIG00000020499farsa10072.636Amphilophus_citrinellus
ENSG00000179115FARSA9977.844ENSAOCG00000000581farsa10076.660Amphiprion_ocellaris
ENSG00000179115FARSA9977.844ENSAPEG00000017695farsa10076.861Amphiprion_percula
ENSG00000179115FARSA9863.655ENSATEG00000012633farsa10063.655Anabas_testudineus
ENSG00000179115FARSA9874.200ENSATEG00000012807farsa10074.200Anabas_testudineus
ENSG00000179115FARSA9982.036ENSACAG00000017166FARSA8877.055Anolis_carolinensis
ENSG00000179115FARSA10096.850ENSANAG00000037420FARSA10096.850Aotus_nancymaae
ENSG00000179115FARSA9978.443ENSACLG00000001716farsa10077.062Astatotilapia_calliptera
ENSG00000179115FARSA9979.341ENSAMXG00000037912farsa10078.672Astyanax_mexicanus
ENSG00000179115FARSA9996.108ENSBTAG00000021374FARSA10094.488Bos_taurus
ENSG00000179115FARSA8669.343WBGene00001497fars-19560.294Caenorhabditis_elegans
ENSG00000179115FARSA10095.807ENSCJAG00000004686FARSA10095.807Callithrix_jacchus
ENSG00000179115FARSA9996.108ENSCAFG00000017096FARSA10094.882Canis_familiaris
ENSG00000179115FARSA9996.108ENSCAFG00020005315FARSA10094.882Canis_lupus_dingo
ENSG00000179115FARSA9995.858ENSCHIG00000022617FARSA10088.694Capra_hircus
ENSG00000179115FARSA9094.118ENSTSYG00000002595FARSA8589.787Carlito_syrichta
ENSG00000179115FARSA9193.261ENSCAPG00000011353FARSA9893.464Cavia_aperea
ENSG00000179115FARSA10092.520ENSCPOG00000000787FARSA10092.520Cavia_porcellus
ENSG00000179115FARSA10097.047ENSCCAG00000028176FARSA10097.047Cebus_capucinus
ENSG00000179115FARSA9993.713ENSCLAG00000015489FARSA10092.323Chinchilla_lanigera
ENSG00000179115FARSA9499.161ENSCSAG00000006530FARSA10099.161Chlorocebus_sabaeus
ENSG00000179115FARSA9781.138ENSCPBG00000023915FARSA9980.240Chrysemys_picta_bellii
ENSG00000179115FARSA9862.575ENSCING00000002567-9962.575Ciona_intestinalis
ENSG00000179115FARSA9863.380ENSCSAVG00000010683-9863.380Ciona_savignyi
ENSG00000179115FARSA10098.622ENSCANG00000043649-10098.622Colobus_angolensis_palliatus
ENSG00000179115FARSA10091.929ENSCGRG00001019769Farsa10091.929Cricetulus_griseus_chok1gshd
ENSG00000179115FARSA10091.929ENSCGRG00000013415Farsa10091.929Cricetulus_griseus_crigri
ENSG00000179115FARSA9977.844ENSCSEG00000016214farsa9676.258Cynoglossus_semilaevis
ENSG00000179115FARSA9976.048ENSCVAG00000007907farsa10075.855Cyprinodon_variegatus
ENSG00000179115FARSA9979.940ENSDARG00000098825farsa10077.867Danio_rerio
ENSG00000179115FARSA9694.012ENSDNOG00000032350FARSA9993.840Dasypus_novemcinctus
ENSG00000179115FARSA9993.713ENSDORG00000010118Farsa10092.323Dipodomys_ordii
ENSG00000179115FARSA9762.753FBgn0030007alpha-PheRS9962.753Drosophila_melanogaster
ENSG00000179115FARSA10084.843ENSETEG00000018673FARSA10084.843Echinops_telfairi
ENSG00000179115FARSA9863.043ENSEBUG00000008545farsa9967.905Eptatretus_burgeri
ENSG00000179115FARSA9893.913ENSEASG00005004093FARSA9583.208Equus_asinus_asinus
ENSG00000179115FARSA10095.079ENSECAG00000015139FARSA9595.079Equus_caballus
ENSG00000179115FARSA9978.443ENSELUG00000010183farsa10077.264Esox_lucius
ENSG00000179115FARSA9997.305ENSFCAG00000023511FARSA10095.669Felis_catus
ENSG00000179115FARSA9994.012ENSFDAG00000005987FARSA10092.505Fukomys_damarensis
ENSG00000179115FARSA9979.042ENSFHEG00000009382farsa9477.666Fundulus_heteroclitus
ENSG00000179115FARSA9977.612ENSGMOG00000018319farsa10076.707Gadus_morhua
ENSG00000179115FARSA9978.743ENSGALG00000040258FARSA9373.019Gallus_gallus
ENSG00000179115FARSA9978.078ENSGAFG00000014146farsa10077.465Gambusia_affinis
ENSG00000179115FARSA9978.507ENSGACG00000006278farsa10076.908Gasterosteus_aculeatus
ENSG00000179115FARSA9980.539ENSGAGG00000000753FARSA9980.240Gopherus_agassizii
ENSG00000179115FARSA10099.213ENSGGOG00000003418FARSA10099.213Gorilla_gorilla
ENSG00000179115FARSA9978.443ENSHBUG00000019852farsa10077.062Haplochromis_burtoni
ENSG00000179115FARSA9993.413ENSHGLG00000005213FARSA10092.659Heterocephalus_glaber_female
ENSG00000179115FARSA9993.713ENSHGLG00100009586FARSA9993.000Heterocephalus_glaber_male
ENSG00000179115FARSA9978.443ENSHCOG00000019548farsa10075.453Hippocampus_comes
ENSG00000179115FARSA9979.641ENSIPUG00000007635farsa10077.867Ictalurus_punctatus
ENSG00000179115FARSA9994.611ENSSTOG00000008748FARSA10093.097Ictidomys_tridecemlineatus
ENSG00000179115FARSA9977.844ENSKMAG00000010698farsa10077.465Kryptolebias_marmoratus
ENSG00000179115FARSA8681.752ENSLBEG00000001258farsa9773.882Labrus_bergylta
ENSG00000179115FARSA9977.844ENSLBEG00000006757-10076.861Labrus_bergylta
ENSG00000179115FARSA9980.539ENSLOCG00000008389farsa9976.667Lepisosteus_oculatus
ENSG00000179115FARSA9994.910ENSLAFG00000016154FARSA10092.913Loxodonta_africana
ENSG00000179115FARSA10099.016ENSMFAG00000030595FARSA10099.016Macaca_fascicularis
ENSG00000179115FARSA10099.016ENSMMUG00000004390FARSA10099.016Macaca_mulatta
ENSG00000179115FARSA10099.016ENSMNEG00000043866FARSA10099.016Macaca_nemestrina
ENSG00000179115FARSA10098.625ENSMLEG00000029157FARSA10098.625Mandrillus_leucophaeus
ENSG00000179115FARSA9979.042ENSMAMG00000010636farsa10077.867Mastacembelus_armatus
ENSG00000179115FARSA9978.443ENSMZEG00005002319farsa10077.062Maylandia_zebra
ENSG00000179115FARSA8684.672ENSMGAG00000002458FARSA10085.787Meleagris_gallopavo
ENSG00000179115FARSA10093.110ENSMAUG00000009188Farsa10093.110Mesocricetus_auratus
ENSG00000179115FARSA9997.305ENSMICG00000016272FARSA10096.260Microcebus_murinus
ENSG00000179115FARSA10093.110ENSMOCG00000011399Farsa10093.110Microtus_ochrogaster
ENSG00000179115FARSA9975.449ENSMMOG00000006287farsa10074.447Mola_mola
ENSG00000179115FARSA9987.425ENSMODG00000011519FARSA10086.089Monodelphis_domestica
ENSG00000179115FARSA9873.843ENSMALG00000001972farsa10073.843Monopterus_albus
ENSG00000179115FARSA10092.717MGP_CAROLIEiJ_G0031312Farsa10092.717Mus_caroli
ENSG00000179115FARSA10092.520ENSMUSG00000003808Farsa10092.520Mus_musculus
ENSG00000179115FARSA10092.323MGP_PahariEiJ_G0022917Farsa10092.323Mus_pahari
ENSG00000179115FARSA10092.717MGP_SPRETEiJ_G0032431Farsa10092.717Mus_spretus
ENSG00000179115FARSA9995.808ENSMPUG00000004400FARSA10094.291Mustela_putorius_furo
ENSG00000179115FARSA9995.509ENSMLUG00000012767FARSA10093.701Myotis_lucifugus
ENSG00000179115FARSA8697.810ENSNGAG00000018353Farsa10094.851Nannospalax_galili
ENSG00000179115FARSA9978.743ENSNBRG00000010063farsa10077.264Neolamprologus_brichardi
ENSG00000179115FARSA10098.622ENSNLEG00000012899FARSA10098.622Nomascus_leucogenys
ENSG00000179115FARSA9986.228ENSMEUG00000014253FARSA10084.909Notamacropus_eugenii
ENSG00000179115FARSA9994.311ENSOPRG00000005004FARSA10092.717Ochotona_princeps
ENSG00000179115FARSA9993.413ENSODEG00000010433FARSA10092.323Octodon_degus
ENSG00000179115FARSA9979.042ENSONIG00000008075farsa10077.666Oreochromis_niloticus
ENSG00000179115FARSA6084.375ENSOANG00000009118-10090.385Ornithorhynchus_anatinus
ENSG00000179115FARSA9978.144ENSORLG00000016406farsa9076.258Oryzias_latipes
ENSG00000179115FARSA9978.443ENSORLG00020021978farsa10076.459Oryzias_latipes_hni
ENSG00000179115FARSA9978.614ENSORLG00015015045farsa10076.459Oryzias_latipes_hsok
ENSG00000179115FARSA9978.743ENSOMEG00000017367farsa9776.660Oryzias_melastigma
ENSG00000179115FARSA9996.407ENSOGAG00000012243FARSA10095.079Otolemur_garnettii
ENSG00000179115FARSA9996.707ENSOARG00000009991FARSA9494.685Ovis_aries
ENSG00000179115FARSA10099.409ENSPPAG00000034266FARSA10099.409Pan_paniscus
ENSG00000179115FARSA9997.305ENSPPRG00000000346FARSA10095.669Panthera_pardus
ENSG00000179115FARSA9396.596ENSPTIG00000011502FARSA9796.596Panthera_tigris_altaica
ENSG00000179115FARSA10099.606ENSPTRG00000010550FARSA10099.606Pan_troglodytes
ENSG00000179115FARSA10098.819ENSPANG00000010978FARSA10098.742Papio_anubis
ENSG00000179115FARSA9978.144ENSPKIG00000007170farsa10077.062Paramormyrops_kingsleyae
ENSG00000179115FARSA8876.392ENSPSIG00000012701FARSA9976.149Pelodiscus_sinensis
ENSG00000179115FARSA9971.257ENSPMGG00000001401farsa10072.233Periophthalmus_magnuspinnatus
ENSG00000179115FARSA10092.717ENSPEMG00000012560Farsa10092.717Peromyscus_maniculatus_bairdii
ENSG00000179115FARSA9979.641ENSPMAG00000008453farsa10075.855Petromyzon_marinus
ENSG00000179115FARSA9987.725ENSPCIG00000019294FARSA10086.117Phascolarctos_cinereus
ENSG00000179115FARSA9978.443ENSPFOG00000001201farsa10077.465Poecilia_formosa
ENSG00000179115FARSA9978.443ENSPLAG00000018191farsa10077.465Poecilia_latipinna
ENSG00000179115FARSA9978.443ENSPMEG00000013547farsa10077.666Poecilia_mexicana
ENSG00000179115FARSA9872.837ENSPREG00000013620farsa10072.837Poecilia_reticulata
ENSG00000179115FARSA10099.409ENSPPYG00000009615FARSA10099.409Pongo_abelii
ENSG00000179115FARSA9994.012ENSPCAG00000015721FARSA10092.717Procavia_capensis
ENSG00000179115FARSA9997.904ENSPCOG00000014412FARSA10096.654Propithecus_coquereli
ENSG00000179115FARSA9191.549ENSPVAG00000014714FARSA8794.273Pteropus_vampyrus
ENSG00000179115FARSA9978.443ENSPNYG00000002144farsa10077.062Pundamilia_nyererei
ENSG00000179115FARSA9980.240ENSPNAG00000000869farsa10078.270Pygocentrus_nattereri
ENSG00000179115FARSA9994.311ENSRNOG00000003149Farsa10092.520Rattus_norvegicus
ENSG00000179115FARSA10098.622ENSRBIG00000025585FARSA10098.622Rhinopithecus_bieti
ENSG00000179115FARSA10098.622ENSRROG00000040046FARSA10098.532Rhinopithecus_roxellana
ENSG00000179115FARSA8658.993YFL022CFRS29350.000Saccharomyces_cerevisiae
ENSG00000179115FARSA10097.244ENSSBOG00000031362FARSA10097.244Saimiri_boliviensis_boliviensis
ENSG00000179115FARSA8690.511ENSSHAG00000015006FARSA10085.906Sarcophilus_harrisii
ENSG00000179115FARSA9978.144ENSSFOG00015014864farsa10075.855Scleropages_formosus
ENSG00000179115FARSA9978.979ENSSMAG00000002358farsa10077.062Scophthalmus_maximus
ENSG00000179115FARSA9977.246ENSSDUG00000008631farsa10075.855Seriola_dumerili
ENSG00000179115FARSA9976.946ENSSLDG00000017108farsa10075.855Seriola_lalandi_dorsalis
ENSG00000179115FARSA9889.565ENSSARG00000006579-7091.111Sorex_araneus
ENSG00000179115FARSA9866.172ENSSPUG00000012509FARSA9966.809Sphenodon_punctatus
ENSG00000179115FARSA9977.844ENSSPAG00000018292farsa9276.861Stegastes_partitus
ENSG00000179115FARSA9996.407ENSSSCG00000013745FARSA10094.685Sus_scrofa
ENSG00000179115FARSA9867.807ENSTRUG00000010624farsa10067.807Takifugu_rubripes
ENSG00000179115FARSA9871.630ENSTNIG00000008330farsa10071.630Tetraodon_nigroviridis
ENSG00000179115FARSA9091.068ENSTBEG00000000396FARSA10091.068Tupaia_belangeri
ENSG00000179115FARSA9892.174ENSTTRG00000003599FARSA8793.719Tursiops_truncatus
ENSG00000179115FARSA9996.407ENSUAMG00000010230FARSA10094.488Ursus_americanus
ENSG00000179115FARSA9996.407ENSUMAG00000006110FARSA10094.291Ursus_maritimus
ENSG00000179115FARSA9996.108ENSVVUG00000024145FARSA10094.882Vulpes_vulpes
ENSG00000179115FARSA9977.246ENSXETG00000007936farsa10076.506Xenopus_tropicalis
ENSG00000179115FARSA9869.076ENSXCOG00000015512farsa10069.076Xiphophorus_couchianus
ENSG00000179115FARSA9977.177ENSXMAG00000008832farsa10076.258Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000049tRNA binding-IEAFunction
GO:0003723RNA binding22681889.HDAFunction
GO:0004826phenylalanine-tRNA ligase activity21873635.IBAFunction
GO:0004826phenylalanine-tRNA ligase activity20223217.IDAFunction
GO:0005515protein binding20223217.21163940.24965446.25416956.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005737cytoplasm21873635.IBAComponent
GO:0005829cytosol21873635.IBAComponent
GO:0005829cytosol-TASComponent
GO:0006418tRNA aminoacylation for protein translation-TASProcess
GO:0006432phenylalanyl-tRNA aminoacylation21873635.IBAProcess
GO:0006432phenylalanyl-tRNA aminoacylation20223217.IDAProcess
GO:0009328phenylalanine-tRNA ligase complex21873635.IBAComponent
GO:0009328phenylalanine-tRNA ligase complex20223217.IDAComponent
GO:0016020membrane19946888.HDAComponent
GO:0051290protein heterotetramerization20223217.IDAProcess

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us