EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000180098 (Gene tree)
Gene ID
54952
Gene Symbol
TRNAU1AP
Alias
SECP43|FLJ20503|TRSPAP1
Full Name
tRNA selenocysteine 1 associated protein 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
25,529 bases
Position
chr1:28,553,017-28,578,545
Accession
30813
RBP type
canonical RBP
Summary
(TRNA Selenocysteine 1 Associated Protein 1) is a Protein Coding gene. Diseases associated with TRNAU1AP include Diverticulitis. Among its related pathways are Selenium Metabolism and Selenoproteins. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is NCL.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000362936RRM_1PF00076.228.3e-2712
ENSP00000362936RRM_1PF00076.228.3e-2722
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
10606267Identification of a protein component of a mammalian tRNA(Sec) complex implicated in the decoding of UGA as selenocysteine.RNA1999 DecDing F-
28414460Analysis of Novel Interactions between Components of the Selenocysteine Biosynthesis Pathway, SEPHS1, SEPHS2, SEPSECS, and SECp43.Biochemistry2017 May 2Oudouhou Fdoi: 10.1021/acs.biochem.6b01116
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000484775TRNAU1AP-2061008--- (aa)--
ENST00000495215TRNAU1AP-208483--- (aa)--
ENST00000495995TRNAU1AP-2092040--- (aa)--
ENST00000411406TRNAU1AP-202450--- (aa)--
ENST00000373830TRNAU1AP-2011799XM_017001542ENSP00000362936287 (aa)XP_016857031Q9NX07
ENST00000497790TRNAU1AP-210573--- (aa)--
ENST00000464093TRNAU1AP-2031632--- (aa)--
ENST00000491577TRNAU1AP-2071610--- (aa)--
ENST00000464880TRNAU1AP-204609--- (aa)--
ENST00000480930TRNAU1AP-2051132NR_003109-- (aa)--
Gene Model
Click here to download ENSG00000180098's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000180098's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000180098TRNAU1AP6731.034ENSG00000070756PABPC19241.772
ENSG00000180098TRNAU1AP7132.203ENSG00000151846PABPC35832.203
ENSG00000180098TRNAU1AP6032.386ENSG00000151923TIAL19234.375
ENSG00000180098TRNAU1AP5830.409ENSG00000174740PABPC57430.508
ENSG00000180098TRNAU1AP7830.198ENSG00000116001TIA19032.414
ENSG00000180098TRNAU1AP6230.667ENSG00000143368SF3B47330.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000180098TRNAU1AP9858.416ENSAPOG00000007148TRNAU1AP9858.416Acanthochromis_polyacanthus
ENSG00000180098TRNAU1AP10098.955ENSAMEG00000011367TRNAU1AP10098.955Ailuropoda_melanoleuca
ENSG00000180098TRNAU1AP9170.115ENSACIG00000004161trnau1apa9370.115Amphilophus_citrinellus
ENSG00000180098TRNAU1AP9858.416ENSAOCG00000008056trnau1apa9858.416Amphiprion_ocellaris
ENSG00000180098TRNAU1AP9858.416ENSAPEG00000008868trnau1apa9858.586Amphiprion_percula
ENSG00000180098TRNAU1AP9858.199ENSATEG00000012140trnau1apa9856.270Anabas_testudineus
ENSG00000180098TRNAU1AP9493.704ENSAPLG00000002606TRNAU1AP9993.704Anas_platyrhynchos
ENSG00000180098TRNAU1AP6752.083ENSACAG00000004205-7352.083Anolis_carolinensis
ENSG00000180098TRNAU1AP9975.874ENSACAG00000003995-9975.874Anolis_carolinensis
ENSG00000180098TRNAU1AP100100.000ENSANAG00000018976TRNAU1AP100100.000Aotus_nancymaae
ENSG00000180098TRNAU1AP9859.000ENSACLG00000018515trnau1apa9860.403Astatotilapia_calliptera
ENSG00000180098TRNAU1AP9565.556ENSAMXG00000029240-9865.556Astyanax_mexicanus
ENSG00000180098TRNAU1AP9557.762ENSAMXG00000013750trnau1apa9057.762Astyanax_mexicanus
ENSG00000180098TRNAU1AP10099.652ENSBTAG00000010393TRNAU1AP10099.652Bos_taurus
ENSG00000180098TRNAU1AP100100.000ENSCJAG00000009717TRNAU1AP100100.000Callithrix_jacchus
ENSG00000180098TRNAU1AP10099.652ENSCAFG00000011735TRNAU1AP10099.652Canis_familiaris
ENSG00000180098TRNAU1AP10099.652ENSCAFG00020023584TRNAU1AP10099.652Canis_lupus_dingo
ENSG00000180098TRNAU1AP10099.303ENSCHIG00000023215TRNAU1AP10099.303Capra_hircus
ENSG00000180098TRNAU1AP10099.652ENSTSYG00000003506TRNAU1AP10099.652Carlito_syrichta
ENSG00000180098TRNAU1AP10099.303ENSCPOG00000001925TRNAU1AP10099.303Cavia_porcellus
ENSG00000180098TRNAU1AP100100.000ENSCCAG00000037506TRNAU1AP100100.000Cebus_capucinus
ENSG00000180098TRNAU1AP10099.652ENSCATG00000044617TRNAU1AP10099.652Cercocebus_atys
ENSG00000180098TRNAU1AP10098.606ENSCLAG00000008223TRNAU1AP10098.606Chinchilla_lanigera
ENSG00000180098TRNAU1AP10099.652ENSCSAG00000001014TRNAU1AP10099.652Chlorocebus_sabaeus
ENSG00000180098TRNAU1AP9594.891ENSCPBG00000000121TRNAU1AP10094.891Chrysemys_picta_bellii
ENSG00000180098TRNAU1AP5951.462ENSCSAVG00000011781-9051.462Ciona_savignyi
ENSG00000180098TRNAU1AP10088.153ENSCANG00000041949TRNAU1AP100100.000Colobus_angolensis_palliatus
ENSG00000180098TRNAU1AP10099.303ENSCGRG00001004713Trnau1ap10099.303Cricetulus_griseus_chok1gshd
ENSG00000180098TRNAU1AP10099.303ENSCGRG00000014532Trnau1ap10099.303Cricetulus_griseus_crigri
ENSG00000180098TRNAU1AP9858.333ENSCSEG00000006663trnau1apa9556.954Cynoglossus_semilaevis
ENSG00000180098TRNAU1AP9757.823ENSCVAG00000018069trnau1apa9459.341Cyprinodon_variegatus
ENSG00000180098TRNAU1AP9553.571ENSDARG00000101323trnau1apa8851.957Danio_rerio
ENSG00000180098TRNAU1AP6777.604ENSDNOG00000047959-9778.075Dasypus_novemcinctus
ENSG00000180098TRNAU1AP10099.652ENSDNOG00000033009TRNAU1AP10099.652Dasypus_novemcinctus
ENSG00000180098TRNAU1AP9991.608ENSDORG00000006349Trnau1ap100100.000Dipodomys_ordii
ENSG00000180098TRNAU1AP9638.344FBgn0031607CG154405152.023Drosophila_melanogaster
ENSG00000180098TRNAU1AP8594.694ENSETEG00000012594TRNAU1AP10094.694Echinops_telfairi
ENSG00000180098TRNAU1AP5559.341ENSEBUG00000006349-6059.341Eptatretus_burgeri
ENSG00000180098TRNAU1AP100100.000ENSEASG00005010062TRNAU1AP100100.000Equus_asinus_asinus
ENSG00000180098TRNAU1AP100100.000ENSECAG00000012980TRNAU1AP100100.000Equus_caballus
ENSG00000180098TRNAU1AP9670.526ENSELUG00000022790-9452.055Esox_lucius
ENSG00000180098TRNAU1AP9663.066ENSELUG00000017686trnau1apa9462.718Esox_lucius
ENSG00000180098TRNAU1AP100100.000ENSFCAG00000013401TRNAU1AP100100.000Felis_catus
ENSG00000180098TRNAU1AP9593.796ENSFALG00000001371TRNAU1AP10093.796Ficedula_albicollis
ENSG00000180098TRNAU1AP10098.606ENSFDAG00000018599TRNAU1AP10098.606Fukomys_damarensis
ENSG00000180098TRNAU1AP7960.816ENSFHEG00000018232trnau1apa8656.757Fundulus_heteroclitus
ENSG00000180098TRNAU1AP9553.846ENSGMOG00000016508trnau1apa9354.930Gadus_morhua
ENSG00000180098TRNAU1AP6849.296ENSGALG00000012721C2H6orf529544.788Gallus_gallus
ENSG00000180098TRNAU1AP10093.380ENSGALG00000001310-10093.380Gallus_gallus
ENSG00000180098TRNAU1AP7858.403ENSGAFG00000004928trnau1apa9059.244Gambusia_affinis
ENSG00000180098TRNAU1AP9860.274ENSGACG00000001443trnau1apa9559.932Gasterosteus_aculeatus
ENSG00000180098TRNAU1AP9595.255ENSGAGG00000004940TRNAU1AP10095.255Gopherus_agassizii
ENSG00000180098TRNAU1AP100100.000ENSGGOG00000003511TRNAU1AP100100.000Gorilla_gorilla
ENSG00000180098TRNAU1AP9858.033ENSHBUG00000002510trnau1apa9859.406Haplochromis_burtoni
ENSG00000180098TRNAU1AP10098.606ENSHGLG00000010380TRNAU1AP10098.606Heterocephalus_glaber_female
ENSG00000180098TRNAU1AP10096.167ENSHGLG00100012699TRNAU1AP10096.167Heterocephalus_glaber_male
ENSG00000180098TRNAU1AP9957.096ENSHCOG00000014770trnau1apa9755.195Hippocampus_comes
ENSG00000180098TRNAU1AP100100.000ENSSTOG00000000079TRNAU1AP100100.000Ictidomys_tridecemlineatus
ENSG00000180098TRNAU1AP10098.955ENSJJAG00000010128Trnau1ap10098.955Jaculus_jaculus
ENSG00000180098TRNAU1AP9560.208ENSKMAG00000001230trnau1apa9358.478Kryptolebias_marmoratus
ENSG00000180098TRNAU1AP9560.751ENSLBEG00000011683trnau1apa9359.864Labrus_bergylta
ENSG00000180098TRNAU1AP9972.632ENSLACG00000005541TRNAU1AP9972.632Latimeria_chalumnae
ENSG00000180098TRNAU1AP9972.028ENSLOCG00000004041trnau1apa9970.979Lepisosteus_oculatus
ENSG00000180098TRNAU1AP10099.652ENSLAFG00000007628TRNAU1AP10099.652Loxodonta_africana
ENSG00000180098TRNAU1AP10099.652ENSMFAG00000043751TRNAU1AP10099.652Macaca_fascicularis
ENSG00000180098TRNAU1AP10099.652ENSMMUG00000006561TRNAU1AP10099.652Macaca_mulatta
ENSG00000180098TRNAU1AP10099.652ENSMNEG00000044201TRNAU1AP10099.652Macaca_nemestrina
ENSG00000180098TRNAU1AP10099.652ENSMLEG00000015649TRNAU1AP10099.652Mandrillus_leucophaeus
ENSG00000180098TRNAU1AP9858.958ENSMAMG00000001247trnau1apa9858.824Mastacembelus_armatus
ENSG00000180098TRNAU1AP9859.000ENSMZEG00005017722trnau1apa9860.403Maylandia_zebra
ENSG00000180098TRNAU1AP9793.165ENSMGAG00000002105TRNAU1AP10093.165Meleagris_gallopavo
ENSG00000180098TRNAU1AP10099.652ENSMICG00000008386TRNAU1AP10099.652Microcebus_murinus
ENSG00000180098TRNAU1AP10098.955ENSMOCG00000011189Trnau1ap10098.955Microtus_ochrogaster
ENSG00000180098TRNAU1AP9558.088ENSMMOG00000012107trnau1apa9556.429Mola_mola
ENSG00000180098TRNAU1AP10095.470ENSMODG00000010927TRNAU1AP10095.470Monodelphis_domestica
ENSG00000180098TRNAU1AP9661.092ENSMALG00000016778trnau1apa9458.362Monopterus_albus
ENSG00000180098TRNAU1AP10098.955MGP_CAROLIEiJ_G0026563Trnau1ap100100.000Mus_caroli
ENSG00000180098TRNAU1AP10098.955ENSMUSG00000028898Trnau1ap100100.000Mus_musculus
ENSG00000180098TRNAU1AP10099.303MGP_PahariEiJ_G0028896Trnau1ap100100.000Mus_pahari
ENSG00000180098TRNAU1AP10098.606MGP_SPRETEiJ_G0027544Trnau1ap100100.000Mus_spretus
ENSG00000180098TRNAU1AP10099.303ENSMPUG00000015511TRNAU1AP10099.303Mustela_putorius_furo
ENSG00000180098TRNAU1AP10099.652ENSMLUG00000012586TRNAU1AP10099.652Myotis_lucifugus
ENSG00000180098TRNAU1AP10097.561ENSNGAG00000015881Trnau1ap10097.561Nannospalax_galili
ENSG00000180098TRNAU1AP9956.997ENSNBRG00000001758trnau1apa9856.997Neolamprologus_brichardi
ENSG00000180098TRNAU1AP100100.000ENSNLEG00000009822TRNAU1AP100100.000Nomascus_leucogenys
ENSG00000180098TRNAU1AP9794.245ENSMEUG00000006117TRNAU1AP10094.245Notamacropus_eugenii
ENSG00000180098TRNAU1AP7098.182ENSOPRG00000007084-6998.182Ochotona_princeps
ENSG00000180098TRNAU1AP10098.955ENSODEG00000002970TRNAU1AP10098.955Octodon_degus
ENSG00000180098TRNAU1AP8059.671ENSONIG00000004715trnau1apa9559.917Oreochromis_niloticus
ENSG00000180098TRNAU1AP9974.476ENSOANG00000005325-9974.476Ornithorhynchus_anatinus
ENSG00000180098TRNAU1AP8977.344ENSOCUG00000006834-10075.391Oryctolagus_cuniculus
ENSG00000180098TRNAU1AP10077.778ENSOCUG00000002353-10077.778Oryctolagus_cuniculus
ENSG00000180098TRNAU1AP10097.909ENSOCUG00000011704-10097.909Oryctolagus_cuniculus
ENSG00000180098TRNAU1AP9858.865ENSORLG00000010428trnau1apa9557.042Oryzias_latipes
ENSG00000180098TRNAU1AP9858.020ENSORLG00020000926trnau1ap9556.849Oryzias_latipes_hni
ENSG00000180098TRNAU1AP9858.020ENSORLG00015009858trnau1ap9556.849Oryzias_latipes_hsok
ENSG00000180098TRNAU1AP9859.044ENSOMEG00000007873trnau1apa9556.164Oryzias_melastigma
ENSG00000180098TRNAU1AP10099.652ENSOGAG00000002274TRNAU1AP10099.652Otolemur_garnettii
ENSG00000180098TRNAU1AP10099.303ENSOARG00000002843TRNAU1AP10099.303Ovis_aries
ENSG00000180098TRNAU1AP100100.000ENSPPAG00000033927TRNAU1AP100100.000Pan_paniscus
ENSG00000180098TRNAU1AP100100.000ENSPPRG00000004416TRNAU1AP100100.000Panthera_pardus
ENSG00000180098TRNAU1AP100100.000ENSPTIG00000016677TRNAU1AP100100.000Panthera_tigris_altaica
ENSG00000180098TRNAU1AP9381.181ENSPTRG00000000434-9779.705Pan_troglodytes
ENSG00000180098TRNAU1AP10099.652ENSPANG00000016019TRNAU1AP10099.652Papio_anubis
ENSG00000180098TRNAU1AP9474.468ENSPKIG00000022205-9377.528Paramormyrops_kingsleyae
ENSG00000180098TRNAU1AP9559.717ENSPKIG00000015511trnau1apa9257.951Paramormyrops_kingsleyae
ENSG00000180098TRNAU1AP9595.255ENSPSIG00000006864TRNAU1AP10095.255Pelodiscus_sinensis
ENSG00000180098TRNAU1AP9461.397ENSPMGG00000023893trnau1apa9160.517Periophthalmus_magnuspinnatus
ENSG00000180098TRNAU1AP10098.955ENSPEMG00000007877Trnau1ap10098.955Peromyscus_maniculatus_bairdii
ENSG00000180098TRNAU1AP6060.227ENSPMAG00000000592trnau1apa9760.227Petromyzon_marinus
ENSG00000180098TRNAU1AP7860.987ENSPMAG00000005934trnau1apa9660.185Petromyzon_marinus
ENSG00000180098TRNAU1AP9556.944ENSPFOG00000008100trnau1apa9357.639Poecilia_formosa
ENSG00000180098TRNAU1AP9156.679ENSPLAG00000010236trnau1apa9357.401Poecilia_latipinna
ENSG00000180098TRNAU1AP9655.862ENSPMEG00000016387trnau1apa9256.552Poecilia_mexicana
ENSG00000180098TRNAU1AP9353.903ENSPREG00000019821trnau1apa8664.286Poecilia_reticulata
ENSG00000180098TRNAU1AP10078.397ENSPPYG00000001639-10086.822Pongo_abelii
ENSG00000180098TRNAU1AP9882.562ENSPCOG00000023470-10082.562Propithecus_coquereli
ENSG00000180098TRNAU1AP10099.652ENSPCOG00000027712-10099.652Propithecus_coquereli
ENSG00000180098TRNAU1AP100100.000ENSPVAG00000017214TRNAU1AP100100.000Pteropus_vampyrus
ENSG00000180098TRNAU1AP9858.033ENSPNYG00000010130trnau1apa9859.406Pundamilia_nyererei
ENSG00000180098TRNAU1AP9555.124ENSPNAG00000024905trnau1apa9154.317Pygocentrus_nattereri
ENSG00000180098TRNAU1AP9490.775ENSRNOG00000055344Trnau1ap9290.775Rattus_norvegicus
ENSG00000180098TRNAU1AP100100.000ENSRBIG00000029083TRNAU1AP100100.000Rhinopithecus_bieti
ENSG00000180098TRNAU1AP100100.000ENSRROG00000029128TRNAU1AP100100.000Rhinopithecus_roxellana
ENSG00000180098TRNAU1AP100100.000ENSSBOG00000021299TRNAU1AP100100.000Saimiri_boliviensis_boliviensis
ENSG00000180098TRNAU1AP10094.774ENSSHAG00000008108TRNAU1AP10094.774Sarcophilus_harrisii
ENSG00000180098TRNAU1AP9853.722ENSSMAG00000020851trnau1apa9857.049Scophthalmus_maximus
ENSG00000180098TRNAU1AP9658.844ENSSDUG00000011734trnau1apa9457.483Seriola_dumerili
ENSG00000180098TRNAU1AP9646.545ENSSLDG00000012101trnau1apa9250.538Seriola_lalandi_dorsalis
ENSG00000180098TRNAU1AP9798.561ENSSARG00000007536TRNAU1AP10098.561Sorex_araneus
ENSG00000180098TRNAU1AP9986.364ENSSPUG00000010400-10086.364Sphenodon_punctatus
ENSG00000180098TRNAU1AP6182.386ENSSPUG00000010415-10082.386Sphenodon_punctatus
ENSG00000180098TRNAU1AP9858.689ENSSPAG00000005029trnau1apa9857.980Stegastes_partitus
ENSG00000180098TRNAU1AP100100.000ENSSSCG00000030284TRNAU1AP100100.000Sus_scrofa
ENSG00000180098TRNAU1AP6853.061ENSTGUG00000005908-10053.061Taeniopygia_guttata
ENSG00000180098TRNAU1AP9794.245ENSTGUG00000000735-10094.245Taeniopygia_guttata
ENSG00000180098TRNAU1AP9859.136ENSTRUG00000003352trnau1apa9858.472Takifugu_rubripes
ENSG00000180098TRNAU1AP9857.096ENSTNIG00000006129trnau1apa9857.096Tetraodon_nigroviridis
ENSG00000180098TRNAU1AP8588.163ENSTBEG00000008049-10088.163Tupaia_belangeri
ENSG00000180098TRNAU1AP10099.652ENSTTRG00000001854TRNAU1AP10099.652Tursiops_truncatus
ENSG00000180098TRNAU1AP9599.635ENSUAMG00000008789TRNAU1AP10099.635Ursus_americanus
ENSG00000180098TRNAU1AP10099.303ENSUMAG00000011068TRNAU1AP10099.303Ursus_maritimus
ENSG00000180098TRNAU1AP10089.041ENSVPAG00000006778TRNAU1AP10089.041Vicugna_pacos
ENSG00000180098TRNAU1AP9997.887ENSVVUG00000012518TRNAU1AP9397.887Vulpes_vulpes
ENSG00000180098TRNAU1AP9555.903ENSXMAG00000017361trnau1apa9357.639Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001514selenocysteine incorporation-ISSProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005634nucleus-ISSComponent
GO:0005737cytoplasm-IEAComponent

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