EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000179151 (Gene tree)
Gene ID
80153
Gene Symbol
EDC3
Alias
FLJ21128|hYjeF_N2-15q23|YJEFN2|LSM16|YJDC
Full Name
enhancer of mRNA decapping 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
65,735 bases
Position
chr15:74,630,558-74,696,292
Accession
26114
RBP type
canonical RBP
Summary
This gene encodes a protein that is important in mRNA degradation. The encoded protein is a component of a decapping complex that promotes efficient removal of the monomethylguanosine (m7G) cap from mRNAs, as part of the 5' to 3' mRNA decay pathway. Mutations in this gene have been identified in human patients with an autosomal recessive form of intellectual disability. [provided by RefSeq, May 2017]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000456805FDFPF09532.103.7e-1911
ENSP00000320503FDFPF09532.101.3e-1811
ENSP00000401343FDFPF09532.101.3e-1811
ENSP00000455580FDFPF09532.101.3e-1811
ENSP00000497737FDFPF09532.101.3e-1811
ENSP00000455503FDFPF09532.101.7e-0911
ENSP00000455393FDFPF09532.103.5e-0611
ENSP00000454317LSM14PF12701.76.9e-1111
ENSP00000457170LSM14PF12701.79.1e-1111
ENSP00000455870LSM14PF12701.71.6e-1011
ENSP00000457523LSM14PF12701.71.6e-1011
ENSP00000455589LSM14PF12701.73.6e-1011
ENSP00000455503LSM14PF12701.77e-1011
ENSP00000320503LSM14PF12701.72.5e-0911
ENSP00000401343LSM14PF12701.72.5e-0911
ENSP00000455580LSM14PF12701.72.5e-0911
ENSP00000497737LSM14PF12701.72.5e-0911
ENSP00000457156LSM14PF12701.72.6e-0811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
18678652Crystal structure of human Edc3 and its functional implications.Mol Cell Biol2008 OctLing SHdoi: 10.1128/MCB.00761-08
23851565Structural analysis of the yeast Dhh1-Pat1 complex reveals how Dhh1 engages Pat1, Edc3 and RNA in mutually exclusive interactions.Nucleic Acids Res2013 SepSharif Hdoi: 10.1093/nar/gkt600
28089630The Aspergillus nidulans Pbp1 homolog is required for normal sexual development and secondary metabolism.Fungal Genet Biol2017 MarSoukup AAdoi: 10.1016/j.fgb.2017.01.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000570138EDC3-218573-ENSP00000457170101 (aa)-H3BTH0
ENST00000563292EDC3-207588-ENSP0000045431792 (aa)-H3BMB8
ENST00000562174EDC3-204761-ENSP00000455393213 (aa)-H3BPN4
ENST00000565602EDC3-2081862-ENSP0000045488557 (aa)-H3BNJ7
ENST00000566828EDC3-212574-ENSP00000455870123 (aa)-H3BQP5
ENST00000566243EDC3-211711-ENSP00000457523131 (aa)-H3BU87
ENST00000647659EDC3-2193810XM_024450077ENSP00000497737508 (aa)XP_024305845UPI000007309A
ENST00000315127EDC3-2013763XM_011522092ENSP00000320503508 (aa)XP_011520394Q96F86
ENST00000562047EDC3-203559--- (aa)--
ENST00000426797EDC3-2022093-ENSP00000401343508 (aa)-Q96F86
ENST00000569606EDC3-217533--- (aa)--
ENST00000567813EDC3-213471-ENSP0000045715654 (aa)-H3BTF8
ENST00000568176EDC3-2141825-ENSP00000455580508 (aa)-Q96F86
ENST00000563009EDC3-206967-ENSP00000455503253 (aa)-H3BPW9
ENST00000566219EDC3-210688-ENSP00000456805163 (aa)-H3BSQ0
ENST00000569561EDC3-216658-ENSP00000455589177 (aa)-H3BQ37
ENST00000569007EDC3-215379--- (aa)--
ENST00000566119EDC3-209479-ENSP0000045568231 (aa)-H3BQA1
ENST00000562974EDC3-205204-ENSP0000045712868 (aa)-H3BTD6
Gene Model
Click here to download ENSG00000179151's gene model file
Pathways
Pathway IDPathway NameSource
hsa03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000179151's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000179151EDC310077.778ENSAPOG00000008655EDC310055.792Acanthochromis_polyacanthus
ENSG00000179151EDC310083.333ENSAPOG00000010791edc310069.804Acanthochromis_polyacanthus
ENSG00000179151EDC310098.160ENSAMEG00000008963EDC310096.260Ailuropoda_melanoleuca
ENSG00000179151EDC310081.481ENSACIG00000017751edc310068.959Amphilophus_citrinellus
ENSG00000179151EDC310074.074ENSACIG00000005330EDC39959.259Amphilophus_citrinellus
ENSG00000179151EDC310081.481ENSAOCG00000005431edc310069.804Amphiprion_ocellaris
ENSG00000179151EDC310081.481ENSAOCG00000009103-10057.946Amphiprion_ocellaris
ENSG00000179151EDC310081.481ENSAPEG00000000968edc310069.804Amphiprion_percula
ENSG00000179151EDC310081.481ENSAPEG00000007841EDC310057.946Amphiprion_percula
ENSG00000179151EDC310081.481ENSATEG00000015505edc310069.941Anabas_testudineus
ENSG00000179151EDC310080.645ENSATEG00000004205-10058.667Anabas_testudineus
ENSG00000179151EDC310092.025ENSAPLG00000008957EDC310087.033Anas_platyrhynchos
ENSG00000179151EDC310092.638ENSACAG00000000460-10087.406Anolis_carolinensis
ENSG00000179151EDC3100100.000ENSANAG00000024078EDC310098.622Aotus_nancymaae
ENSG00000179151EDC310077.778ENSACLG00000018776-9958.398Astatotilapia_calliptera
ENSG00000179151EDC310081.481ENSACLG00000007232edc310067.780Astatotilapia_calliptera
ENSG00000179151EDC310081.481ENSAMXG00000001589edc310070.428Astyanax_mexicanus
ENSG00000179151EDC3100100.000ENSBTAG00000007308EDC310097.244Bos_taurus
ENSG00000179151EDC3100100.000ENSCJAG00000017681EDC310098.622Callithrix_jacchus
ENSG00000179151EDC3100100.000ENSCAFG00000017935EDC310096.457Canis_familiaris
ENSG00000179151EDC3100100.000ENSCAFG00020003909EDC310096.457Canis_lupus_dingo
ENSG00000179151EDC3100100.000ENSCHIG00000023658EDC310097.047Capra_hircus
ENSG00000179151EDC3100100.000ENSTSYG00000004822EDC310097.441Carlito_syrichta
ENSG00000179151EDC3100100.000ENSCAPG00000000377-100100.000Cavia_aperea
ENSG00000179151EDC3100100.000ENSCPOG00000015595EDC310095.276Cavia_porcellus
ENSG00000179151EDC3100100.000ENSCCAG00000021663EDC310099.016Cebus_capucinus
ENSG00000179151EDC3100100.000ENSCATG00000037511EDC310098.622Cercocebus_atys
ENSG00000179151EDC3100100.000ENSCLAG00000005700EDC310095.079Chinchilla_lanigera
ENSG00000179151EDC3100100.000ENSCSAG00000014239EDC310098.622Chlorocebus_sabaeus
ENSG00000179151EDC310098.148ENSCPBG00000024239EDC310089.173Chrysemys_picta_bellii
ENSG00000179151EDC39547.531ENSCING00000022142-9938.462Ciona_intestinalis
ENSG00000179151EDC3100100.000ENSCANG00000028699EDC310098.622Colobus_angolensis_palliatus
ENSG00000179151EDC310098.148ENSCGRG00001013874Edc310096.654Cricetulus_griseus_chok1gshd
ENSG00000179151EDC310098.148ENSCGRG00000011885Edc310096.654Cricetulus_griseus_crigri
ENSG00000179151EDC310081.481ENSCSEG00000012996edc39969.685Cynoglossus_semilaevis
ENSG00000179151EDC310079.630ENSCVAG00000008023edc310069.608Cyprinodon_variegatus
ENSG00000179151EDC310077.576ENSDARG00000051931edc39969.006Danio_rerio
ENSG00000179151EDC3100100.000ENSDNOG00000030661EDC310085.271Dasypus_novemcinctus
ENSG00000179151EDC3100100.000ENSDORG00000025261-100100.000Dipodomys_ordii
ENSG00000179151EDC310098.148ENSETEG00000002398-6498.148Echinops_telfairi
ENSG00000179151EDC3100100.000ENSEASG00005005071EDC310097.638Equus_asinus_asinus
ENSG00000179151EDC3100100.000ENSECAG00000017994EDC310097.638Equus_caballus
ENSG00000179151EDC310081.481ENSELUG00000005794edc310066.082Esox_lucius
ENSG00000179151EDC310075.926ENSELUG00000007607EDC310061.840Esox_lucius
ENSG00000179151EDC310098.160ENSFCAG00000002014EDC310096.063Felis_catus
ENSG00000179151EDC310098.148ENSFALG00000004543EDC39684.569Ficedula_albicollis
ENSG00000179151EDC3100100.000ENSFDAG00000012582EDC310095.079Fukomys_damarensis
ENSG00000179151EDC310081.481ENSFHEG00000009375edc310070.000Fundulus_heteroclitus
ENSG00000179151EDC310081.481ENSGMOG00000002715edc310068.359Gadus_morhua
ENSG00000179151EDC310098.148ENSGALG00000040181EDC310088.583Gallus_gallus
ENSG00000179151EDC310079.630ENSGAFG00000014433edc310068.288Gambusia_affinis
ENSG00000179151EDC310078.659ENSGACG00000009783edc310068.762Gasterosteus_aculeatus
ENSG00000179151EDC310072.222ENSGACG00000014671EDC39955.922Gasterosteus_aculeatus
ENSG00000179151EDC310098.148ENSGAGG00000023477EDC310088.976Gopherus_agassizii
ENSG00000179151EDC3100100.000ENSGGOG00000003552EDC310099.803Gorilla_gorilla
ENSG00000179151EDC310077.778ENSHBUG00000020817EDC39958.398Haplochromis_burtoni
ENSG00000179151EDC310081.481ENSHBUG00000003635edc310067.780Haplochromis_burtoni
ENSG00000179151EDC3100100.000ENSHGLG00000020876-100100.000Heterocephalus_glaber_female
ENSG00000179151EDC310098.148ENSHGLG00100019573-10098.182Heterocephalus_glaber_male
ENSG00000179151EDC310079.630ENSHCOG00000016834edc310067.906Hippocampus_comes
ENSG00000179151EDC310077.778ENSIPUG00000005695edc310070.450Ictalurus_punctatus
ENSG00000179151EDC3100100.000ENSSTOG00000013936EDC310097.638Ictidomys_tridecemlineatus
ENSG00000179151EDC310093.548ENSJJAG00000012800-9182.812Jaculus_jaculus
ENSG00000179151EDC310098.148ENSJJAG00000008074Edc310095.669Jaculus_jaculus
ENSG00000179151EDC310081.481ENSKMAG00000001243edc310069.352Kryptolebias_marmoratus
ENSG00000179151EDC310074.074ENSKMAG00000001987EDC310055.750Kryptolebias_marmoratus
ENSG00000179151EDC310079.630ENSLBEG00000013435edc39969.412Labrus_bergylta
ENSG00000179151EDC310075.926ENSLBEG00000017984EDC310058.527Labrus_bergylta
ENSG00000179151EDC310090.184ENSLACG00000014149EDC310077.864Latimeria_chalumnae
ENSG00000179151EDC310079.630ENSLOCG00000014625edc39967.641Lepisosteus_oculatus
ENSG00000179151EDC310098.160ENSLAFG00000002992EDC310095.669Loxodonta_africana
ENSG00000179151EDC310098.773ENSMFAG00000043074EDC310098.228Macaca_fascicularis
ENSG00000179151EDC310098.773ENSMMUG00000011071EDC310098.228Macaca_mulatta
ENSG00000179151EDC310098.773ENSMNEG00000035316EDC310098.228Macaca_nemestrina
ENSG00000179151EDC3100100.000ENSMLEG00000030372EDC310098.622Mandrillus_leucophaeus
ENSG00000179151EDC39776.667ENSMAMG00000005423-9956.836Mastacembelus_armatus
ENSG00000179151EDC310081.481ENSMAMG00000000505edc310069.941Mastacembelus_armatus
ENSG00000179151EDC310081.481ENSMZEG00005004892edc310067.780Maylandia_zebra
ENSG00000179151EDC310077.778ENSMZEG00005005654EDC39958.594Maylandia_zebra
ENSG00000179151EDC310098.148ENSMGAG00000002617EDC310087.598Meleagris_gallopavo
ENSG00000179151EDC310098.148ENSMICG00000043190EDC310097.047Microcebus_murinus
ENSG00000179151EDC310096.933ENSMOCG00000016205Edc310096.654Microtus_ochrogaster
ENSG00000179151EDC310079.630ENSMMOG00000012278edc39968.959Mola_mola
ENSG00000179151EDC310098.148ENSMODG00000009442EDC310092.717Monodelphis_domestica
ENSG00000179151EDC310079.630ENSMALG00000008658edc310069.548Monopterus_albus
ENSG00000179151EDC310098.246MGP_CAROLIEiJ_G0032280Edc310098.462Mus_caroli
ENSG00000179151EDC310098.246ENSMUSG00000038957Edc310098.462Mus_musculus
ENSG00000179151EDC310098.246MGP_PahariEiJ_G0015146Edc310098.462Mus_pahari
ENSG00000179151EDC310098.246MGP_SPRETEiJ_G0033420Edc310098.462Mus_spretus
ENSG00000179151EDC310098.773ENSMPUG00000017293EDC310095.866Mustela_putorius_furo
ENSG00000179151EDC3100100.000ENSMLUG00000016382EDC310096.667Myotis_lucifugus
ENSG00000179151EDC310098.148ENSNGAG00000010923Edc310096.063Nannospalax_galili
ENSG00000179151EDC310077.778ENSNBRG00000007881EDC39958.594Neolamprologus_brichardi
ENSG00000179151EDC310081.481ENSNBRG00000002434edc310067.976Neolamprologus_brichardi
ENSG00000179151EDC3100100.000ENSNLEG00000014577EDC310089.173Nomascus_leucogenys
ENSG00000179151EDC310096.933ENSMEUG00000009077EDC310091.535Notamacropus_eugenii
ENSG00000179151EDC310096.296ENSOPRG00000009540-7996.296Ochotona_princeps
ENSG00000179151EDC3100100.000ENSODEG00000020214-100100.000Octodon_degus
ENSG00000179151EDC310081.481ENSONIG00000008434edc310067.976Oreochromis_niloticus
ENSG00000179151EDC310077.778ENSONIG00000002932-9959.844Oreochromis_niloticus
ENSG00000179151EDC310098.148ENSOANG00000030799-9579.739Ornithorhynchus_anatinus
ENSG00000179151EDC310096.296ENSOCUG00000017740EDC38691.184Oryctolagus_cuniculus
ENSG00000179151EDC310077.778ENSORLG00000004883edc310067.780Oryzias_latipes
ENSG00000179151EDC310074.074ENSORLG00000014399-9856.641Oryzias_latipes
ENSG00000179151EDC310074.074ENSORLG00020019446-10056.641Oryzias_latipes_hni
ENSG00000179151EDC310078.049ENSORLG00020012262edc310067.583Oryzias_latipes_hni
ENSG00000179151EDC310078.049ENSORLG00015005634edc310067.976Oryzias_latipes_hsok
ENSG00000179151EDC310072.222ENSORLG00015017635-9655.664Oryzias_latipes_hsok
ENSG00000179151EDC310078.049ENSOMEG00000014026edc310068.627Oryzias_melastigma
ENSG00000179151EDC310074.074ENSOMEG00000017354EDC310057.031Oryzias_melastigma
ENSG00000179151EDC3100100.000ENSOGAG00000014441EDC310097.638Otolemur_garnettii
ENSG00000179151EDC3100100.000ENSOARG00000003476EDC310096.660Ovis_aries
ENSG00000179151EDC3100100.000ENSPPAG00000040143EDC310099.803Pan_paniscus
ENSG00000179151EDC310098.160ENSPPRG00000006257EDC310096.457Panthera_pardus
ENSG00000179151EDC310098.160ENSPTIG00000017424EDC310096.457Panthera_tigris_altaica
ENSG00000179151EDC3100100.000ENSPTRG00000007279EDC310099.803Pan_troglodytes
ENSG00000179151EDC3100100.000ENSPANG00000015997EDC310098.622Papio_anubis
ENSG00000179151EDC310076.074ENSPKIG00000019810EDC310066.406Paramormyrops_kingsleyae
ENSG00000179151EDC310083.333ENSPKIG00000004416edc310069.336Paramormyrops_kingsleyae
ENSG00000179151EDC310096.774ENSPSIG00000008474EDC310083.268Pelodiscus_sinensis
ENSG00000179151EDC310081.481ENSPMGG00000007223edc310067.123Periophthalmus_magnuspinnatus
ENSG00000179151EDC310096.296ENSPEMG00000015260Edc310096.260Peromyscus_maniculatus_bairdii
ENSG00000179151EDC310098.148ENSPCIG00000006276EDC37090.730Phascolarctos_cinereus
ENSG00000179151EDC310079.630ENSPFOG00000012204edc310069.066Poecilia_formosa
ENSG00000179151EDC310079.630ENSPLAG00000014420edc310069.066Poecilia_latipinna
ENSG00000179151EDC310079.630ENSPMEG00000023289edc310069.066Poecilia_mexicana
ENSG00000179151EDC310079.630ENSPREG00000016022edc310068.872Poecilia_reticulata
ENSG00000179151EDC3100100.000ENSPPYG00000006642EDC310098.228Pongo_abelii
ENSG00000179151EDC3100100.000ENSPCAG00000002802EDC388100.000Procavia_capensis
ENSG00000179151EDC3100100.000ENSPCOG00000013364EDC310097.244Propithecus_coquereli
ENSG00000179151EDC3100100.000ENSPVAG00000014733EDC310095.866Pteropus_vampyrus
ENSG00000179151EDC310077.778ENSPNYG00000009669EDC39958.398Pundamilia_nyererei
ENSG00000179151EDC310081.481ENSPNYG00000021797edc310067.780Pundamilia_nyererei
ENSG00000179151EDC310081.481ENSPNAG00000019657edc310069.942Pygocentrus_nattereri
ENSG00000179151EDC310096.319ENSRNOG00000019579Edc39996.238Rattus_norvegicus
ENSG00000179151EDC3100100.000ENSRBIG00000019488EDC310098.228Rhinopithecus_bieti
ENSG00000179151EDC3100100.000ENSRROG00000034959EDC310098.228Rhinopithecus_roxellana
ENSG00000179151EDC3100100.000ENSSBOG00000004896EDC310098.819Saimiri_boliviensis_boliviensis
ENSG00000179151EDC310098.148ENSSHAG00000015075EDC39591.411Sarcophilus_harrisii
ENSG00000179151EDC310081.481ENSSFOG00015002439edc310064.786Scleropages_formosus
ENSG00000179151EDC310081.481ENSSFOG00015016939edc310070.623Scleropages_formosus
ENSG00000179151EDC310072.222ENSSMAG00000010176-9956.538Scophthalmus_maximus
ENSG00000179151EDC310078.659ENSSMAG00000010695edc310069.548Scophthalmus_maximus
ENSG00000179151EDC310077.778ENSSDUG00000007671EDC310058.949Seriola_dumerili
ENSG00000179151EDC310079.630ENSSDUG00000021844edc310069.216Seriola_dumerili
ENSG00000179151EDC310079.630ENSSLDG00000022046edc310069.216Seriola_lalandi_dorsalis
ENSG00000179151EDC310079.630ENSSLDG00000008406-10078.947Seriola_lalandi_dorsalis
ENSG00000179151EDC310093.750ENSSARG00000003907EDC38095.565Sorex_araneus
ENSG00000179151EDC310098.148ENSSPUG00000008232EDC310088.386Sphenodon_punctatus
ENSG00000179151EDC310077.778ENSSPAG00000020327EDC310057.588Stegastes_partitus
ENSG00000179151EDC310081.481ENSSPAG00000010009edc310070.138Stegastes_partitus
ENSG00000179151EDC3100100.000ENSSSCG00000001903EDC310097.441Sus_scrofa
ENSG00000179151EDC310098.148ENSTGUG00000004007EDC310088.189Taeniopygia_guttata
ENSG00000179151EDC310078.049ENSTRUG00000017078edc310070.138Takifugu_rubripes
ENSG00000179151EDC310077.778ENSTNIG00000016047edc310068.164Tetraodon_nigroviridis
ENSG00000179151EDC310098.148ENSTTRG00000007990EDC310097.244Tursiops_truncatus
ENSG00000179151EDC310098.148ENSUAMG00000002788-10098.182Ursus_americanus
ENSG00000179151EDC310098.160ENSUAMG00000026710-10096.260Ursus_americanus
ENSG00000179151EDC310098.160ENSUMAG00000005006EDC39696.260Ursus_maritimus
ENSG00000179151EDC394100.000ENSVPAG00000003499-7987.037Vicugna_pacos
ENSG00000179151EDC3100100.000ENSVVUG00000018601EDC310096.654Vulpes_vulpes
ENSG00000179151EDC310082.530ENSXETG00000010622edc39983.908Xenopus_tropicalis
ENSG00000179151EDC310079.630ENSXMAG00000007377edc310069.155Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000932P-body21873635.IBAComponent
GO:0003729mRNA binding21873635.IBAFunction
GO:0005515protein binding16364915.19966221.20584987.21516116.25036637.25416956.26496610.27107012.IPIFunction
GO:0005829cytosol-TASComponent
GO:0016020membrane19946888.HDAComponent
GO:0031087deadenylation-independent decapping of nuclear-transcribed mRNA21873635.IBAProcess
GO:0033962cytoplasmic mRNA processing body assembly21873635.IBAProcess
GO:0036464cytoplasmic ribonucleoprotein granule-IDAComponent
GO:0042802identical protein binding18678652.25416956.IPIFunction
GO:0043928exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay-TASProcess
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic-IEAProcess
GO:1990174phosphodiesterase decapping endonuclease activity25701870.IMPFunction

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