EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000181817 (Gene tree)
Gene ID: 84967
Gene Symbol: LSM10
Alias: MGC15749
Full Name: LSM10, U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 6,722 bases
Position: chr1:36,391,238-36,397,959
Accession: 17562
RBP type: canonical RBP
Summary: (LSM10, U7 Small Nuclear RNA Associated) is a Protein Coding gene. Among its related pathways are RNA Polymerase II Transcription Termination and Tat-mediated elongation of the HIV-1 transcript. Gene Ontology (GO) annotations related to this gene include histone pre-mRNA DCP binding.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000319341	LSM	PF01423.22	3.4e-11	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000315732	LSM10-201	850	-	ENSP00000319341	123 (aa)	-	Q969L4
ENST00000489912	LSM10-203	401	-	-	- (aa)	-	-
ENST00000476041	LSM10-202	1006	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000181817's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000181817's network

* RBP PPI network refers to all genes directly bind to RBP

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000181817	LSM10	55	30.000	ENSG00000204392	LSM2	74	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000181817	LSM10	100	89.431	ENSAMEG00000019854	LSM10	100	89.431	Ailuropoda_melanoleuca
ENSG00000181817	LSM10	95	66.667	ENSACIG00000015420	oscp1a	77	66.667	Amphilophus_citrinellus
ENSG00000181817	LSM10	96	67.797	ENSAOCG00000015618	LSM10	98	67.797	Amphiprion_ocellaris
ENSG00000181817	LSM10	90	65.766	ENSAOCG00000015607	LSM10	86	65.766	Amphiprion_ocellaris
ENSG00000181817	LSM10	96	67.797	ENSAOCG00000014654	-	98	67.797	Amphiprion_ocellaris
ENSG00000181817	LSM10	90	65.766	ENSAPEG00000021851	LSM10	86	65.766	Amphiprion_percula
ENSG00000181817	LSM10	96	67.797	ENSAPEG00000021845	-	98	67.797	Amphiprion_percula
ENSG00000181817	LSM10	99	60.656	ENSATEG00000006310	oscp1a	88	60.656	Anabas_testudineus
ENSG00000181817	LSM10	95	70.085	ENSACAG00000001231	LSM10	95	70.085	Anolis_carolinensis
ENSG00000181817	LSM10	100	97.561	ENSANAG00000018759	-	100	97.561	Aotus_nancymaae
ENSG00000181817	LSM10	99	95.902	ENSANAG00000031489	-	100	95.902	Aotus_nancymaae
ENSG00000181817	LSM10	96	66.102	ENSACLG00000004728	oscp1a	96	66.102	Astatotilapia_calliptera
ENSG00000181817	LSM10	96	66.102	ENSAMXG00000025301	oscp1a	98	66.102	Astyanax_mexicanus
ENSG00000181817	LSM10	99	90.164	ENSBTAG00000024096	LSM10	100	90.164	Bos_taurus
ENSG00000181817	LSM10	100	96.748	ENSCJAG00000044880	LSM10	100	96.748	Callithrix_jacchus
ENSG00000181817	LSM10	100	91.057	ENSCAFG00000003382	LSM10	100	91.057	Canis_familiaris
ENSG00000181817	LSM10	100	91.057	ENSCAFG00020008920	LSM10	100	91.057	Canis_lupus_dingo
ENSG00000181817	LSM10	99	90.164	ENSCHIG00000009398	LSM10	100	90.164	Capra_hircus
ENSG00000181817	LSM10	100	91.870	ENSCAPG00000012567	LSM10	100	91.870	Cavia_aperea
ENSG00000181817	LSM10	100	91.870	ENSCPOG00000039302	LSM10	100	91.870	Cavia_porcellus
ENSG00000181817	LSM10	100	97.561	ENSCCAG00000018913	-	100	97.561	Cebus_capucinus
ENSG00000181817	LSM10	99	94.262	ENSCCAG00000008378	-	99	94.262	Cebus_capucinus
ENSG00000181817	LSM10	100	97.561	ENSCATG00000006589	LSM10	100	97.561	Cercocebus_atys
ENSG00000181817	LSM10	100	93.496	ENSCLAG00000008633	LSM10	100	93.496	Chinchilla_lanigera
ENSG00000181817	LSM10	100	97.561	ENSCSAG00000000134	LSM10	100	97.561	Chlorocebus_sabaeus
ENSG00000181817	LSM10	100	93.600	ENSCHOG00000008615	LSM10	100	93.600	Choloepus_hoffmanni
ENSG00000181817	LSM10	96	30.508	ENSCSAVG00000001896	-	94	30.508	Ciona_savignyi
ENSG00000181817	LSM10	100	97.561	ENSCANG00000019928	LSM10	100	97.561	Colobus_angolensis_palliatus
ENSG00000181817	LSM10	93	81.034	ENSCGRG00001022673	-	93	81.034	Cricetulus_griseus_chok1gshd
ENSG00000181817	LSM10	99	89.344	ENSCGRG00001004317	-	100	89.344	Cricetulus_griseus_chok1gshd
ENSG00000181817	LSM10	99	89.344	ENSCGRG00000014935	-	100	89.344	Cricetulus_griseus_crigri
ENSG00000181817	LSM10	93	81.034	ENSCGRG00000015514	-	93	81.034	Cricetulus_griseus_crigri
ENSG00000181817	LSM10	98	61.983	ENSCSEG00000010374	oscp1a	81	61.983	Cynoglossus_semilaevis
ENSG00000181817	LSM10	98	64.167	ENSCVAG00000001536	oscp1a	91	64.167	Cyprinodon_variegatus
ENSG00000181817	LSM10	64	72.152	ENSDARG00000109563	CABZ01074453.1	93	72.152	Danio_rerio
ENSG00000181817	LSM10	98	70.000	ENSDARG00000101222	oscp1a	99	70.000	Danio_rerio
ENSG00000181817	LSM10	98	94.215	ENSDNOG00000036662	LSM10	98	94.215	Dasypus_novemcinctus
ENSG00000181817	LSM10	100	91.057	ENSDORG00000007579	Lsm10	100	91.057	Dipodomys_ordii
ENSG00000181817	LSM10	85	31.193	FBgn0033554	Lsm10	77	31.193	Drosophila_melanogaster
ENSG00000181817	LSM10	100	87.805	ENSETEG00000005703	LSM10	100	87.805	Echinops_telfairi
ENSG00000181817	LSM10	95	52.991	ENSEBUG00000001312	oscp1a	96	52.991	Eptatretus_burgeri
ENSG00000181817	LSM10	100	91.057	ENSEASG00005012194	LSM10	100	91.057	Equus_asinus_asinus
ENSG00000181817	LSM10	100	91.870	ENSECAG00000005071	LSM10	100	91.870	Equus_caballus
ENSG00000181817	LSM10	100	89.431	ENSEEUG00000012032	LSM10	100	89.431	Erinaceus_europaeus
ENSG00000181817	LSM10	98	67.500	ENSELUG00000007452	oscp1a	98	67.500	Esox_lucius
ENSG00000181817	LSM10	95	72.650	ENSFALG00000000851	LSM10	95	72.650	Ficedula_albicollis
ENSG00000181817	LSM10	100	89.431	ENSFDAG00000021056	LSM10	100	89.431	Fukomys_damarensis
ENSG00000181817	LSM10	89	66.364	ENSFHEG00000001058	oscp1a	95	66.364	Fundulus_heteroclitus
ENSG00000181817	LSM10	87	64.486	ENSGMOG00000019832	oscp1a	90	64.486	Gadus_morhua
ENSG00000181817	LSM10	100	72.358	ENSGALG00000002127	LSM10	100	72.358	Gallus_gallus
ENSG00000181817	LSM10	89	60.550	ENSGAFG00000016445	oscp1a	85	60.550	Gambusia_affinis
ENSG00000181817	LSM10	96	62.712	ENSGACG00000002329	oscp1a	97	62.712	Gasterosteus_aculeatus
ENSG00000181817	LSM10	100	72.358	ENSGAGG00000024848	LSM10	100	72.358	Gopherus_agassizii
ENSG00000181817	LSM10	100	98.374	ENSGGOG00000003556	LSM10	100	98.374	Gorilla_gorilla
ENSG00000181817	LSM10	96	66.102	ENSHBUG00000001722	oscp1a	96	66.102	Haplochromis_burtoni
ENSG00000181817	LSM10	100	92.683	ENSHGLG00000011625	LSM10	100	92.683	Heterocephalus_glaber_female
ENSG00000181817	LSM10	100	92.683	ENSHGLG00100001769	LSM10	100	92.683	Heterocephalus_glaber_male
ENSG00000181817	LSM10	85	66.667	ENSIPUG00000005808	oscp1a	91	66.667	Ictalurus_punctatus
ENSG00000181817	LSM10	100	90.244	ENSSTOG00000000606	LSM10	100	90.244	Ictidomys_tridecemlineatus
ENSG00000181817	LSM10	96	63.559	ENSKMAG00000012143	oscp1a	98	63.559	Kryptolebias_marmoratus
ENSG00000181817	LSM10	98	62.500	ENSLBEG00000017764	oscp1a	98	62.500	Labrus_bergylta
ENSG00000181817	LSM10	100	72.358	ENSLACG00000015904	LSM10	95	72.358	Latimeria_chalumnae
ENSG00000181817	LSM10	98	70.833	ENSLOCG00000018277	oscp1a	98	70.833	Lepisosteus_oculatus
ENSG00000181817	LSM10	100	91.057	ENSLAFG00000009600	LSM10	100	91.057	Loxodonta_africana
ENSG00000181817	LSM10	100	97.561	ENSMFAG00000009115	LSM10	100	97.561	Macaca_fascicularis
ENSG00000181817	LSM10	100	97.561	ENSMMUG00000017338	LSM10	100	97.561	Macaca_mulatta
ENSG00000181817	LSM10	100	97.561	ENSMNEG00000020023	LSM10	100	97.561	Macaca_nemestrina
ENSG00000181817	LSM10	100	97.561	ENSMLEG00000025150	LSM10	100	97.561	Mandrillus_leucophaeus
ENSG00000181817	LSM10	98	64.463	ENSMAMG00000004427	oscp1a	99	64.463	Mastacembelus_armatus
ENSG00000181817	LSM10	96	66.102	ENSMZEG00005026307	oscp1a	96	66.102	Maylandia_zebra
ENSG00000181817	LSM10	100	71.545	ENSMGAG00000015707	LSM10	100	71.545	Meleagris_gallopavo
ENSG00000181817	LSM10	98	90.833	ENSMAUG00000016624	Lsm10	98	90.833	Mesocricetus_auratus
ENSG00000181817	LSM10	98	90.833	ENSMOCG00000021943	Lsm10	98	90.833	Microtus_ochrogaster
ENSG00000181817	LSM10	90	66.667	ENSMMOG00000013597	oscp1a	83	66.667	Mola_mola
ENSG00000181817	LSM10	100	81.301	ENSMODG00000023328	LSM10	100	81.301	Monodelphis_domestica
ENSG00000181817	LSM10	58	57.895	ENSMALG00000012661	oscp1a	60	57.895	Monopterus_albus
ENSG00000181817	LSM10	98	90.000	MGP_CAROLIEiJ_G0026467	Lsm10	100	89.247	Mus_caroli
ENSG00000181817	LSM10	98	90.833	ENSMUSG00000050188	Lsm10	100	90.323	Mus_musculus
ENSG00000181817	LSM10	98	90.833	MGP_PahariEiJ_G0028798	Lsm10	100	90.323	Mus_pahari
ENSG00000181817	LSM10	98	90.833	MGP_SPRETEiJ_G0027446	Lsm10	100	90.323	Mus_spretus
ENSG00000181817	LSM10	100	91.057	ENSMPUG00000018593	LSM10	100	91.057	Mustela_putorius_furo
ENSG00000181817	LSM10	100	87.805	ENSMLUG00000023895	LSM10	100	87.805	Myotis_lucifugus
ENSG00000181817	LSM10	100	91.057	ENSNGAG00000015011	Lsm10	100	91.057	Nannospalax_galili
ENSG00000181817	LSM10	96	66.949	ENSNBRG00000014306	oscp1a	96	66.949	Neolamprologus_brichardi
ENSG00000181817	LSM10	100	98.374	ENSNLEG00000033754	LSM10	100	98.374	Nomascus_leucogenys
ENSG00000181817	LSM10	100	81.301	ENSMEUG00000006313	LSM10	100	81.301	Notamacropus_eugenii
ENSG00000181817	LSM10	100	91.057	ENSOPRG00000001699	LSM10	100	91.057	Ochotona_princeps
ENSG00000181817	LSM10	100	93.496	ENSODEG00000019161	LSM10	100	93.496	Octodon_degus
ENSG00000181817	LSM10	96	66.949	ENSONIG00000020904	oscp1a	97	66.949	Oreochromis_niloticus
ENSG00000181817	LSM10	100	73.984	ENSOANG00000002066	LSM10	100	73.984	Ornithorhynchus_anatinus
ENSG00000181817	LSM10	100	90.244	ENSOCUG00000005333	LSM10	100	90.244	Oryctolagus_cuniculus
ENSG00000181817	LSM10	96	65.254	ENSORLG00000009504	oscp1a	98	65.254	Oryzias_latipes
ENSG00000181817	LSM10	96	65.254	ENSORLG00020016201	oscp1a	98	65.254	Oryzias_latipes_hni
ENSG00000181817	LSM10	96	65.254	ENSORLG00015007794	oscp1a	97	65.254	Oryzias_latipes_hsok
ENSG00000181817	LSM10	100	89.431	ENSOGAG00000002653	LSM10	100	89.431	Otolemur_garnettii
ENSG00000181817	LSM10	99	90.164	ENSOARG00000009596	LSM10	100	90.164	Ovis_aries
ENSG00000181817	LSM10	100	100.000	ENSPPAG00000023465	LSM10	100	100.000	Pan_paniscus
ENSG00000181817	LSM10	100	91.870	ENSPPRG00000014619	LSM10	100	91.870	Panthera_pardus
ENSG00000181817	LSM10	100	91.870	ENSPTIG00000004613	LSM10	100	91.870	Panthera_tigris_altaica
ENSG00000181817	LSM10	100	100.000	ENSPTRG00000000539	LSM10	100	100.000	Pan_troglodytes
ENSG00000181817	LSM10	100	97.561	ENSPANG00000023172	LSM10	100	97.561	Papio_anubis
ENSG00000181817	LSM10	100	64.228	ENSPKIG00000003728	oscp1a	99	64.228	Paramormyrops_kingsleyae
ENSG00000181817	LSM10	100	70.732	ENSPSIG00000000590	LSM10	100	70.732	Pelodiscus_sinensis
ENSG00000181817	LSM10	62	63.158	ENSPMGG00000015718	oscp1a	99	63.158	Periophthalmus_magnuspinnatus
ENSG00000181817	LSM10	84	85.437	ENSPCIG00000014865	LSM10	76	85.437	Phascolarctos_cinereus
ENSG00000181817	LSM10	91	66.071	ENSPFOG00000020490	oscp1a	95	66.071	Poecilia_formosa
ENSG00000181817	LSM10	91	66.071	ENSPLAG00000016537	oscp1a	85	66.071	Poecilia_latipinna
ENSG00000181817	LSM10	93	65.789	ENSPMEG00000000174	oscp1a	98	65.789	Poecilia_mexicana
ENSG00000181817	LSM10	96	64.407	ENSPREG00000009899	oscp1a	89	64.407	Poecilia_reticulata
ENSG00000181817	LSM10	100	99.187	ENSPPYG00000001539	LSM10	100	99.187	Pongo_abelii
ENSG00000181817	LSM10	100	90.244	ENSPCAG00000002520	LSM10	100	90.244	Procavia_capensis
ENSG00000181817	LSM10	100	91.057	ENSPVAG00000008644	LSM10	100	91.057	Pteropus_vampyrus
ENSG00000181817	LSM10	96	66.102	ENSPNYG00000003138	oscp1a	96	66.102	Pundamilia_nyererei
ENSG00000181817	LSM10	94	65.517	ENSPNAG00000028829	oscp1a	96	65.517	Pygocentrus_nattereri
ENSG00000181817	LSM10	98	91.667	ENSRNOG00000025716	Lsm10	98	91.667	Rattus_norvegicus
ENSG00000181817	LSM10	100	97.561	ENSRBIG00000001561	LSM10	100	97.561	Rhinopithecus_bieti
ENSG00000181817	LSM10	100	97.561	ENSRROG00000011414	LSM10	100	97.561	Rhinopithecus_roxellana
ENSG00000181817	LSM10	100	97.561	ENSSBOG00000036413	-	100	97.561	Saimiri_boliviensis_boliviensis
ENSG00000181817	LSM10	100	80.488	ENSSHAG00000018056	LSM10	100	80.488	Sarcophilus_harrisii
ENSG00000181817	LSM10	99	63.934	ENSSFOG00015019954	lsm10	100	63.934	Scleropages_formosus
ENSG00000181817	LSM10	93	64.348	ENSSMAG00000001297	oscp1a	98	64.348	Scophthalmus_maximus
ENSG00000181817	LSM10	98	63.115	ENSSDUG00000007090	oscp1a	99	63.115	Seriola_dumerili
ENSG00000181817	LSM10	95	64.103	ENSSLDG00000000800	oscp1a	97	64.103	Seriola_lalandi_dorsalis
ENSG00000181817	LSM10	100	88.800	ENSSARG00000004211	LSM10	100	90.400	Sorex_araneus
ENSG00000181817	LSM10	94	65.517	ENSSPAG00000009229	oscp1a	96	65.517	Stegastes_partitus
ENSG00000181817	LSM10	100	88.618	ENSSSCG00000038916	LSM10	100	88.618	Sus_scrofa
ENSG00000181817	LSM10	96	72.881	ENSTGUG00000001600	-	97	72.881	Taeniopygia_guttata
ENSG00000181817	LSM10	96	72.881	ENSTGUG00000001602	-	97	72.881	Taeniopygia_guttata
ENSG00000181817	LSM10	96	66.102	ENSTRUG00000010531	oscp1a	95	66.102	Takifugu_rubripes
ENSG00000181817	LSM10	100	93.496	ENSTBEG00000016674	LSM10	100	93.496	Tupaia_belangeri
ENSG00000181817	LSM10	100	89.431	ENSUAMG00000020265	LSM10	100	89.431	Ursus_americanus
ENSG00000181817	LSM10	100	89.431	ENSUMAG00000001438	LSM10	57	89.431	Ursus_maritimus
ENSG00000181817	LSM10	100	91.057	ENSVVUG00000023209	LSM10	100	91.057	Vulpes_vulpes
ENSG00000181817	LSM10	100	69.919	ENSXETG00000027631	lsm10	100	69.919	Xenopus_tropicalis
ENSG00000181817	LSM10	97	61.345	ENSXCOG00000018776	oscp1a	75	61.345	Xiphophorus_couchianus
ENSG00000181817	LSM10	100	60.317	ENSXMAG00000019963	oscp1a	98	60.317	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	12975319.15231747.16087681.16189514.19060904.	IPI	Function
GO:0005634	nucleus	-	IDA	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005683	U7 snRNP	11574479.	IDA	Component
GO:0006369	termination of RNA polymerase II transcription	-	TAS	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0008334	histone mRNA metabolic process	-	TAS	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0015030	Cajal body	11574479.	IDA	Component
GO:0016604	nuclear body	-	IDA	Component
GO:0071208	histone pre-mRNA DCP binding	-	ISS	Function
GO:0071209	U7 snRNA binding	18082603.	IPI	Function
GO:1900087	positive regulation of G1/S transition of mitotic cell cycle	16914750.	IMP	Process